Wall clock time and date at job start Sun Mar 29 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47495 * 2 1 4 4 C 1.50694 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.33086 * 120.00173 * 135.73804 * 4 3 2 6 6 C 1.46949 * 119.99806 * 15.17403 * 5 4 3 7 7 O 1.21538 * 119.99931 * 6.76893 * 6 5 4 8 8 O 1.34801 * 120.00190 * 187.05077 * 6 5 4 9 9 C 1.45194 * 117.00189 * 179.72768 * 8 6 5 10 10 H 1.08992 * 109.47658 * 29.99275 * 9 8 6 11 11 C 1.50699 * 109.47364 * 149.99717 * 9 8 6 12 12 H 1.07997 * 120.00063 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00255 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00109 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00080 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47432 * 60.00348 * 15 13 11 17 17 H 1.48503 * 109.47216 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47313 * 299.99878 * 15 13 11 19 19 C 1.53000 * 109.46895 * 269.99579 * 9 8 6 20 20 C 1.52994 * 117.50332 * 128.75015 * 19 9 8 21 21 C 1.52996 * 117.50182 * 60.08257 * 19 9 8 22 22 H 1.08992 * 109.46914 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46584 * 299.99961 * 1 2 3 24 24 H 1.08997 * 109.46812 * 59.99510 * 1 2 3 25 25 H 1.09002 * 109.47079 * 240.00029 * 2 1 3 26 26 H 1.09000 * 109.47304 * 120.00496 * 2 1 3 27 27 H 1.09002 * 109.46933 * 59.99940 * 3 2 1 28 28 H 1.09003 * 109.46829 * 300.00222 * 3 2 1 29 29 H 1.07997 * 120.00151 * 315.73483 * 4 3 2 30 30 H 1.07995 * 120.00024 * 195.17251 * 5 4 3 31 31 H 0.97002 * 120.00575 * 179.97438 * 14 13 11 32 32 H 1.09008 * 115.54714 * 274.41873 * 19 9 8 33 33 H 1.09006 * 117.49722 * 359.97438 * 20 19 9 34 34 H 1.08998 * 117.50366 * 145.02129 * 20 19 9 35 35 H 1.08993 * 117.50524 * 214.97780 * 21 19 9 36 36 H 1.09004 * 117.49787 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2122 2.2679 -0.8052 6 6 3.5157 3.3960 -1.4389 7 8 2.3666 3.6491 -1.1345 8 8 4.1493 4.1467 -2.3620 9 6 3.3980 5.2409 -2.9505 10 1 2.6731 5.6144 -2.2273 11 6 4.3430 6.3505 -3.3335 12 1 5.4023 6.2442 -3.1522 13 6 3.8553 7.5015 -3.9152 14 7 2.5653 7.6312 -4.1355 15 14 5.0267 8.8771 -4.3892 16 1 6.0149 8.3686 -5.3740 17 1 4.2584 9.9957 -4.9924 18 1 5.7380 9.3607 -3.1787 19 6 2.6641 4.7430 -4.1973 20 6 1.1657 5.0347 -4.2988 21 6 1.6513 3.6108 -4.0160 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 4.0873 0.7725 0.6518 30 1 5.2639 2.1087 -0.9923 31 1 2.2220 8.4411 -4.5444 32 1 3.2433 4.7572 -5.1207 33 1 0.7024 5.5809 -3.4771 34 1 0.7588 5.2402 -5.2889 35 1 1.5636 2.8803 -4.8202 36 1 1.5080 3.2202 -3.0085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350299250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:45 Heat of formation + Delta-G solvation = -56.072861 kcal Electronic energy + Delta-G solvation = -17210.160260 eV Core-core repulsion = 14467.526227 eV Total energy + Delta-G solvation = -2742.634032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63712 -36.85097 -35.47632 -34.61744 -32.61392 -32.22534 -28.05907 -26.76904 -23.62208 -22.33182 -21.25705 -21.21590 -19.45566 -18.84287 -16.95247 -16.55092 -15.60624 -15.08461 -14.86354 -14.50386 -13.93465 -13.81865 -13.31950 -12.98562 -12.63124 -12.48084 -11.99531 -11.51613 -11.37173 -11.25966 -11.01290 -10.92855 -10.87682 -10.61950 -10.39469 -10.22206 -9.80337 -9.33863 -9.25901 -9.08741 -8.96344 -8.61123 -8.38829 -6.11926 -4.19635 1.53256 3.28999 3.32669 3.34766 3.62655 3.81191 4.38527 4.88877 5.04272 5.09190 5.13703 5.19967 5.44077 5.50870 5.75984 5.80136 5.84065 5.90710 5.97729 6.14856 6.18096 6.24716 6.36256 6.44400 6.50758 6.56590 6.66326 6.88046 7.03301 7.20267 7.32589 7.45935 7.67048 7.89830 8.16818 8.69652 8.94624 9.44887 10.94827 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036968 B = 0.006118 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.225155 B = 4575.886593 C = 5061.352756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.068 4.068 5 C -0.191 4.191 6 C 0.481 3.519 7 O -0.515 6.515 8 O -0.350 6.350 9 C 0.249 3.751 10 H 0.048 0.952 11 C -0.528 4.528 12 H 0.068 0.932 13 C 0.069 3.931 14 N -0.874 5.874 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.114 4.114 20 C -0.124 4.124 21 C -0.229 4.229 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 -11.868 5.592 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.155 4.155 4 C -0.087 4.087 5 C -0.210 4.210 6 C 0.328 3.672 7 O -0.409 6.409 8 O -0.266 6.266 9 C 0.196 3.804 10 H 0.066 0.934 11 C -0.566 4.566 12 H 0.086 0.914 13 C -0.135 4.135 14 N -0.510 5.510 15 Si 0.734 3.266 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.133 4.133 20 C -0.161 4.161 21 C -0.266 4.266 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.309 -11.603 5.549 12.928 hybrid contribution 0.558 0.834 -0.408 1.083 sum -0.751 -10.769 5.141 11.957 Atomic orbital electron populations 1.21751 0.95724 1.01161 1.02245 1.21525 0.96039 0.96701 1.01531 1.21327 0.91780 0.96664 1.05757 1.23741 0.96891 0.95068 0.92992 1.22166 1.01393 0.96296 1.01161 1.21413 0.84749 0.83135 0.77879 1.90681 1.18270 1.69425 1.62499 1.86590 1.46998 1.43087 1.49882 1.20169 0.91208 0.80157 0.88872 0.93411 1.20886 0.94186 0.99143 1.42390 0.91413 1.24870 0.95468 0.98005 0.95150 1.70037 1.11759 1.27467 1.41716 0.86428 0.80515 0.80843 0.78861 1.20041 1.21129 1.20067 1.22588 0.91344 0.98733 1.00603 1.22361 0.97514 0.95081 1.01126 1.23276 1.09101 0.92394 1.01808 0.93054 0.92750 0.92399 0.92158 0.92459 0.90364 0.87475 0.85653 0.84815 0.92617 0.89432 0.89352 0.90854 0.91140 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 3 C -0.12 -1.62 4.55 -27.89 -0.13 -1.75 16 4 C -0.07 -0.88 9.57 -36.10 -0.35 -1.23 16 5 C -0.19 -2.99 10.13 -37.85 -0.38 -3.37 16 6 C 0.48 10.08 6.89 34.26 0.24 10.31 16 7 O -0.52 -11.51 10.48 -19.29 -0.20 -11.71 16 8 O -0.35 -8.45 9.85 -40.77 -0.40 -8.85 16 9 C 0.25 6.63 2.25 -27.88 -0.06 6.57 16 10 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 11 C -0.53 -14.85 8.88 -34.44 -0.31 -15.16 16 12 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 13 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 14 N -0.87 -24.41 11.43 55.43 0.63 -23.78 16 15 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.11 -2.83 4.47 -90.62 -0.41 -3.23 16 20 C -0.12 -2.88 9.04 -26.69 -0.24 -3.12 16 21 C -0.23 -4.97 9.81 -26.69 -0.26 -5.23 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.11 1.81 5.33 -51.93 -0.28 1.54 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.09 2.25 8.11 -51.92 -0.42 1.82 16 33 H 0.09 2.19 8.05 -51.93 -0.42 1.77 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 2.07 5.37 -51.93 -0.28 1.79 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -29.30 300.48 -7.77 -37.07 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.53 Total: 3.76 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.78 Total: -17.09 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.63 Total: -23.78 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.60 Total: -20.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.30 -7.77 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350299250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.003 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds