Wall clock time and date at job start Sun Mar 29 2020 22:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47008 * 2 1 4 4 C 1.50707 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.33078 * 119.99884 * 174.82266 * 4 3 2 6 6 C 1.46948 * 120.00122 * 5.40099 * 5 4 3 7 7 O 1.21534 * 120.00288 * 5.63767 * 6 5 4 8 8 O 1.34803 * 120.00244 * 185.64474 * 6 5 4 9 9 C 1.45203 * 117.00060 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47057 * 329.99983 * 9 8 6 11 11 C 1.50700 * 109.46837 * 209.99906 * 9 8 6 12 12 H 1.08000 * 120.00167 * 0.02562 * 11 9 8 13 13 C 1.37873 * 119.99779 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00385 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00041 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47001 * 90.00322 * 15 13 11 17 17 H 1.48501 * 109.47301 * 210.00421 * 15 13 11 18 18 H 1.48500 * 109.47191 * 330.00414 * 15 13 11 19 19 C 1.52992 * 109.47222 * 90.00001 * 9 8 6 20 20 C 1.53005 * 117.49866 * 8.74708 * 19 9 8 21 21 C 1.53004 * 117.50042 * 300.08712 * 19 9 8 22 22 H 1.08992 * 109.47263 * 60.00022 * 1 2 3 23 23 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47251 * 299.99938 * 1 2 3 25 25 H 1.08997 * 109.47094 * 239.99148 * 2 1 3 26 26 H 1.09006 * 109.46767 * 120.00268 * 2 1 3 27 27 H 1.09001 * 109.47487 * 60.00270 * 3 2 1 28 28 H 1.09000 * 109.46897 * 299.99800 * 3 2 1 29 29 H 1.08004 * 119.99778 * 354.55282 * 4 3 2 30 30 H 1.08005 * 120.00077 * 185.39629 * 5 4 3 31 31 H 0.97001 * 120.00202 * 180.02562 * 14 13 11 32 32 H 1.08994 * 115.55039 * 154.41301 * 19 9 8 33 33 H 1.09004 * 117.49664 * 359.97438 * 20 19 9 34 34 H 1.09002 * 117.49892 * 145.02028 * 20 19 9 35 35 H 1.08994 * 117.49771 * 214.97895 * 21 19 9 36 36 H 1.09002 * 117.49627 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2125 2.5902 -0.1033 6 6 3.4826 3.8656 -0.0990 7 8 2.2841 3.8793 0.1018 8 8 4.1425 5.0206 -0.3181 9 6 3.3574 6.2419 -0.3001 10 1 2.3419 6.0261 -0.6323 11 6 3.9834 7.2550 -1.2237 12 1 4.8811 7.0057 -1.7698 13 6 3.4094 8.4997 -1.3721 14 7 2.3159 8.8032 -0.7075 15 14 4.1848 9.7553 -2.5175 16 1 3.6124 9.6031 -3.8792 17 1 3.9058 11.1240 -2.0134 18 1 5.6527 9.5369 -2.5703 19 6 3.3201 6.8033 1.1226 20 6 4.2309 6.1498 2.1640 21 6 2.7186 5.9180 2.2159 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6766 1.9562 -0.8900 29 1 4.0870 0.5113 0.0898 30 1 5.2890 2.5844 -0.1906 31 1 1.9118 9.6788 -0.8123 32 1 3.1580 7.8784 1.1996 33 1 4.8562 5.3196 1.8356 34 1 4.6675 6.7950 2.9265 35 1 2.1611 6.4107 3.0124 36 1 2.3498 4.9354 1.9216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350299248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:38 Heat of formation + Delta-G solvation = -75.815557 kcal Electronic energy + Delta-G solvation = -17149.120683 eV Core-core repulsion = 14405.630543 eV Total energy + Delta-G solvation = -2743.490140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40511 -38.61306 -36.81882 -36.14270 -34.87536 -33.35541 -30.04569 -28.00208 -25.55920 -23.96324 -23.18308 -22.27770 -21.22893 -20.25958 -18.69502 -18.38208 -17.48242 -16.98092 -16.17835 -16.08933 -15.59775 -15.19824 -14.74634 -14.32784 -14.07519 -13.57829 -13.44296 -13.36311 -13.09976 -12.95382 -12.80003 -12.36002 -12.30529 -12.19584 -11.95710 -11.76715 -11.63462 -11.32942 -11.14260 -10.86483 -10.47521 -10.42045 -10.36131 -8.27091 -6.43598 0.30571 1.41033 1.42812 1.54523 2.11713 2.15624 2.46763 3.01007 3.15271 3.78306 4.02073 4.07050 4.17200 4.21573 4.26523 4.29294 4.55202 4.57353 4.74796 4.77338 4.86470 4.94103 4.98590 5.05066 5.16590 5.25129 5.28435 5.31165 5.35875 5.44726 5.51058 5.56584 5.64881 5.93773 6.15287 6.62342 7.06189 7.28388 8.80456 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.005905 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.884759 B = 4740.755560 C = 4925.933944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.029 4.029 5 C -0.221 4.221 6 C 0.466 3.534 7 O -0.540 6.540 8 O -0.361 6.361 9 C 0.256 3.744 10 H 0.004 0.996 11 C -0.546 4.546 12 H 0.065 0.935 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 0.979 3.021 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.263 1.263 19 C -0.147 4.147 20 C -0.167 4.167 21 C -0.198 4.198 22 H 0.043 0.957 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.181 0.819 30 H 0.159 0.841 31 H 0.269 0.731 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -14.704 2.722 15.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.139 4.139 4 C -0.047 4.047 5 C -0.240 4.240 6 C 0.314 3.686 7 O -0.434 6.434 8 O -0.278 6.278 9 C 0.202 3.798 10 H 0.022 0.978 11 C -0.583 4.583 12 H 0.083 0.917 13 C -0.181 4.181 14 N -0.552 5.552 15 Si 0.802 3.198 16 H -0.198 1.198 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.166 4.166 20 C -0.204 4.204 21 C -0.235 4.235 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.198 0.802 30 H 0.177 0.823 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.029 -14.498 2.809 14.906 hybrid contribution -0.235 1.222 -0.503 1.342 sum 1.794 -13.276 2.306 13.594 Atomic orbital electron populations 1.21785 0.96160 1.02120 1.01246 1.21619 0.95941 0.94709 1.03335 1.20986 0.92671 0.97991 1.02292 1.24321 0.96266 0.97864 0.86201 1.22245 1.01867 0.88224 1.11662 1.22517 0.86302 0.86780 0.72972 1.90742 1.17261 1.88464 1.46962 1.86573 1.43905 1.16472 1.80869 1.19661 0.89903 0.77577 0.92660 0.97815 1.21259 1.12575 0.98428 1.26076 0.91678 1.25798 0.95184 0.99681 0.97441 1.70111 1.20299 1.22728 1.42023 0.85243 0.79031 0.77267 0.78246 1.19773 1.20048 1.18697 1.22717 1.03788 0.99194 0.90906 1.22871 0.92316 1.03403 1.01789 1.23125 0.96277 1.01743 1.02388 0.93830 0.91013 0.93545 0.90514 0.90129 0.91189 0.92447 0.80199 0.82330 0.92166 0.87921 0.89250 0.87929 0.88898 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.15 5.87 30.59 0.18 -1.97 16 3 C -0.10 -2.70 3.79 29.85 0.11 -2.59 16 4 C -0.03 -0.64 9.65 24.53 0.24 -0.41 16 5 C -0.22 -6.52 10.15 23.40 0.24 -6.29 16 6 C 0.47 19.83 6.79 70.10 0.48 20.30 16 7 O -0.54 -25.29 10.29 19.73 0.20 -25.09 16 8 O -0.36 -17.84 8.39 -57.15 -0.48 -18.32 16 9 C 0.26 14.33 2.41 29.85 0.07 14.40 16 10 H 0.00 0.26 7.16 -2.39 -0.02 0.25 16 11 C -0.55 -31.76 8.90 25.60 0.23 -31.53 16 12 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 13 C 0.02 1.06 5.20 84.65 0.44 1.50 16 14 N -0.91 -53.53 11.59 21.45 0.25 -53.28 16 15 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 C -0.15 -7.62 5.27 -10.79 -0.06 -7.67 16 20 C -0.17 -7.07 9.80 30.62 0.30 -6.77 16 21 C -0.20 -8.86 9.85 30.62 0.30 -8.56 16 22 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.07 2.21 7.10 -2.39 -0.02 2.19 16 28 H 0.06 1.86 7.40 -2.39 -0.02 1.84 16 29 H 0.18 2.24 7.99 -2.91 -0.02 2.22 16 30 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.10 5.83 6.46 -2.39 -0.02 5.81 16 33 H 0.09 3.69 6.91 -2.38 -0.02 3.68 16 34 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 35 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.09 3.99 5.36 -2.39 -0.01 3.97 16 Total: -1.00 -67.81 298.27 6.29 -61.52 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.05 Total: 21.38 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.24 Total: -31.87 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.25 Total: -53.28 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.28 Total: -43.41 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.81 6.29 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350299248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.297 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds