Wall clock time and date at job start Sun Mar 29 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99971 * 2 1 4 4 C 1.50698 * 119.99612 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47151 * 95.00162 * 4 2 1 6 6 C 1.50694 * 109.47381 * 179.97438 * 5 4 2 7 7 O 1.20829 * 120.00052 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00194 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46758 * 29.99742 * 9 8 6 11 11 C 1.50697 * 109.47323 * 150.00089 * 9 8 6 12 12 H 1.08001 * 120.00051 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99978 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99946 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46923 * 89.99900 * 15 13 11 17 17 H 1.48504 * 109.46947 * 209.99709 * 15 13 11 18 18 H 1.48497 * 109.46828 * 329.99970 * 15 13 11 19 19 C 1.53003 * 109.46851 * 269.99901 * 9 8 6 20 20 C 1.53001 * 117.51964 * 356.28317 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.08002 * 119.99870 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99705 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46753 * 269.99748 * 3 2 1 25 25 H 1.08992 * 109.47025 * 29.99770 * 3 2 1 26 26 H 1.09005 * 109.46959 * 150.00262 * 3 2 1 27 27 H 1.09001 * 109.47597 * 335.00204 * 4 2 1 28 28 H 1.09004 * 109.46785 * 214.99804 * 4 2 1 29 29 H 1.09001 * 109.46835 * 59.99577 * 5 4 2 30 30 H 1.09002 * 109.47260 * 299.99988 * 5 4 2 31 31 H 0.97001 * 120.00567 * 179.97438 * 14 13 11 32 32 H 1.09002 * 115.54973 * 210.58100 * 19 9 8 33 33 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 34 34 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 35 35 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 36 36 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4363 6 6 3.1813 -2.9894 -1.4357 7 8 3.4051 -3.5574 -0.3930 8 8 3.6052 -3.5202 -2.5934 9 6 4.3244 -4.7793 -2.5172 10 1 3.9703 -5.3484 -1.6578 11 6 4.0859 -5.5711 -3.7770 12 1 3.4563 -5.1685 -4.5568 13 6 4.6704 -6.8099 -3.9337 14 7 5.4366 -7.3003 -2.9840 15 14 4.3742 -7.7917 -5.4951 16 1 5.4133 -7.4498 -6.4994 17 1 4.4417 -9.2430 -5.1874 18 1 3.0323 -7.4629 -6.0394 19 6 5.8215 -4.5029 -2.3643 20 6 6.2791 -3.0436 -2.4087 21 6 6.2841 -3.8069 -1.0827 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 2.2452 1.6197 -1.0277 25 1 1.4745 2.0647 0.5138 26 1 3.0160 1.1747 0.5138 27 1 1.4385 -2.0853 0.4352 28 1 2.9742 -1.1986 0.5900 29 1 3.0523 -0.9044 -1.8709 30 1 1.5167 -1.7911 -2.0257 31 1 5.8476 -8.1720 -3.0940 32 1 6.4844 -5.2517 -2.7978 33 1 7.2432 -2.8324 -2.8714 34 1 5.5137 -2.2802 -2.5473 35 1 5.5218 -3.5456 -0.3486 36 1 7.2514 -4.0979 -0.6731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:35 Heat of formation + Delta-G solvation = -61.757617 kcal Electronic energy + Delta-G solvation = -17086.423726 eV Core-core repulsion = 14343.543184 eV Total energy + Delta-G solvation = -2742.880542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79675 -37.02859 -36.04317 -34.68076 -32.80882 -31.24917 -27.94291 -27.34419 -24.85858 -23.13730 -21.45202 -20.38864 -18.92932 -18.44577 -16.94000 -16.57128 -16.03564 -15.29049 -14.92282 -14.60568 -14.23080 -13.84031 -13.47571 -13.16103 -12.54802 -12.26500 -12.11973 -11.78816 -11.48436 -11.34074 -11.18425 -10.98046 -10.93321 -10.86522 -10.53754 -10.29912 -10.04728 -9.67744 -9.47260 -9.15000 -9.05746 -8.52830 -8.44259 -6.18450 -4.25790 2.13133 3.00037 3.24893 3.30558 3.33972 3.70206 4.33505 4.81814 4.86881 4.95776 5.13604 5.14433 5.28149 5.44721 5.54402 5.60687 5.82191 5.84508 5.85620 5.89161 5.99688 6.10772 6.14498 6.21280 6.44575 6.56246 6.70026 6.81434 6.91281 7.01824 7.20656 7.57565 7.60854 7.85209 8.13232 8.63500 8.88976 9.38842 10.88713 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.005738 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.367433 B = 4878.585650 C = 5315.882066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.075 4.075 5 C -0.110 4.110 6 C 0.449 3.551 7 O -0.518 6.518 8 O -0.353 6.353 9 C 0.247 3.753 10 H 0.052 0.948 11 C -0.519 4.519 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.909 3.091 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.114 4.114 20 C -0.196 4.196 21 C -0.208 4.208 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.266 0.734 32 H 0.126 0.874 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 12.693 3.364 14.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.112 4.112 5 C -0.148 4.148 6 C 0.293 3.707 7 O -0.409 6.409 8 O -0.269 6.269 9 C 0.194 3.806 10 H 0.070 0.930 11 C -0.557 4.557 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.133 4.133 20 C -0.233 4.233 21 C -0.245 4.245 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.722 12.312 3.689 13.693 hybrid contribution 0.089 -0.653 -0.694 0.957 sum -4.633 11.659 2.995 12.899 Atomic orbital electron populations 1.23710 0.95231 1.01828 1.02765 1.21774 0.95431 0.95657 0.99323 1.20892 1.00256 0.94426 1.02222 1.20504 1.00965 0.94283 0.95449 1.21295 1.01154 0.93539 0.98799 1.23415 0.77271 0.86941 0.83106 1.90574 1.54649 1.62112 1.33542 1.86499 1.66339 1.41160 1.32913 1.20138 0.84918 0.76293 0.99216 0.93045 1.20961 1.31091 1.01253 1.02401 0.91204 1.24905 0.94702 0.96998 0.97260 1.69996 1.31120 1.18518 1.32556 0.86316 0.78885 0.78825 0.82380 1.20349 1.20984 1.19602 1.23010 0.99482 0.93166 0.97607 1.22795 1.01481 0.97333 1.01732 1.23136 1.02291 1.06932 0.92097 0.88363 0.88598 0.91315 0.92006 0.91690 0.90397 0.90368 0.88406 0.88292 0.92423 0.85574 0.90420 0.89963 0.88627 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 13.89 29.01 0.40 -1.60 16 2 C -0.12 -1.32 5.31 -101.07 -0.54 -1.86 16 3 C -0.12 -1.10 10.03 36.01 0.36 -0.74 16 4 C -0.07 -0.98 4.67 -27.88 -0.13 -1.11 16 5 C -0.11 -1.59 5.79 -27.88 -0.16 -1.76 16 6 C 0.45 9.10 6.81 36.00 0.25 9.35 16 7 O -0.52 -11.77 12.93 -18.75 -0.24 -12.01 16 8 O -0.35 -8.25 8.49 -39.25 -0.33 -8.58 16 9 C 0.25 6.55 2.39 -27.88 -0.07 6.48 16 10 H 0.05 1.52 7.16 -51.93 -0.37 1.15 16 11 C -0.52 -14.46 8.90 -34.44 -0.31 -14.77 16 12 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 13 C 0.06 1.75 5.16 -17.82 -0.09 1.66 16 14 N -0.88 -25.00 11.66 55.43 0.65 -24.35 16 15 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.11 -2.84 5.23 -90.61 -0.47 -3.31 16 20 C -0.20 -4.14 9.74 -26.73 -0.26 -4.40 16 21 C -0.21 -4.58 9.87 -26.73 -0.26 -4.84 16 22 H 0.10 0.99 7.99 -52.49 -0.42 0.57 16 23 H 0.10 0.82 8.04 -52.49 -0.42 0.40 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 26 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 28 H 0.08 1.07 8.05 -51.93 -0.42 0.65 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.13 3.41 6.55 -51.93 -0.34 3.07 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.68 6.67 -51.93 -0.35 1.33 16 35 H 0.10 2.18 5.56 -51.93 -0.29 1.89 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -29.61 302.65 -7.19 -36.80 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.52 Total: 4.56 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -1.28 Total: -16.89 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.65 Total: -24.35 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.58 Total: -20.59 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.61 -7.19 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.958 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds