Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99864 * 0.02562 * 11 10 9 13 13 O 1.34224 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.45197 * 116.99833 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47459 * 180.02562 * 14 13 11 16 16 C 1.53002 * 119.30111 * 250.95387 * 15 14 13 17 17 C 1.53874 * 121.33542 * 179.11714 * 15 14 13 18 18 H 1.09008 * 121.32822 * 359.43318 * 17 15 14 19 19 C 1.54266 * 106.59889 * 221.94201 * 17 15 14 20 20 C 1.54884 * 104.19554 * 336.38600 * 19 17 15 21 21 C 1.54273 * 117.41123 * 45.29444 * 15 14 13 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46909 * 299.99046 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.09004 * 109.47762 * 300.00317 * 14 13 11 28 28 H 1.09001 * 109.47346 * 60.00518 * 14 13 11 29 29 H 1.09003 * 117.45888 * 356.29020 * 16 15 14 30 30 H 1.08997 * 117.46045 * 141.09089 * 16 15 14 31 31 H 1.09007 * 110.48081 * 217.71058 * 19 17 15 32 32 H 1.08995 * 110.60150 * 95.12172 * 19 17 15 33 33 H 1.09005 * 110.75852 * 279.63055 * 20 19 17 34 34 H 1.09004 * 110.91678 * 156.33462 * 20 19 17 35 35 H 1.09004 * 110.48371 * 282.26954 * 21 15 14 36 36 H 1.09000 * 110.48516 * 44.77891 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2837 -4.9672 0.0011 13 8 2.1631 -6.1296 0.0008 14 6 1.3724 -7.3473 0.0020 15 6 2.3044 -8.5607 0.0020 16 6 2.4143 -9.4204 -1.2589 17 6 1.7497 -9.9958 0.0234 18 1 0.6771 -10.1885 0.0484 19 6 2.6292 -10.7936 1.0081 20 6 3.9663 -10.0126 1.0417 21 6 3.5018 -8.5366 0.9744 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.7445 -7.3721 0.8926 28 1 0.7426 -7.3726 -0.8873 29 1 1.7682 -9.1655 -2.0990 30 1 3.4010 -9.8003 -1.5238 31 1 2.7889 -11.8077 0.6415 32 1 2.1745 -10.8141 1.9985 33 1 4.5821 -10.2635 0.1779 34 1 4.5067 -10.2056 1.9685 35 1 4.2982 -7.9034 0.5833 36 1 3.1873 -8.1883 1.9582 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345181098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -104.810884 kcal Electronic energy + Delta-G solvation = -16500.329005 eV Core-core repulsion = 13755.581533 eV Total energy + Delta-G solvation = -2744.747472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69234 -40.54010 -37.64093 -36.03346 -33.16068 -32.53158 -30.10654 -28.05726 -26.90212 -24.43546 -24.00394 -21.75467 -20.55685 -19.88272 -19.25120 -18.32514 -17.77927 -17.64331 -16.42631 -15.84430 -15.61441 -15.58810 -14.84697 -14.57792 -14.22135 -13.89775 -13.69467 -13.63666 -13.37304 -12.70190 -12.43267 -12.17405 -12.12804 -12.01822 -11.96044 -11.88637 -11.88165 -11.75198 -11.57782 -10.93866 -10.79371 -10.57050 -10.43287 -8.72054 -6.44554 1.10733 1.52254 1.57562 1.65128 1.83832 2.58125 2.62691 3.14697 3.41940 3.55609 3.64609 3.75633 3.94665 4.14170 4.18337 4.23921 4.27755 4.35005 4.47733 4.55851 4.64897 4.75495 4.79500 4.92646 5.00850 5.04664 5.15976 5.19118 5.25581 5.26521 5.27179 5.32695 5.41405 5.88028 6.14468 6.47113 6.70879 7.40772 8.68298 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059812 B = 0.003905 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.023952 B = 7169.072960 C = 7421.556348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.043 4.043 3 Si 1.125 2.875 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.621 4.621 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.088 4.088 11 C 0.465 3.535 12 O -0.548 6.548 13 O -0.348 6.348 14 C 0.104 3.896 15 C -0.162 4.162 16 C -0.138 4.138 17 C -0.143 4.143 18 H 0.117 0.883 19 C -0.094 4.094 20 C -0.125 4.125 21 C -0.086 4.086 22 H 0.252 0.748 23 H -0.014 1.014 24 H -0.014 1.014 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 -21.951 0.667 23.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.945 3.055 4 H -0.213 1.213 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.658 4.658 8 H 0.088 0.912 9 C -0.015 4.015 10 C -0.125 4.125 11 C 0.310 3.690 12 O -0.438 6.438 13 O -0.265 6.265 14 C 0.030 3.970 15 C -0.162 4.162 16 C -0.174 4.174 17 C -0.161 4.161 18 H 0.135 0.865 19 C -0.131 4.131 20 C -0.162 4.162 21 C -0.123 4.123 22 H 0.062 0.938 23 H 0.005 0.995 24 H 0.005 0.995 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.073 -20.385 0.686 22.324 hybrid contribution -0.797 -1.530 -0.027 1.726 sum 8.276 -21.915 0.659 23.435 Atomic orbital electron populations 1.70903 1.08332 1.29811 1.48474 1.27663 0.96484 1.07376 0.92424 0.82858 0.73981 0.70284 0.78401 1.21314 1.18863 1.18848 1.22443 0.95364 0.92368 1.55663 0.91237 1.18972 0.94371 0.93418 0.94711 1.21369 0.99037 0.85795 1.06281 1.24473 0.87095 0.86696 0.70731 1.90612 1.17531 1.88453 1.47242 1.86521 1.41625 1.14666 1.83670 1.22446 0.92513 0.80247 1.01750 1.22251 1.00582 0.90436 1.02973 1.23533 1.03071 1.00355 0.90469 1.23886 1.00245 0.92809 0.99170 0.86547 1.21970 0.94210 0.98887 0.98001 1.22538 0.97331 0.93331 1.03020 1.21803 0.95279 0.98010 0.97217 0.93824 0.99519 0.99522 0.86656 0.86652 0.91843 0.91730 0.87957 0.87211 0.89566 0.90424 0.90505 0.89903 0.91669 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.51 13.65 21.45 0.29 -60.21 16 2 C -0.04 -2.50 5.46 84.65 0.46 -2.04 16 3 Si 1.13 49.92 29.90 68.60 2.05 51.97 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.62 -35.51 9.11 25.60 0.23 -35.28 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.23 3.57 29.85 0.11 1.34 16 10 C -0.09 -3.65 5.75 29.85 0.17 -3.48 16 11 C 0.46 18.95 7.96 71.24 0.57 19.52 16 12 O -0.55 -26.24 15.73 21.98 0.35 -25.90 16 13 O -0.35 -11.74 9.85 -51.36 -0.51 -12.25 16 14 C 0.10 2.96 5.76 71.98 0.41 3.38 16 15 C -0.16 -3.49 2.68 -51.46 -0.14 -3.63 16 16 C -0.14 -2.38 9.69 31.44 0.30 -2.07 16 17 C -0.14 -2.34 7.04 -9.22 -0.06 -2.41 16 18 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 19 C -0.09 -1.21 6.78 31.67 0.21 -0.99 16 20 C -0.12 -1.72 6.43 31.88 0.21 -1.51 16 21 C -0.09 -1.69 6.11 31.67 0.19 -1.50 16 22 H 0.25 16.85 7.22 -92.71 -0.67 16.18 16 23 H -0.01 -0.82 7.97 -2.39 -0.02 -0.84 16 24 H -0.01 -0.82 7.97 -2.39 -0.02 -0.84 16 25 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 26 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 29 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 1.61 7.23 -2.39 -0.02 1.59 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.95 7.39 -2.38 -0.02 0.93 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -71.29 301.76 6.00 -65.29 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.14 Total: 9.77 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 2.67 Total: -28.67 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.29 Total: -60.21 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.16 Total: -38.15 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -71.29 6.00 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345181098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.521 kcal (2) G-P(sol) polarization free energy of solvation -71.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds