Wall clock time and date at job start Sun Mar 29 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.55070 * 2 1 4 4 C 1.50698 * 109.46938 * 279.64377 * 3 2 1 5 5 O 1.20822 * 120.00489 * 5.53667 * 4 3 2 6 6 O 1.34230 * 119.99890 * 185.53062 * 4 3 2 7 7 C 1.45193 * 117.00174 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47273 * 30.00551 * 7 6 4 9 9 C 1.50705 * 109.47524 * 150.00014 * 7 6 4 10 10 H 1.08001 * 119.99286 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00282 * 179.97438 * 9 7 6 12 12 N 1.31509 * 119.99752 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 119.99835 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47472 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47255 * 120.00298 * 13 11 9 16 16 H 1.48507 * 109.47320 * 239.99852 * 13 11 9 17 17 C 1.53006 * 109.47323 * 270.00206 * 7 6 4 18 18 C 1.52996 * 117.49680 * 128.74736 * 17 7 6 19 19 C 1.53001 * 117.49710 * 60.08637 * 17 7 6 20 20 C 1.53008 * 117.51484 * 145.70154 * 2 1 3 21 21 C 1.53003 * 60.00074 * 107.47982 * 20 2 1 22 22 H 1.08999 * 109.47098 * 64.98830 * 1 2 3 23 23 H 1.08995 * 109.47303 * 184.98771 * 1 2 3 24 24 H 1.09003 * 109.46889 * 304.98860 * 1 2 3 25 25 H 1.09000 * 109.47114 * 159.64656 * 3 2 1 26 26 H 1.08996 * 109.47197 * 39.64593 * 3 2 1 27 27 H 0.97009 * 119.99653 * 180.02562 * 12 11 9 28 28 H 1.08998 * 115.54991 * 274.41669 * 17 7 6 29 29 H 1.08998 * 117.50260 * 359.97438 * 18 17 7 30 30 H 1.09002 * 117.49514 * 145.02436 * 18 17 7 31 31 H 1.08997 * 117.49346 * 214.97908 * 19 17 7 32 32 H 1.08995 * 117.49554 * 359.97321 * 19 17 7 33 33 H 1.09003 * 117.49621 * 214.96868 * 20 2 1 34 34 H 1.08991 * 117.49984 * 359.97438 * 20 2 1 35 35 H 1.08997 * 117.49806 * 252.51228 * 21 20 2 36 36 H 1.09004 * 117.49930 * 107.48233 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1918 1.9362 -1.4007 5 8 1.6268 1.3412 -2.2876 6 8 2.8211 3.0924 -1.6631 7 6 2.7814 3.5681 -3.0343 8 1 1.8585 3.2339 -3.5083 9 6 2.8347 5.0742 -3.0454 10 1 2.8930 5.6192 -2.1148 11 6 2.8101 5.7562 -4.2434 12 7 2.7395 5.0924 -5.3765 13 14 2.8768 7.6229 -4.2570 14 1 2.9530 8.1257 -2.8618 15 1 4.0763 8.0698 -5.0098 16 1 1.6549 8.1573 -4.9103 17 6 3.9808 3.0097 -3.8029 18 6 3.7027 2.3102 -5.1348 19 6 4.1064 1.4885 -3.9080 20 6 2.2369 -1.1210 0.7647 21 6 2.2364 -1.1209 -0.7653 22 1 -0.3633 0.4345 -0.9313 23 1 -0.3634 -1.0237 0.0893 24 1 -0.3633 0.5893 0.8420 25 1 3.2159 1.2926 0.3574 26 1 1.6327 2.0494 0.6557 27 1 2.7226 5.5722 -6.2194 28 1 4.9021 3.5863 -3.7199 29 1 2.6654 2.2474 -5.4634 30 1 4.4414 2.4262 -5.9280 31 1 5.1104 1.0644 -3.8945 32 1 3.3348 0.8856 -3.4292 33 1 3.1721 -0.8751 1.2677 34 1 1.6119 -1.8585 1.2682 35 1 1.6112 -1.8583 -1.2685 36 1 3.1713 -0.8747 -1.2689 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345534038.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:32 Heat of formation + Delta-G solvation = -63.211009 kcal Electronic energy + Delta-G solvation = -17504.858396 eV Core-core repulsion = 14761.914831 eV Total energy + Delta-G solvation = -2742.943566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42761 -39.15283 -37.82794 -36.56191 -34.71021 -31.14565 -29.74394 -28.89863 -25.30861 -23.30044 -23.09990 -22.59217 -21.11083 -19.87531 -18.85691 -18.25039 -17.25219 -17.01480 -16.49755 -15.95747 -15.73662 -15.29587 -14.64518 -14.45766 -13.83430 -13.49711 -13.41471 -13.09497 -12.96997 -12.92089 -12.76424 -12.32280 -12.24768 -12.17320 -12.14378 -11.75473 -11.44347 -11.24208 -11.00704 -10.91386 -10.58905 -10.56266 -10.40634 -8.21995 -6.38836 1.41595 1.41892 1.49516 1.55242 2.03732 2.42520 2.98165 3.05604 3.27873 3.67839 3.84700 4.00007 4.07519 4.12668 4.25780 4.31303 4.44995 4.59778 4.66170 4.76401 4.79705 4.84012 4.96123 5.01471 5.08597 5.10745 5.15801 5.27223 5.31000 5.39334 5.40724 5.49494 5.59225 5.89333 6.22016 6.66177 7.11641 7.32836 8.84497 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035265 B = 0.006651 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.805558 B = 4208.899287 C = 4641.709668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.132 4.132 3 C -0.073 4.073 4 C 0.444 3.556 5 O -0.536 6.536 6 O -0.369 6.369 7 C 0.255 3.745 8 H 0.005 0.995 9 C -0.556 4.556 10 H 0.062 0.938 11 C 0.024 3.976 12 N -0.896 5.896 13 Si 0.974 3.026 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.277 1.277 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.198 4.198 20 C -0.140 4.140 21 C -0.178 4.178 22 H 0.035 0.965 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.267 0.733 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -9.283 10.522 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.110 4.110 4 C 0.289 3.711 5 O -0.427 6.427 6 O -0.286 6.286 7 C 0.202 3.798 8 H 0.023 0.977 9 C -0.593 4.593 10 H 0.081 0.919 11 C -0.178 4.178 12 N -0.532 5.532 13 Si 0.798 3.202 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.203 1.203 17 C -0.150 4.150 18 C -0.161 4.161 19 C -0.234 4.234 20 C -0.177 4.177 21 C -0.215 4.215 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.026 -9.408 10.026 13.749 hybrid contribution -0.097 1.065 -0.868 1.378 sum -0.072 -8.343 9.158 12.388 Atomic orbital electron populations 1.21285 0.91581 1.02573 1.01346 1.21175 0.95359 0.89051 1.07659 1.21038 1.04857 0.96016 0.89130 1.24461 0.74637 0.78899 0.93151 1.90542 1.43103 1.59657 1.49375 1.86472 1.68602 1.37963 1.35561 1.19767 0.92672 0.93187 0.74178 0.97700 1.21240 1.54294 0.90046 0.93765 0.91941 1.25726 0.93769 1.03769 0.94502 1.70174 1.48064 1.37167 0.97817 0.85270 0.77938 0.78487 0.78495 1.19016 1.19902 1.20281 1.22391 0.99549 0.92116 1.00931 1.22268 1.00299 1.02653 0.90909 1.23271 1.02333 0.94115 1.03730 1.23257 1.02361 0.98891 0.93147 1.22901 1.01885 1.01240 0.95465 0.94582 0.91016 0.90918 0.86300 0.85961 0.92438 0.90440 0.91818 0.89400 0.88017 0.89343 0.87233 0.86679 0.88959 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.66 71.98 0.70 -1.97 16 2 C -0.13 -3.28 1.59 -52.18 -0.08 -3.36 16 3 C -0.07 -2.05 5.75 29.85 0.17 -1.87 16 4 C 0.44 18.23 7.04 71.24 0.50 18.73 16 5 O -0.54 -24.72 12.00 21.98 0.26 -24.46 16 6 O -0.37 -17.87 9.85 -51.42 -0.51 -18.38 16 7 C 0.26 14.01 2.25 29.85 0.07 14.07 16 8 H 0.01 0.33 6.91 -2.39 -0.02 0.31 16 9 C -0.56 -31.91 8.88 25.60 0.23 -31.68 16 10 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 11 C 0.02 1.34 5.30 84.66 0.45 1.79 16 12 N -0.90 -50.98 11.43 21.45 0.25 -50.74 16 13 Si 0.97 43.29 29.54 68.60 2.03 45.31 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 17 C -0.13 -6.61 4.47 -10.79 -0.05 -6.65 16 18 C -0.12 -5.89 9.04 30.62 0.28 -5.61 16 19 C -0.20 -8.52 9.80 30.62 0.30 -8.22 16 20 C -0.14 -2.54 9.87 30.60 0.30 -2.23 16 21 C -0.18 -4.48 9.20 30.60 0.28 -4.20 16 22 H 0.04 1.09 7.60 -2.39 -0.02 1.07 16 23 H 0.07 1.43 8.09 -2.39 -0.02 1.42 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.12 2.80 7.95 -2.39 -0.02 2.79 16 26 H 0.12 2.95 8.13 -2.39 -0.02 2.93 16 27 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 28 H 0.08 4.02 8.11 -2.39 -0.02 4.00 16 29 H 0.06 3.31 8.05 -2.39 -0.02 3.30 16 30 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 32 H 0.09 3.97 5.37 -2.39 -0.01 3.96 16 33 H 0.11 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -65.38 300.24 6.22 -59.16 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.05 Total: 20.31 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.14 Total: -31.22 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.25 Total: -50.74 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -0.24 Total: -42.83 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.38 6.22 -59.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345534038.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.050 kcal (2) G-P(sol) polarization free energy of solvation -65.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds