Wall clock time and date at job start Sun Mar 29 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47495 * 2 1 4 4 C 1.50694 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.33086 * 120.00173 * 135.73804 * 4 3 2 6 6 C 1.46949 * 119.99806 * 15.17403 * 5 4 3 7 7 O 1.21538 * 119.99931 * 6.76893 * 6 5 4 8 8 O 1.34801 * 120.00190 * 187.05077 * 6 5 4 9 9 C 1.45194 * 117.00189 * 179.72768 * 8 6 5 10 10 H 1.08992 * 109.47658 * 29.99275 * 9 8 6 11 11 C 1.50699 * 109.47364 * 149.99717 * 9 8 6 12 12 H 1.07997 * 120.00063 * 359.97438 * 11 9 8 13 13 C 1.37875 * 120.00255 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00109 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00080 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47432 * 60.00348 * 15 13 11 17 17 H 1.48503 * 109.47216 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47313 * 299.99878 * 15 13 11 19 19 C 1.53000 * 109.46895 * 269.99579 * 9 8 6 20 20 C 1.52994 * 117.50332 * 128.75015 * 19 9 8 21 21 C 1.52996 * 117.50182 * 60.08257 * 19 9 8 22 22 H 1.08992 * 109.46914 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46584 * 299.99961 * 1 2 3 24 24 H 1.08997 * 109.46812 * 59.99510 * 1 2 3 25 25 H 1.09002 * 109.47079 * 240.00029 * 2 1 3 26 26 H 1.09000 * 109.47304 * 120.00496 * 2 1 3 27 27 H 1.09002 * 109.46933 * 59.99940 * 3 2 1 28 28 H 1.09003 * 109.46829 * 300.00222 * 3 2 1 29 29 H 1.07997 * 120.00151 * 315.73483 * 4 3 2 30 30 H 1.07995 * 120.00024 * 195.17251 * 5 4 3 31 31 H 0.97002 * 120.00575 * 179.97438 * 14 13 11 32 32 H 1.09008 * 115.54714 * 274.41873 * 19 9 8 33 33 H 1.09006 * 117.49722 * 359.97438 * 20 19 9 34 34 H 1.08998 * 117.50366 * 145.02129 * 20 19 9 35 35 H 1.08993 * 117.50524 * 214.97780 * 21 19 9 36 36 H 1.09004 * 117.49787 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2122 2.2679 -0.8052 6 6 3.5157 3.3960 -1.4389 7 8 2.3666 3.6491 -1.1345 8 8 4.1493 4.1467 -2.3620 9 6 3.3980 5.2409 -2.9505 10 1 2.6731 5.6144 -2.2273 11 6 4.3430 6.3505 -3.3335 12 1 5.4023 6.2442 -3.1522 13 6 3.8553 7.5015 -3.9152 14 7 2.5653 7.6312 -4.1355 15 14 5.0267 8.8771 -4.3892 16 1 6.0149 8.3686 -5.3740 17 1 4.2584 9.9957 -4.9924 18 1 5.7380 9.3607 -3.1787 19 6 2.6641 4.7430 -4.1973 20 6 1.1657 5.0347 -4.2988 21 6 1.6513 3.6108 -4.0160 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 4.0873 0.7725 0.6518 30 1 5.2639 2.1087 -0.9923 31 1 2.2220 8.4411 -4.5444 32 1 3.2433 4.7572 -5.1207 33 1 0.7024 5.5809 -3.4771 34 1 0.7588 5.2402 -5.2889 35 1 1.5636 2.8803 -4.8202 36 1 1.5080 3.2202 -3.0085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350299250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:45 Heat of formation + Delta-G solvation = -71.121513 kcal Electronic energy + Delta-G solvation = -17210.812818 eV Core-core repulsion = 14467.526227 eV Total energy + Delta-G solvation = -2743.286591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32484 -38.54031 -36.98940 -36.16635 -34.70520 -33.31084 -29.99858 -27.98065 -25.48820 -23.86646 -23.07839 -22.25155 -21.31973 -20.43022 -18.69916 -18.42973 -17.14678 -16.86883 -16.28883 -16.09238 -15.70192 -15.00919 -14.66798 -14.50783 -14.03568 -13.84873 -13.39578 -13.35472 -13.02236 -12.90483 -12.72282 -12.29923 -12.28445 -12.13960 -11.85075 -11.80047 -11.62771 -11.25310 -10.96186 -10.73084 -10.58164 -10.45440 -10.23465 -8.21330 -6.38501 0.27657 1.41975 1.45096 1.52665 2.11812 2.16473 2.47697 3.05902 3.25121 3.85560 4.03780 4.09538 4.19684 4.24246 4.30659 4.44386 4.55573 4.58398 4.71117 4.75311 4.80314 4.97367 5.05637 5.10667 5.17290 5.26821 5.28534 5.36965 5.39494 5.47343 5.47799 5.54135 5.73349 5.89999 6.21244 6.65281 7.09073 7.32415 8.84841 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.036968 B = 0.006118 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.225155 B = 4575.886593 C = 5061.352756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.126 4.126 4 C -0.027 4.027 5 C -0.222 4.222 6 C 0.469 3.531 7 O -0.540 6.540 8 O -0.366 6.366 9 C 0.255 3.745 10 H 0.006 0.994 11 C -0.559 4.559 12 H 0.061 0.939 13 C 0.026 3.974 14 N -0.895 5.895 15 Si 0.974 3.026 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.271 1.271 19 C -0.132 4.132 20 C -0.122 4.122 21 C -0.198 4.198 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.178 0.822 30 H 0.158 0.842 31 H 0.267 0.733 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -13.569 6.084 14.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.163 4.163 4 C -0.045 4.045 5 C -0.240 4.240 6 C 0.318 3.682 7 O -0.434 6.434 8 O -0.282 6.282 9 C 0.201 3.799 10 H 0.024 0.976 11 C -0.597 4.597 12 H 0.080 0.920 13 C -0.176 4.176 14 N -0.531 5.531 15 Si 0.798 3.202 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.196 1.196 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.235 4.235 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.195 0.805 30 H 0.175 0.825 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.556 -13.326 6.051 14.646 hybrid contribution 0.226 1.277 -0.446 1.372 sum -0.330 -12.048 5.606 13.293 Atomic orbital electron populations 1.21775 0.95775 1.02148 1.01415 1.21490 0.96015 0.94533 1.03011 1.21337 0.92677 0.98477 1.03805 1.24241 0.96421 0.93287 0.90512 1.22211 1.02497 0.96084 1.03247 1.22478 0.84860 0.83823 0.77023 1.90678 1.19421 1.70231 1.63108 1.86571 1.47367 1.43008 1.51304 1.19779 0.90429 0.81101 0.88541 0.97588 1.21176 0.94187 1.00683 1.43638 0.92040 1.25715 0.97197 1.00091 0.94610 1.70153 1.13269 1.28097 1.41594 0.85373 0.78463 0.77677 0.78675 1.19199 1.20219 1.19613 1.22392 0.91837 1.01541 0.99349 1.22275 0.96368 0.96217 1.01047 1.23262 1.05752 0.91937 1.02526 0.91128 0.92678 0.94239 0.91831 0.89665 0.90543 0.91201 0.80492 0.82457 0.92378 0.90464 0.91691 0.89304 0.88039 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.23 16 2 C -0.11 -2.12 5.92 30.60 0.18 -1.94 16 3 C -0.13 -3.25 4.55 29.85 0.14 -3.12 16 4 C -0.03 -0.61 9.57 24.53 0.23 -0.37 16 5 C -0.22 -6.64 10.13 23.40 0.24 -6.40 16 6 C 0.47 20.16 6.89 70.10 0.48 20.64 16 7 O -0.54 -25.20 10.48 19.71 0.21 -24.99 16 8 O -0.37 -18.39 9.85 -57.13 -0.56 -18.95 16 9 C 0.25 14.24 2.25 29.85 0.07 14.31 16 10 H 0.01 0.40 6.92 -2.39 -0.02 0.38 16 11 C -0.56 -32.57 8.88 25.60 0.23 -32.34 16 12 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 13 C 0.03 1.45 5.30 84.65 0.45 1.89 16 14 N -0.90 -51.16 11.43 21.45 0.25 -50.91 16 15 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.13 -6.77 4.47 -10.80 -0.05 -6.82 16 20 C -0.12 -5.80 9.04 30.62 0.28 -5.53 16 21 C -0.20 -8.64 9.81 30.62 0.30 -8.34 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 2.40 5.33 -2.39 -0.01 2.38 16 29 H 0.18 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 31 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.08 4.07 8.11 -2.38 -0.02 4.05 16 33 H 0.06 3.38 8.05 -2.38 -0.02 3.36 16 34 H 0.09 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.09 3.96 5.37 -2.38 -0.01 3.95 16 Total: -1.00 -66.64 300.48 6.22 -60.42 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.04 Total: 19.07 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.26 Total: -30.24 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.25 Total: -50.91 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.36 Total: -43.94 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.64 6.22 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350299250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.698 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds