Wall clock time and date at job start Sun Mar 29 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99971 * 2 1 4 4 C 1.50698 * 119.99612 * 179.97438 * 2 1 3 5 5 C 1.53003 * 109.47151 * 95.00162 * 4 2 1 6 6 C 1.50694 * 109.47381 * 179.97438 * 5 4 2 7 7 O 1.20829 * 120.00052 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00194 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46758 * 29.99742 * 9 8 6 11 11 C 1.50697 * 109.47323 * 150.00089 * 9 8 6 12 12 H 1.08001 * 120.00051 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99978 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99946 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46923 * 89.99900 * 15 13 11 17 17 H 1.48504 * 109.46947 * 209.99709 * 15 13 11 18 18 H 1.48497 * 109.46828 * 329.99970 * 15 13 11 19 19 C 1.53003 * 109.46851 * 269.99901 * 9 8 6 20 20 C 1.53001 * 117.51964 * 356.28317 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.08002 * 119.99870 * 180.02562 * 1 2 3 23 23 H 1.08000 * 119.99705 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.46753 * 269.99748 * 3 2 1 25 25 H 1.08992 * 109.47025 * 29.99770 * 3 2 1 26 26 H 1.09005 * 109.46959 * 150.00262 * 3 2 1 27 27 H 1.09001 * 109.47597 * 335.00204 * 4 2 1 28 28 H 1.09004 * 109.46785 * 214.99804 * 4 2 1 29 29 H 1.09001 * 109.46835 * 59.99577 * 5 4 2 30 30 H 1.09002 * 109.47260 * 299.99988 * 5 4 2 31 31 H 0.97001 * 120.00567 * 179.97438 * 14 13 11 32 32 H 1.09002 * 115.54973 * 210.58100 * 19 9 8 33 33 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 34 34 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 35 35 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 36 36 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4363 6 6 3.1813 -2.9894 -1.4357 7 8 3.4051 -3.5574 -0.3930 8 8 3.6052 -3.5202 -2.5934 9 6 4.3244 -4.7793 -2.5172 10 1 3.9703 -5.3484 -1.6578 11 6 4.0859 -5.5711 -3.7770 12 1 3.4563 -5.1685 -4.5568 13 6 4.6704 -6.8099 -3.9337 14 7 5.4366 -7.3003 -2.9840 15 14 4.3742 -7.7917 -5.4951 16 1 5.4133 -7.4498 -6.4994 17 1 4.4417 -9.2430 -5.1874 18 1 3.0323 -7.4629 -6.0394 19 6 5.8215 -4.5029 -2.3643 20 6 6.2791 -3.0436 -2.4087 21 6 6.2841 -3.8069 -1.0827 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 -0.0004 24 1 2.2452 1.6197 -1.0277 25 1 1.4745 2.0647 0.5138 26 1 3.0160 1.1747 0.5138 27 1 1.4385 -2.0853 0.4352 28 1 2.9742 -1.1986 0.5900 29 1 3.0523 -0.9044 -1.8709 30 1 1.5167 -1.7911 -2.0257 31 1 5.8476 -8.1720 -3.0940 32 1 6.4844 -5.2517 -2.7978 33 1 7.2432 -2.8324 -2.8714 34 1 5.5137 -2.2802 -2.5473 35 1 5.5218 -3.5456 -0.3486 36 1 7.2514 -4.0979 -0.6731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:35 Heat of formation + Delta-G solvation = -76.836606 kcal Electronic energy + Delta-G solvation = -17087.077600 eV Core-core repulsion = 14343.543184 eV Total energy + Delta-G solvation = -2743.534416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.52302 -38.56333 -37.26885 -36.47474 -34.88141 -32.40321 -29.91668 -28.07498 -26.26360 -25.00406 -23.20195 -22.04838 -20.76691 -19.39194 -18.86679 -18.21681 -17.71583 -17.12087 -16.38470 -16.04828 -15.58381 -15.14199 -14.72985 -14.37312 -14.20140 -13.64957 -13.54158 -13.19100 -13.03681 -12.95685 -12.80238 -12.50231 -12.35327 -12.23678 -12.00663 -11.92890 -11.84526 -11.37348 -11.33281 -11.03574 -10.48196 -10.43973 -9.91870 -8.26864 -6.43643 1.29344 1.36900 1.42164 1.43681 1.54767 2.09614 2.43803 3.01463 3.14324 3.78063 3.94787 4.01152 4.06817 4.23074 4.27857 4.30187 4.32645 4.56482 4.70627 4.74802 4.89786 4.93383 4.95224 4.99085 5.09879 5.13657 5.20932 5.24451 5.29278 5.52165 5.56434 5.75358 5.91816 6.00484 6.13967 6.62038 7.01291 7.27653 8.80538 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.005738 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.367433 B = 4878.585650 C = 5315.882066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.098 4.098 6 C 0.442 3.558 7 O -0.548 6.548 8 O -0.360 6.360 9 C 0.253 3.747 10 H 0.005 0.995 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.979 3.021 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.146 4.146 20 C -0.166 4.166 21 C -0.199 4.199 22 H 0.094 0.906 23 H 0.116 0.884 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.269 0.731 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 14.496 2.416 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.107 4.107 5 C -0.135 4.135 6 C 0.287 3.713 7 O -0.439 6.439 8 O -0.277 6.277 9 C 0.200 3.800 10 H 0.022 0.978 11 C -0.584 4.584 12 H 0.085 0.915 13 C -0.181 4.181 14 N -0.551 5.551 15 Si 0.802 3.198 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.165 4.165 20 C -0.203 4.203 21 C -0.236 4.236 22 H 0.112 0.888 23 H 0.134 0.866 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.076 14.140 2.751 15.274 hybrid contribution 0.143 -1.203 -0.313 1.251 sum -4.933 12.938 2.438 14.059 Atomic orbital electron populations 1.23897 0.95053 1.02670 1.01174 1.21724 0.95652 0.95126 1.00718 1.20914 1.00140 0.93625 1.02987 1.20438 1.00675 0.95395 0.94231 1.21445 1.01292 0.90459 1.00320 1.24610 0.76688 0.88194 0.81783 1.90559 1.55734 1.63305 1.34318 1.86488 1.66588 1.39931 1.34660 1.19715 0.86230 0.77234 0.96843 0.97773 1.21259 1.31787 1.02413 1.02925 0.91505 1.25799 0.94035 0.97769 1.00528 1.70123 1.31605 1.18869 1.34463 0.85248 0.79135 0.77156 0.78273 1.19240 1.20432 1.18940 1.22707 0.97990 0.95228 1.00580 1.22886 1.02598 0.94754 1.00054 1.23114 1.02540 1.06231 0.91723 0.88779 0.86558 0.90433 0.90597 0.91906 0.91937 0.91256 0.85822 0.86510 0.92195 0.88149 0.87783 0.89073 0.89596 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.38 13.89 67.77 0.94 -2.44 16 2 C -0.13 -2.58 5.31 -16.50 -0.09 -2.67 16 3 C -0.12 -1.84 10.03 71.24 0.71 -1.12 16 4 C -0.07 -1.77 4.67 29.85 0.14 -1.63 16 5 C -0.10 -2.69 5.79 29.85 0.17 -2.52 16 6 C 0.44 18.02 6.81 71.23 0.48 18.50 16 7 O -0.55 -25.65 12.93 21.95 0.28 -25.36 16 8 O -0.36 -17.05 8.49 -51.39 -0.44 -17.49 16 9 C 0.25 13.91 2.39 29.85 0.07 13.98 16 10 H 0.00 0.29 7.16 -2.39 -0.02 0.27 16 11 C -0.55 -31.21 8.90 25.60 0.23 -30.98 16 12 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 13 C 0.02 1.04 5.16 84.65 0.44 1.48 16 14 N -0.91 -52.97 11.66 21.44 0.25 -52.72 16 15 Si 0.98 43.09 29.54 68.60 2.03 45.12 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 C -0.15 -7.41 5.23 -10.79 -0.06 -7.47 16 20 C -0.17 -6.77 9.74 30.59 0.30 -6.47 16 21 C -0.20 -8.75 9.87 30.60 0.30 -8.45 16 22 H 0.09 1.73 7.99 -2.91 -0.02 1.71 16 23 H 0.12 1.60 8.04 -2.91 -0.02 1.57 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 26 H 0.06 0.98 8.08 -2.38 -0.02 0.96 16 27 H 0.06 1.75 7.95 -2.39 -0.02 1.73 16 28 H 0.07 1.86 8.05 -2.38 -0.02 1.84 16 29 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.10 5.60 6.55 -2.39 -0.02 5.59 16 33 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.09 3.54 6.67 -2.39 -0.02 3.52 16 35 H 0.09 3.96 5.56 -2.39 -0.01 3.94 16 36 H 0.09 3.72 8.14 -2.38 -0.02 3.70 16 Total: -1.00 -65.85 302.65 6.81 -59.03 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 1.05 Total: 21.22 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 3.64 Total: -29.79 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.25 Total: -52.72 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.15 Total: -42.85 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.85 6.81 -59.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.805 kcal (2) G-P(sol) polarization free energy of solvation -65.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds