Wall clock time and date at job start Sun Mar 29 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99970 * 2 1 4 4 C 1.53000 * 109.47087 * 125.00042 * 3 2 1 5 5 C 1.53001 * 109.47368 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47051 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00099 * 359.97438 * 6 5 4 8 8 O 1.34237 * 119.99854 * 180.02562 * 6 5 4 9 9 C 1.45200 * 116.99983 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.46801 * 330.00444 * 9 8 6 11 11 C 1.50696 * 109.46946 * 209.99989 * 9 8 6 12 12 H 1.07999 * 120.00202 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 9 8 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47035 * 60.00183 * 15 13 11 17 17 H 1.48503 * 109.46845 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47237 * 299.99939 * 15 13 11 19 19 C 1.53008 * 109.46596 * 90.00143 * 9 8 6 20 20 C 1.52999 * 117.49893 * 8.74806 * 19 9 8 21 21 C 1.52998 * 117.49827 * 300.08660 * 19 9 8 22 22 H 1.07992 * 120.00192 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99742 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.99742 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47226 * 4.99792 * 3 2 1 26 26 H 1.09004 * 109.46945 * 244.99725 * 3 2 1 27 27 H 1.09002 * 109.46958 * 59.99540 * 4 3 2 28 28 H 1.09004 * 109.46970 * 299.99669 * 4 3 2 29 29 H 1.09000 * 109.46480 * 60.00129 * 5 4 3 30 30 H 1.08994 * 109.46956 * 300.00090 * 5 4 3 31 31 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 32 32 H 1.08996 * 115.54647 * 154.41265 * 19 9 8 33 33 H 1.09005 * 117.49957 * 359.97438 * 20 19 9 34 34 H 1.09000 * 117.50113 * 145.01940 * 20 19 9 35 35 H 1.08999 * 117.49595 * 214.98168 * 21 19 9 36 36 H 1.09000 * 117.49853 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8006 2.6578 1.1813 6 6 4.7570 2.6856 2.3455 7 8 4.8196 1.7427 3.0986 8 8 5.5387 3.7582 2.5466 9 6 6.4353 3.7158 3.6879 10 1 5.9933 3.1044 4.4746 11 6 6.6582 5.1141 4.2036 12 1 6.1741 5.9509 3.7222 13 6 7.4803 5.3252 5.2903 14 7 8.0741 4.3067 5.8732 15 14 7.7572 7.0586 5.9292 16 1 6.4580 7.6472 6.3425 17 1 8.6741 7.0152 7.0965 18 1 8.3591 7.8911 4.8569 19 6 7.7742 3.1097 3.2622 20 6 7.9986 2.8717 1.7676 21 6 7.7592 1.6850 2.7045 22 1 -0.5400 -0.9352 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6214 1.4026 -0.9314 27 1 3.7400 0.5065 1.0921 28 1 2.4772 1.2356 2.1130 29 1 3.0959 3.4846 1.2707 30 1 4.3584 2.7549 0.2500 31 1 7.9306 3.4067 5.5412 32 1 8.6360 3.4074 3.8594 33 1 7.1923 3.1465 1.0875 34 1 9.0082 3.0124 1.3816 35 1 8.6114 1.0456 2.9346 36 1 6.7956 1.1794 2.6413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345546335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:25 Heat of formation + Delta-G solvation = -79.525039 kcal Electronic energy + Delta-G solvation = -16960.151783 eV Core-core repulsion = 14216.500788 eV Total energy + Delta-G solvation = -2743.650995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.65697 -38.73171 -37.00132 -36.57804 -35.12386 -33.42589 -29.77646 -28.18771 -25.55910 -23.74180 -23.30773 -21.75565 -20.94556 -20.60991 -19.56584 -18.52366 -17.89667 -16.99816 -16.45127 -15.82088 -15.64880 -15.46071 -14.80347 -14.55888 -14.46747 -13.98912 -13.47478 -13.40834 -13.01215 -12.69816 -12.62650 -12.54816 -12.38177 -11.92830 -11.82111 -11.69780 -11.69455 -11.52429 -11.46494 -11.03770 -10.54436 -10.42527 -10.20087 -8.75408 -6.52971 1.28137 1.40675 1.53704 1.61990 1.82132 1.99083 2.54655 2.90571 3.07741 3.71609 3.82683 3.88065 3.99288 4.04485 4.09460 4.26889 4.33092 4.48730 4.59706 4.61255 4.64915 4.76290 4.80476 4.90367 5.01173 5.05285 5.16146 5.17398 5.22732 5.33036 5.58747 5.78103 5.88027 5.90742 6.10398 6.37681 6.91436 7.27721 8.61331 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036194 B = 0.005204 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.414450 B = 5379.128930 C = 5785.103065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C -0.087 4.087 4 C -0.097 4.097 5 C -0.106 4.106 6 C 0.439 3.561 7 O -0.549 6.549 8 O -0.355 6.355 9 C 0.243 3.757 10 H -0.003 1.003 11 C -0.619 4.619 12 H 0.060 0.940 13 C -0.019 4.019 14 N -0.927 5.927 15 Si 1.125 2.875 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.179 4.179 20 C -0.154 4.154 21 C -0.194 4.194 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -3.952 -13.121 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.185 4.185 3 C -0.124 4.124 4 C -0.135 4.135 5 C -0.143 4.143 6 C 0.285 3.715 7 O -0.440 6.440 8 O -0.271 6.271 9 C 0.189 3.811 10 H 0.015 0.985 11 C -0.657 4.657 12 H 0.078 0.922 13 C -0.218 4.218 14 N -0.563 5.563 15 Si 0.945 3.055 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.198 4.198 20 C -0.191 4.191 21 C -0.231 4.231 22 H 0.123 0.877 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.704 -3.351 -11.733 14.989 hybrid contribution -0.575 -1.377 -0.553 1.591 sum -9.278 -4.729 -12.286 16.106 Atomic orbital electron populations 1.24030 0.95849 1.02624 1.00765 1.23056 0.96464 0.98715 1.00242 1.20734 0.97784 0.95978 0.97892 1.21299 0.97785 0.95082 0.99313 1.21578 0.96406 1.01988 0.94304 1.24838 0.79963 0.79829 0.86899 1.90561 1.67886 1.37456 1.48137 1.86502 1.49452 1.42110 1.49040 1.19758 0.83476 0.96681 0.81174 0.98522 1.22143 1.33796 0.92121 1.17618 0.92166 1.27444 0.91802 1.09185 0.93397 1.70893 1.42467 1.00644 1.42296 0.82846 0.77361 0.68940 0.76367 1.19438 1.20553 1.18967 1.22923 1.00484 0.98286 0.98128 1.22863 1.02998 1.01206 0.91994 1.23195 1.03112 0.91300 1.05491 0.87739 0.87890 0.87374 0.90209 0.89202 0.92028 0.92827 0.86008 0.85387 0.92484 0.88590 0.88673 0.87494 0.88243 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.04 14.32 67.78 0.97 -2.07 16 2 C -0.17 -2.89 9.52 25.64 0.24 -2.64 16 3 C -0.09 -1.46 5.66 29.85 0.17 -1.29 16 4 C -0.10 -2.28 4.49 30.59 0.14 -2.15 16 5 C -0.11 -2.71 5.81 29.85 0.17 -2.53 16 6 C 0.44 17.58 6.90 71.23 0.49 18.08 16 7 O -0.55 -25.37 13.03 21.96 0.29 -25.09 16 8 O -0.35 -16.70 8.38 -51.48 -0.43 -17.13 16 9 C 0.24 13.30 2.12 29.85 0.06 13.37 16 10 H 0.00 -0.17 7.03 -2.39 -0.02 -0.19 16 11 C -0.62 -35.94 8.90 25.60 0.23 -35.72 16 12 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 13 C -0.02 -1.11 5.20 84.66 0.44 -0.67 16 14 N -0.93 -56.34 12.84 21.45 0.28 -56.07 16 15 Si 1.13 49.33 29.90 68.60 2.05 51.39 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 19 C -0.18 -8.93 4.66 -10.79 -0.05 -8.98 16 20 C -0.15 -6.13 9.80 30.62 0.30 -5.83 16 21 C -0.19 -8.19 9.85 30.62 0.30 -7.89 16 22 H 0.10 1.40 8.06 -2.91 -0.02 1.37 16 23 H 0.10 1.43 7.84 -2.91 -0.02 1.41 16 24 H 0.11 1.83 8.06 -2.91 -0.02 1.81 16 25 H 0.08 1.18 7.79 -2.39 -0.02 1.16 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 28 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 29 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.26 16.40 5.71 -92.71 -0.53 15.87 16 32 H 0.10 5.28 6.15 -2.39 -0.01 5.26 16 33 H 0.09 3.62 6.91 -2.38 -0.02 3.61 16 34 H 0.11 3.71 8.14 -2.39 -0.02 3.70 16 35 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.09 3.92 5.37 -2.39 -0.01 3.91 16 Total: -1.00 -69.46 300.33 6.93 -62.52 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.28 Total: 22.71 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 3.47 Total: -38.33 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.28 Total: -56.07 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.15 Total: -42.22 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.39 kcal Total: -69.46 6.93 -62.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345546335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.002 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds