Wall clock time and date at job start Sun Mar 29 2020 22:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47287 * 2 1 4 4 C 1.50693 * 109.47340 * 179.97438 * 3 2 1 5 5 C 1.33084 * 119.99835 * 125.00370 * 4 3 2 6 6 C 1.46955 * 120.00048 * 180.02562 * 5 4 3 7 7 O 1.21533 * 120.00074 * 359.97438 * 6 5 4 8 8 O 1.34804 * 119.99661 * 179.72130 * 6 5 4 9 9 C 1.45202 * 116.99538 * 180.27086 * 8 6 5 10 10 H 1.09000 * 109.47281 * 330.00597 * 9 8 6 11 11 C 1.50699 * 109.47212 * 210.00320 * 9 8 6 12 12 H 1.07999 * 120.00056 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00046 * 180.02562 * 11 9 8 14 14 N 1.31513 * 119.99936 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 120.00043 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47042 * 59.99858 * 15 13 11 17 17 H 1.48496 * 109.47178 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.47046 * 299.99829 * 15 13 11 19 19 C 1.53000 * 109.46662 * 90.00225 * 9 8 6 20 20 C 1.53004 * 117.50069 * 8.74740 * 19 9 8 21 21 C 1.52996 * 117.50308 * 300.08505 * 19 9 8 22 22 H 1.09002 * 109.47140 * 299.99892 * 1 2 3 23 23 H 1.08999 * 109.47099 * 59.99688 * 1 2 3 24 24 H 1.09007 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47140 * 240.00108 * 2 1 3 26 26 H 1.08997 * 109.47617 * 120.00285 * 2 1 3 27 27 H 1.09002 * 109.46942 * 59.99987 * 3 2 1 28 28 H 1.08997 * 109.47025 * 300.00648 * 3 2 1 29 29 H 1.08002 * 120.00482 * 305.00181 * 4 3 2 30 30 H 1.08001 * 120.00213 * 359.97438 * 5 4 3 31 31 H 0.97006 * 119.99920 * 179.97438 * 14 13 11 32 32 H 1.09008 * 115.54924 * 154.41019 * 19 9 8 33 33 H 1.09000 * 117.49849 * 359.97438 * 20 19 9 34 34 H 1.09004 * 117.49907 * 145.01642 * 20 19 9 35 35 H 1.08997 * 117.50332 * 214.98063 * 21 19 9 36 36 H 1.09004 * 117.49568 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2127 2.1035 -0.9433 6 6 5.6822 2.1031 -0.9430 7 8 6.2896 1.4995 -0.0806 8 8 6.3566 2.7680 -1.9024 9 6 7.8065 2.7193 -1.8432 10 1 8.1247 2.6207 -0.8053 11 6 8.3760 3.9875 -2.4248 12 1 7.7144 4.7537 -2.8010 13 6 9.7416 4.1696 -2.4768 14 7 10.5473 3.2364 -2.0192 15 14 10.4475 5.7413 -3.1985 16 1 9.9595 6.9070 -2.4185 17 1 11.9304 5.6910 -3.1389 18 1 10.0137 5.8753 -4.6125 19 6 8.3096 1.5186 -2.6470 20 6 7.2880 0.7576 -3.4945 21 6 7.8386 0.1295 -2.2117 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 4.0867 0.9062 0.7671 30 1 3.6730 2.6396 -1.7099 31 1 11.5082 3.3643 -2.0561 32 1 9.3230 1.6065 -3.0390 33 1 6.2573 1.1121 -3.4790 34 1 7.6293 0.3446 -4.4438 35 1 8.5419 -0.6965 -2.3176 36 1 7.1707 0.0710 -1.3523 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350299249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:42 Heat of formation + Delta-G solvation = -81.037440 kcal Electronic energy + Delta-G solvation = -16783.310347 eV Core-core repulsion = 14039.593769 eV Total energy + Delta-G solvation = -2743.716578 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39818 -38.47988 -36.95828 -36.42416 -34.88358 -33.33038 -30.08335 -28.16833 -25.50779 -23.86832 -23.19758 -22.14567 -21.07858 -20.37454 -18.93526 -18.48890 -17.54407 -17.30766 -16.50924 -15.80108 -15.60617 -15.05115 -14.78559 -14.33665 -14.18852 -13.76233 -13.31167 -13.26552 -13.05004 -12.78344 -12.66351 -12.36865 -12.29157 -12.21859 -12.07294 -11.99434 -11.58870 -11.37865 -11.35379 -11.04397 -10.50128 -10.44696 -10.41624 -8.27183 -6.44236 0.20027 1.41410 1.45438 1.53298 2.07266 2.07856 2.44072 3.00284 3.13579 3.79480 3.98486 4.05227 4.18381 4.21621 4.24743 4.25706 4.27419 4.64900 4.71088 4.73738 4.85511 4.90888 4.95644 5.00157 5.21525 5.22706 5.23745 5.27863 5.43451 5.45764 5.50456 5.53855 5.55317 5.89144 6.10207 6.60742 6.99140 7.26613 8.80167 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038938 B = 0.005069 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.924994 B = 5522.360952 C = 5875.352203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.036 4.036 5 C -0.210 4.210 6 C 0.473 3.527 7 O -0.556 6.556 8 O -0.357 6.357 9 C 0.254 3.746 10 H 0.004 0.996 11 C -0.548 4.548 12 H 0.067 0.933 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 0.981 3.019 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.147 4.147 20 C -0.166 4.166 21 C -0.201 4.201 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.157 0.843 31 H 0.270 0.730 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.651 -4.340 0.963 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.130 4.130 4 C -0.055 4.055 5 C -0.229 4.229 6 C 0.322 3.678 7 O -0.450 6.450 8 O -0.273 6.273 9 C 0.200 3.800 10 H 0.022 0.978 11 C -0.585 4.585 12 H 0.085 0.915 13 C -0.182 4.182 14 N -0.551 5.551 15 Si 0.804 3.196 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.188 1.188 19 C -0.166 4.166 20 C -0.203 4.203 21 C -0.238 4.238 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.175 0.825 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.244 -4.545 1.204 16.911 hybrid contribution 1.159 0.519 -0.023 1.270 sum -15.085 -4.026 1.181 15.657 Atomic orbital electron populations 1.21760 0.94173 1.02284 1.02494 1.21493 0.97002 0.95086 1.02472 1.20974 0.88156 0.98906 1.04956 1.24089 0.98063 0.89896 0.93461 1.22132 0.87557 1.08147 1.05020 1.22455 0.91530 0.75212 0.78626 1.90729 1.71886 1.43478 1.38896 1.86574 1.24829 1.66514 1.49383 1.19725 0.70997 0.94517 0.94744 0.97820 1.21225 0.92460 1.02005 1.42835 0.91504 1.25826 0.96418 1.00841 0.95100 1.70108 1.04182 1.35115 1.45671 0.85267 0.77007 0.78156 0.79179 1.19322 1.20238 1.18817 1.22732 0.99711 0.91140 1.03042 1.22878 0.98959 1.03665 0.94778 1.23134 1.04574 0.97364 0.98699 0.91907 0.92182 0.92203 0.92253 0.91593 0.87965 0.89319 0.86742 0.82510 0.92115 0.87684 0.89277 0.87729 0.88678 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.77 5.92 30.59 0.18 -1.59 16 3 C -0.09 -1.45 5.66 29.85 0.17 -1.28 16 4 C -0.04 -0.89 9.09 24.53 0.22 -0.67 16 5 C -0.21 -6.44 9.76 23.40 0.23 -6.21 16 6 C 0.47 20.75 6.86 70.11 0.48 21.24 16 7 O -0.56 -27.43 13.32 19.73 0.26 -27.17 16 8 O -0.36 -17.78 8.39 -57.16 -0.48 -18.26 16 9 C 0.25 14.33 2.41 29.85 0.07 14.41 16 10 H 0.00 0.26 7.16 -2.39 -0.02 0.25 16 11 C -0.55 -31.89 8.90 25.60 0.23 -31.67 16 12 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 13 C 0.02 1.03 5.20 84.65 0.44 1.47 16 14 N -0.91 -53.48 11.59 21.44 0.25 -53.23 16 15 Si 0.98 43.53 29.54 68.60 2.03 45.55 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 19 C -0.15 -7.67 5.27 -10.79 -0.06 -7.73 16 20 C -0.17 -7.06 9.80 30.62 0.30 -6.76 16 21 C -0.20 -9.07 9.85 30.62 0.30 -8.77 16 22 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.21 7.82 -2.39 -0.02 1.19 16 29 H 0.11 3.10 7.49 -2.91 -0.02 3.08 16 30 H 0.16 3.96 7.88 -2.91 -0.02 3.94 16 31 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 32 H 0.11 5.96 6.46 -2.38 -0.02 5.94 16 33 H 0.09 3.70 6.91 -2.39 -0.02 3.68 16 34 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.09 3.88 8.14 -2.39 -0.02 3.86 16 36 H 0.08 3.95 5.36 -2.38 -0.01 3.93 16 Total: -1.00 -68.07 303.12 6.39 -61.69 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 1.05 Total: 19.93 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.28 Total: -28.51 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.25 Total: -53.23 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.22 Total: -45.43 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -68.07 6.39 -61.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350299249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.350 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds