Wall clock time and date at job start Sun Mar 29 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.55070 * 2 1 4 4 C 1.50698 * 109.46938 * 279.64377 * 3 2 1 5 5 O 1.20822 * 120.00489 * 5.53667 * 4 3 2 6 6 O 1.34230 * 119.99890 * 185.53062 * 4 3 2 7 7 C 1.45193 * 117.00174 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47273 * 30.00551 * 7 6 4 9 9 C 1.50705 * 109.47524 * 150.00014 * 7 6 4 10 10 H 1.08001 * 119.99286 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00282 * 179.97438 * 9 7 6 12 12 N 1.31509 * 119.99752 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 119.99835 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47472 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47255 * 120.00298 * 13 11 9 16 16 H 1.48507 * 109.47320 * 239.99852 * 13 11 9 17 17 C 1.53006 * 109.47323 * 270.00206 * 7 6 4 18 18 C 1.52996 * 117.49680 * 128.74736 * 17 7 6 19 19 C 1.53001 * 117.49710 * 60.08637 * 17 7 6 20 20 C 1.53008 * 117.51484 * 145.70154 * 2 1 3 21 21 C 1.53003 * 60.00074 * 107.47982 * 20 2 1 22 22 H 1.08999 * 109.47098 * 64.98830 * 1 2 3 23 23 H 1.08995 * 109.47303 * 184.98771 * 1 2 3 24 24 H 1.09003 * 109.46889 * 304.98860 * 1 2 3 25 25 H 1.09000 * 109.47114 * 159.64656 * 3 2 1 26 26 H 1.08996 * 109.47197 * 39.64593 * 3 2 1 27 27 H 0.97009 * 119.99653 * 180.02562 * 12 11 9 28 28 H 1.08998 * 115.54991 * 274.41669 * 17 7 6 29 29 H 1.08998 * 117.50260 * 359.97438 * 18 17 7 30 30 H 1.09002 * 117.49514 * 145.02436 * 18 17 7 31 31 H 1.08997 * 117.49346 * 214.97908 * 19 17 7 32 32 H 1.08995 * 117.49554 * 359.97321 * 19 17 7 33 33 H 1.09003 * 117.49621 * 214.96868 * 20 2 1 34 34 H 1.08991 * 117.49984 * 359.97438 * 20 2 1 35 35 H 1.08997 * 117.49806 * 252.51228 * 21 20 2 36 36 H 1.09004 * 117.49930 * 107.48233 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1918 1.9362 -1.4007 5 8 1.6268 1.3412 -2.2876 6 8 2.8211 3.0924 -1.6631 7 6 2.7814 3.5681 -3.0343 8 1 1.8585 3.2339 -3.5083 9 6 2.8347 5.0742 -3.0454 10 1 2.8930 5.6192 -2.1148 11 6 2.8101 5.7562 -4.2434 12 7 2.7395 5.0924 -5.3765 13 14 2.8768 7.6229 -4.2570 14 1 2.9530 8.1257 -2.8618 15 1 4.0763 8.0698 -5.0098 16 1 1.6549 8.1573 -4.9103 17 6 3.9808 3.0097 -3.8029 18 6 3.7027 2.3102 -5.1348 19 6 4.1064 1.4885 -3.9080 20 6 2.2369 -1.1210 0.7647 21 6 2.2364 -1.1209 -0.7653 22 1 -0.3633 0.4345 -0.9313 23 1 -0.3634 -1.0237 0.0893 24 1 -0.3633 0.5893 0.8420 25 1 3.2159 1.2926 0.3574 26 1 1.6327 2.0494 0.6557 27 1 2.7226 5.5722 -6.2194 28 1 4.9021 3.5863 -3.7199 29 1 2.6654 2.2474 -5.4634 30 1 4.4414 2.4262 -5.9280 31 1 5.1104 1.0644 -3.8945 32 1 3.3348 0.8856 -3.4292 33 1 3.1721 -0.8751 1.2677 34 1 1.6119 -1.8585 1.2682 35 1 1.6112 -1.8583 -1.2685 36 1 3.1713 -0.8747 -1.2689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345534038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:32 Heat of formation + Delta-G solvation = -48.350331 kcal Electronic energy + Delta-G solvation = -17504.213989 eV Core-core repulsion = 14761.914831 eV Total energy + Delta-G solvation = -2742.299158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.79350 -37.87057 -36.10186 -34.75039 -32.62344 -29.82442 -28.26300 -27.38698 -23.28887 -22.33185 -21.26712 -20.96438 -19.22901 -18.64318 -16.98765 -16.42457 -15.63921 -15.40651 -14.86107 -14.42293 -14.26795 -13.76232 -13.10734 -12.80007 -12.46797 -12.21777 -11.88255 -11.53084 -11.41430 -11.22261 -11.10914 -11.00870 -10.88075 -10.38538 -10.24490 -10.17029 -9.78929 -9.74153 -9.44516 -9.23399 -8.98150 -8.60825 -8.40342 -6.13200 -4.20758 3.10770 3.25012 3.32060 3.35938 3.52964 4.10675 4.38914 4.72933 4.86993 5.02468 5.10469 5.11363 5.20417 5.61957 5.69067 5.74477 5.82182 5.95462 5.97359 6.01186 6.07719 6.14916 6.21873 6.25362 6.41593 6.44277 6.59042 6.74770 7.03504 7.19871 7.32202 7.45695 7.67409 7.90309 8.17269 8.71761 8.96075 9.44047 10.93607 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035265 B = 0.006651 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.805558 B = 4208.899287 C = 4641.709668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.113 4.113 3 C -0.082 4.082 4 C 0.452 3.548 5 O -0.512 6.512 6 O -0.356 6.356 7 C 0.249 3.751 8 H 0.048 0.952 9 C -0.527 4.527 10 H 0.069 0.931 11 C 0.068 3.932 12 N -0.873 5.873 13 Si 0.905 3.095 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.114 4.114 18 C -0.124 4.124 19 C -0.229 4.229 20 C -0.178 4.178 21 C -0.157 4.157 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -8.858 8.907 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.119 4.119 4 C 0.295 3.705 5 O -0.401 6.401 6 O -0.273 6.273 7 C 0.196 3.804 8 H 0.065 0.935 9 C -0.565 4.565 10 H 0.087 0.913 11 C -0.136 4.136 12 N -0.509 5.509 13 Si 0.733 3.267 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.133 4.133 18 C -0.161 4.161 19 C -0.266 4.266 20 C -0.215 4.215 21 C -0.194 4.194 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.689 -8.962 8.397 12.301 hybrid contribution 0.176 1.001 -0.371 1.082 sum -0.513 -7.962 8.025 11.316 Atomic orbital electron populations 1.21306 0.91770 1.01451 1.02478 1.21088 0.95046 0.89485 1.05652 1.20871 1.02921 0.95066 0.93078 1.23264 0.75966 0.80248 0.91003 1.90556 1.42311 1.59368 1.47898 1.86478 1.67577 1.36046 1.37185 1.20163 0.93918 0.93518 0.72769 0.93478 1.20968 1.53033 0.88947 0.93516 0.91330 1.24881 0.94629 0.99001 0.95079 1.70062 1.48219 1.35331 0.97336 0.86323 0.77665 0.84461 0.78289 1.19541 1.20833 1.20837 1.22583 1.00612 0.90164 0.99910 1.22353 1.01238 1.02029 0.90472 1.23291 1.00991 0.96226 1.06135 1.23165 1.02155 1.01036 0.95132 1.22899 1.02446 1.00838 0.93253 0.91211 0.92747 0.92520 0.88500 0.87943 0.92734 0.89496 0.89378 0.90886 0.91209 0.88652 0.88886 0.88883 0.88859 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.66 37.16 0.36 -1.07 16 2 C -0.11 -1.50 1.59 -154.50 -0.25 -1.75 16 3 C -0.08 -1.21 5.75 -27.89 -0.16 -1.37 16 4 C 0.45 9.18 7.04 36.00 0.25 9.44 16 5 O -0.51 -11.41 12.00 -18.75 -0.23 -11.64 16 6 O -0.36 -8.44 9.85 -39.26 -0.39 -8.83 16 7 C 0.25 6.59 2.25 -27.88 -0.06 6.52 16 8 H 0.05 1.38 6.91 -51.93 -0.36 1.03 16 9 C -0.53 -14.73 8.88 -34.44 -0.31 -15.03 16 10 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 11 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 12 N -0.87 -24.40 11.43 55.43 0.63 -23.77 16 13 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C -0.11 -2.82 4.47 -90.62 -0.41 -3.22 16 18 C -0.12 -2.89 9.04 -26.69 -0.24 -3.13 16 19 C -0.23 -4.99 9.80 -26.69 -0.26 -5.25 16 20 C -0.18 -1.94 9.87 -26.73 -0.26 -2.20 16 21 C -0.16 -2.09 9.20 -26.73 -0.25 -2.34 16 22 H 0.07 1.04 7.60 -51.93 -0.39 0.65 16 23 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.10 1.27 7.95 -51.93 -0.41 0.86 16 26 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.09 2.22 8.11 -51.93 -0.42 1.80 16 29 H 0.09 2.20 8.05 -51.93 -0.42 1.78 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.10 2.13 5.37 -51.93 -0.28 1.85 16 33 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -29.41 300.24 -7.78 -37.18 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.63 Total: 4.15 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.67 Total: -17.64 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.63 Total: -23.77 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.61 Total: -20.46 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.41 -7.78 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.167 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds