Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99970 * 2 1 4 4 C 1.53000 * 109.47087 * 125.00042 * 3 2 1 5 5 C 1.53001 * 109.47368 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47051 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00099 * 359.97438 * 6 5 4 8 8 O 1.34237 * 119.99854 * 180.02562 * 6 5 4 9 9 C 1.45200 * 116.99983 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46801 * 330.00444 * 9 8 6 11 11 C 1.50696 * 109.46946 * 209.99989 * 9 8 6 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47035 * 60.00183 * 15 13 11 17 17 H 1.48503 * 109.46845 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47237 * 299.99939 * 15 13 11 19 19 C 1.53008 * 109.46596 * 90.00143 * 9 8 6 20 20 C 1.52999 * 117.49893 * 8.74806 * 19 9 8 21 21 C 1.52998 * 117.49827 * 300.08660 * 19 9 8 22 22 H 1.07992 * 120.00192 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99742 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99742 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47226 * 4.99792 * 3 2 1 26 26 H 1.09004 * 109.46945 * 244.99725 * 3 2 1 27 27 H 1.09002 * 109.46958 * 59.99540 * 4 3 2 28 28 H 1.09004 * 109.46970 * 299.99669 * 4 3 2 29 29 H 1.09000 * 109.46480 * 60.00129 * 5 4 3 30 30 H 1.08994 * 109.46956 * 300.00090 * 5 4 3 31 31 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 32 32 H 1.08996 * 115.54647 * 154.41265 * 19 9 8 33 33 H 1.09005 * 117.49957 * 359.97438 * 20 19 9 34 34 H 1.09000 * 117.50113 * 145.01940 * 20 19 9 35 35 H 1.08999 * 117.49595 * 214.98168 * 21 19 9 36 36 H 1.09000 * 117.49853 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8006 2.6578 1.1813 6 6 4.7570 2.6856 2.3455 7 8 4.8196 1.7427 3.0986 8 8 5.5387 3.7582 2.5466 9 6 6.4353 3.7158 3.6879 10 1 5.9933 3.1044 4.4746 11 6 6.6582 5.1141 4.2036 12 1 6.1741 5.9509 3.7222 13 6 7.4803 5.3252 5.2903 14 7 8.0741 4.3067 5.8732 15 14 7.7572 7.0586 5.9292 16 1 6.4580 7.6472 6.3425 17 1 8.6741 7.0152 7.0965 18 1 8.3591 7.8911 4.8569 19 6 7.7742 3.1097 3.2622 20 6 7.9986 2.8717 1.7676 21 6 7.7592 1.6850 2.7045 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6214 1.4026 -0.9314 27 1 3.7400 0.5065 1.0921 28 1 2.4772 1.2356 2.1130 29 1 3.0959 3.4846 1.2707 30 1 4.3584 2.7549 0.2500 31 1 7.9306 3.4067 5.5412 32 1 8.6360 3.4074 3.8594 33 1 7.1923 3.1465 1.0875 34 1 9.0082 3.0124 1.3816 35 1 8.6114 1.0456 2.9346 36 1 6.7956 1.1794 2.6413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345546335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = -63.205877 kcal Electronic energy + Delta-G solvation = -16959.444131 eV Core-core repulsion = 14216.500788 eV Total energy + Delta-G solvation = -2742.943343 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93593 -37.05975 -35.95082 -34.84885 -33.03000 -32.43243 -28.10753 -26.80201 -23.52431 -22.50949 -21.61628 -20.30333 -19.92441 -19.04326 -17.51869 -16.88571 -16.28685 -15.69897 -14.99782 -14.58656 -14.05631 -13.79118 -13.58179 -13.10137 -12.76024 -12.39451 -12.14623 -11.76938 -11.63160 -11.49291 -11.02432 -11.01421 -10.78794 -10.77693 -10.65760 -10.16746 -9.80441 -9.78572 -9.69929 -9.48350 -9.16973 -8.47684 -8.41517 -6.50876 -4.26804 2.11777 2.88646 3.38052 3.40600 3.55025 3.61352 4.43445 4.65690 4.70669 4.86282 5.08626 5.18729 5.20650 5.22743 5.45086 5.59630 5.65414 5.68562 5.72519 5.80876 5.87308 5.93677 6.09027 6.27783 6.29637 6.46779 6.49430 6.61196 6.65449 6.83892 6.95064 7.19073 7.47541 7.92144 8.23879 8.59141 8.72630 9.43310 10.85649 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036194 B = 0.005204 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.414450 B = 5379.128930 C = 5785.103065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.095 4.095 4 C -0.103 4.103 5 C -0.117 4.117 6 C 0.448 3.552 7 O -0.519 6.519 8 O -0.346 6.346 9 C 0.239 3.761 10 H 0.041 0.959 11 C -0.599 4.599 12 H 0.064 0.936 13 C 0.025 3.975 14 N -0.906 5.906 15 Si 1.078 2.922 16 H -0.285 1.285 17 H -0.280 1.280 18 H -0.285 1.285 19 C -0.146 4.146 20 C -0.181 4.181 21 C -0.208 4.208 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.277 0.723 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.955 -4.630 -11.138 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.141 4.141 5 C -0.155 4.155 6 C 0.292 3.708 7 O -0.409 6.409 8 O -0.262 6.262 9 C 0.186 3.814 10 H 0.059 0.941 11 C -0.637 4.637 12 H 0.082 0.918 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.905 3.095 16 H -0.212 1.212 17 H -0.205 1.205 18 H -0.211 1.211 19 C -0.165 4.165 20 C -0.218 4.218 21 C -0.245 4.245 22 H 0.113 0.887 23 H 0.114 0.886 24 H 0.126 0.874 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.093 -4.008 -9.717 13.266 hybrid contribution -0.668 -1.078 -1.156 1.716 sum -8.761 -5.086 -10.872 14.860 Atomic orbital electron populations 1.23836 0.95970 1.01735 1.02147 1.22980 0.96028 0.98640 0.98990 1.20794 0.98203 0.95473 0.98778 1.21344 0.97758 0.96260 0.98705 1.21377 0.97325 1.00442 0.96310 1.23527 0.80237 0.81275 0.85804 1.90575 1.67123 1.36606 1.46609 1.86518 1.49057 1.40292 1.50351 1.20177 0.82147 0.98180 0.80934 0.94103 1.21808 1.33631 0.91257 1.16963 0.91791 1.25900 0.92565 1.06098 0.93360 1.70791 1.41235 1.00658 1.41540 0.83413 0.76608 0.73104 0.76374 1.21174 1.20542 1.21130 1.23255 1.02579 0.95354 0.95348 1.22743 1.01283 1.03430 0.94364 1.23204 1.02705 0.92208 1.06368 0.88672 0.88624 0.87370 0.91302 0.90774 0.90964 0.90931 0.88237 0.88343 0.91140 0.86019 0.89527 0.90057 0.90170 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.76 14.32 29.01 0.42 -1.35 16 2 C -0.15 -1.42 9.52 -36.03 -0.34 -1.77 16 3 C -0.10 -0.93 5.66 -27.88 -0.16 -1.08 16 4 C -0.10 -1.29 4.49 -26.73 -0.12 -1.41 16 5 C -0.12 -1.62 5.81 -27.88 -0.16 -1.78 16 6 C 0.45 9.01 6.90 36.00 0.25 9.26 16 7 O -0.52 -11.70 13.03 -18.75 -0.24 -11.94 16 8 O -0.35 -8.11 8.38 -39.28 -0.33 -8.44 16 9 C 0.24 6.33 2.12 -27.88 -0.06 6.27 16 10 H 0.04 1.20 7.03 -51.93 -0.36 0.84 16 11 C -0.60 -16.99 8.90 -34.44 -0.31 -17.30 16 12 H 0.06 1.81 7.81 -52.49 -0.41 1.39 16 13 C 0.03 0.71 5.20 -17.82 -0.09 0.62 16 14 N -0.91 -26.76 12.84 55.43 0.71 -26.05 16 15 Si 1.08 24.61 29.90 -169.99 -5.08 19.52 16 16 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 19 C -0.15 -3.59 4.66 -90.62 -0.42 -4.01 16 20 C -0.18 -3.76 9.80 -26.69 -0.26 -4.02 16 21 C -0.21 -4.43 9.85 -26.69 -0.26 -4.70 16 22 H 0.09 0.73 8.06 -52.49 -0.42 0.31 16 23 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 24 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.28 8.18 5.71 -40.82 -0.23 7.95 16 32 H 0.12 3.23 6.15 -51.93 -0.32 2.92 16 33 H 0.09 1.75 6.91 -51.93 -0.36 1.39 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.10 2.13 5.37 -51.93 -0.28 1.85 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -31.01 300.33 -7.32 -38.33 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.38 Total: 5.32 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -1.52 Total: -21.27 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.71 Total: -26.05 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.57 Total: -20.37 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.01 -7.32 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.876 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds