Wall clock time and date at job start Sun Mar 29 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47287 * 2 1 4 4 C 1.50693 * 109.47340 * 179.97438 * 3 2 1 5 5 C 1.33084 * 119.99835 * 125.00370 * 4 3 2 6 6 C 1.46955 * 120.00048 * 180.02562 * 5 4 3 7 7 O 1.21533 * 120.00074 * 359.97438 * 6 5 4 8 8 O 1.34804 * 119.99661 * 179.72130 * 6 5 4 9 9 C 1.45202 * 116.99538 * 180.27086 * 8 6 5 10 10 H 1.09000 * 109.47281 * 330.00597 * 9 8 6 11 11 C 1.50699 * 109.47212 * 210.00320 * 9 8 6 12 12 H 1.07999 * 120.00056 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00046 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99936 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00043 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47042 * 59.99858 * 15 13 11 17 17 H 1.48496 * 109.47178 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47046 * 299.99829 * 15 13 11 19 19 C 1.53000 * 109.46662 * 90.00225 * 9 8 6 20 20 C 1.53004 * 117.50069 * 8.74740 * 19 9 8 21 21 C 1.52996 * 117.50308 * 300.08505 * 19 9 8 22 22 H 1.09002 * 109.47140 * 299.99892 * 1 2 3 23 23 H 1.08999 * 109.47099 * 59.99688 * 1 2 3 24 24 H 1.09007 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47140 * 240.00108 * 2 1 3 26 26 H 1.08997 * 109.47617 * 120.00285 * 2 1 3 27 27 H 1.09002 * 109.46942 * 59.99987 * 3 2 1 28 28 H 1.08997 * 109.47025 * 300.00648 * 3 2 1 29 29 H 1.08002 * 120.00482 * 305.00181 * 4 3 2 30 30 H 1.08001 * 120.00213 * 359.97438 * 5 4 3 31 31 H 0.97006 * 119.99920 * 179.97438 * 14 13 11 32 32 H 1.09008 * 115.54924 * 154.41019 * 19 9 8 33 33 H 1.09000 * 117.49849 * 359.97438 * 20 19 9 34 34 H 1.09004 * 117.49907 * 145.01642 * 20 19 9 35 35 H 1.08997 * 117.50332 * 214.98063 * 21 19 9 36 36 H 1.09004 * 117.49568 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2127 2.1035 -0.9433 6 6 5.6822 2.1031 -0.9430 7 8 6.2896 1.4995 -0.0806 8 8 6.3566 2.7680 -1.9024 9 6 7.8065 2.7193 -1.8432 10 1 8.1247 2.6207 -0.8053 11 6 8.3760 3.9875 -2.4248 12 1 7.7144 4.7537 -2.8010 13 6 9.7416 4.1696 -2.4768 14 7 10.5473 3.2364 -2.0192 15 14 10.4475 5.7413 -3.1985 16 1 9.9595 6.9070 -2.4185 17 1 11.9304 5.6910 -3.1389 18 1 10.0137 5.8753 -4.6125 19 6 8.3096 1.5186 -2.6470 20 6 7.2880 0.7576 -3.4945 21 6 7.8386 0.1295 -2.2117 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 4.0867 0.9062 0.7671 30 1 3.6730 2.6396 -1.7099 31 1 11.5082 3.3643 -2.0561 32 1 9.3230 1.6065 -3.0390 33 1 6.2573 1.1121 -3.4790 34 1 7.6293 0.3446 -4.4438 35 1 8.5419 -0.6965 -2.3176 36 1 7.1707 0.0710 -1.3523 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350299249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:42 Heat of formation + Delta-G solvation = -65.350598 kcal Electronic energy + Delta-G solvation = -16782.630115 eV Core-core repulsion = 14039.593769 eV Total energy + Delta-G solvation = -2743.036345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62101 -36.81111 -35.85776 -34.60994 -32.78743 -32.32605 -28.19183 -27.04598 -23.61520 -22.49773 -21.44225 -21.15433 -19.40240 -18.83059 -17.15323 -16.61927 -15.82024 -15.49256 -15.04400 -14.48997 -14.10097 -13.84510 -13.50854 -12.98717 -12.68717 -12.37367 -11.89871 -11.61885 -11.49235 -11.36176 -11.24531 -11.03795 -10.92832 -10.89186 -10.55195 -10.29367 -10.06349 -9.69079 -9.45291 -9.27291 -9.08977 -8.50233 -8.41773 -6.16858 -4.23992 1.51067 3.27852 3.31315 3.33529 3.62266 3.72346 4.34683 4.75472 4.81173 4.89067 4.97521 5.15680 5.18285 5.40269 5.41749 5.57747 5.62754 5.75649 5.83990 5.88784 5.93883 6.09389 6.11662 6.16971 6.48370 6.49150 6.55307 6.72103 6.94888 7.04816 7.22495 7.59523 7.61725 7.86564 8.14242 8.64826 8.90175 9.40340 10.90354 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038938 B = 0.005069 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.924994 B = 5522.360952 C = 5875.352203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.097 4.097 4 C -0.076 4.076 5 C -0.181 4.181 6 C 0.481 3.519 7 O -0.521 6.521 8 O -0.348 6.348 9 C 0.247 3.753 10 H 0.052 0.948 11 C -0.519 4.519 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.910 3.090 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.211 4.211 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.267 0.733 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 -4.449 1.729 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.200 4.200 6 C 0.327 3.673 7 O -0.413 6.413 8 O -0.264 6.264 9 C 0.195 3.805 10 H 0.070 0.930 11 C -0.557 4.557 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.523 5.523 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.135 4.135 20 C -0.231 4.231 21 C -0.247 4.247 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.321 -4.644 1.969 15.183 hybrid contribution 0.657 0.636 -0.391 0.995 sum -13.664 -4.007 1.578 14.326 Atomic orbital electron populations 1.21781 0.95618 1.01702 1.01864 1.21489 0.95785 0.96011 1.02728 1.20854 0.91496 0.97792 1.03224 1.23740 0.95865 0.93762 0.96137 1.22172 0.91229 1.04518 1.02117 1.21413 0.89477 0.76524 0.79900 1.90756 1.70754 1.41985 1.37850 1.86595 1.26306 1.65436 1.48066 1.20130 0.69295 0.93789 0.97315 0.93022 1.20923 0.91622 1.01232 1.41881 0.91226 1.24903 0.96385 0.97408 0.95175 1.69976 1.03878 1.33236 1.45216 0.86357 0.77655 0.82593 0.79678 1.19966 1.21058 1.19914 1.23022 0.99814 0.90191 1.00430 1.22804 0.99808 1.06317 0.94214 1.23149 1.04712 0.98544 0.98345 0.92696 0.92637 0.92674 0.91568 0.91591 0.90077 0.90805 0.85578 0.85001 0.92365 0.85279 0.89747 0.90448 0.90557 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 3 C -0.10 -0.91 5.66 -27.89 -0.16 -1.07 16 4 C -0.08 -1.00 9.09 -36.10 -0.33 -1.33 16 5 C -0.18 -2.87 9.76 -37.85 -0.37 -3.24 16 6 C 0.48 10.30 6.86 34.26 0.23 10.53 16 7 O -0.52 -12.34 13.32 -19.29 -0.26 -12.60 16 8 O -0.35 -8.42 8.39 -40.78 -0.34 -8.76 16 9 C 0.25 6.69 2.41 -27.88 -0.07 6.62 16 10 H 0.05 1.56 7.16 -51.93 -0.37 1.18 16 11 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 13 C 0.06 1.76 5.20 -17.82 -0.09 1.67 16 14 N -0.89 -25.20 11.59 55.43 0.64 -24.56 16 15 Si 0.91 21.11 29.54 -169.99 -5.02 16.08 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.12 -2.94 5.27 -90.62 -0.48 -3.41 16 20 C -0.19 -4.22 9.80 -26.69 -0.26 -4.48 16 21 C -0.21 -4.73 9.85 -26.69 -0.26 -5.00 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.64 7.82 -51.93 -0.41 0.24 16 29 H 0.13 1.76 7.49 -52.49 -0.39 1.37 16 30 H 0.13 1.79 7.88 -52.49 -0.41 1.38 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.13 3.54 6.46 -51.92 -0.34 3.20 16 33 H 0.08 1.80 6.91 -51.93 -0.36 1.44 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.09 2.17 5.36 -51.93 -0.28 1.89 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -30.19 303.12 -7.77 -37.96 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -5.48 Total: 3.85 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.88 Total: -16.55 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.64 Total: -24.56 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.60 Total: -21.36 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.19 -7.77 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350299249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.392 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds