Wall clock time and date at job start Sun Mar 29 2020 21:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 N 1.30497 * 125.65285 * 274.69718 * 4 3 2 6 6 C 1.34124 * 109.25951 * 179.89391 * 5 4 3 7 7 C 1.34676 * 108.01781 * 0.36336 * 6 5 4 8 8 N 1.35046 * 125.64723 * 95.00136 * 4 3 2 9 9 H 0.97001 * 126.39361 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 11 11 O 1.21583 * 119.99855 * 179.72907 * 10 2 1 12 12 N 1.34771 * 119.99547 * 359.97438 * 10 2 1 13 13 C 1.46506 * 119.99515 * 179.97438 * 12 10 2 14 14 C 1.50699 * 109.46931 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47573 * 89.99885 * 18 16 14 20 20 H 1.48500 * 109.47098 * 209.99844 * 18 16 14 21 21 H 1.48499 * 109.47317 * 329.99495 * 18 16 14 22 22 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 23 23 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 24 24 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 25 25 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 26 26 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 27 27 H 1.07993 * 125.99542 * 180.18625 * 6 5 4 28 28 H 1.08001 * 126.59240 * 179.81714 * 7 6 5 29 29 H 0.96999 * 120.00409 * 0.02562 * 12 10 2 30 30 H 1.08996 * 109.47564 * 300.00635 * 13 12 10 31 31 H 1.09000 * 109.46872 * 60.00432 * 13 12 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 7 3.4499 1.3239 -2.1668 6 6 3.3511 1.9075 -3.3704 7 6 2.2511 2.6845 -3.3676 8 7 1.6784 2.5556 -2.1311 9 1 0.8702 2.9943 -1.8225 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1673 -0.0045 12 7 1.4649 -2.3344 0.0016 13 6 2.1974 -3.6032 0.0016 14 6 1.2181 -4.7485 0.0022 15 1 0.1563 -4.5511 0.0022 16 6 1.6776 -6.0486 0.0028 17 7 2.9706 -6.2889 0.0024 18 14 0.4637 -7.4682 0.0029 19 1 0.1424 -7.8450 -1.3971 20 1 1.0633 -8.6322 0.7036 21 1 -0.7798 -7.0563 0.7024 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1383 0.5138 27 1 4.0353 1.7792 -4.1960 28 1 1.8900 3.2920 -4.1842 29 1 0.4949 -2.3343 0.0016 30 1 2.8235 -3.6613 -0.8888 31 1 2.8247 -3.6605 0.8911 32 1 3.2939 -7.2034 0.0025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352693138.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:24 Heat of formation + Delta-G solvation = 38.767238 kcal Electronic energy + Delta-G solvation = -16598.885634 eV Core-core repulsion = 13789.116584 eV Total energy + Delta-G solvation = -2809.769049 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.94756 -39.29343 -35.25843 -34.11674 -32.41506 -32.31721 -30.44644 -27.38149 -27.03233 -25.20232 -22.41093 -21.52745 -20.57942 -19.35521 -18.23648 -17.60180 -16.04858 -15.91684 -15.27149 -14.76462 -14.42446 -14.22518 -13.74463 -13.37327 -13.24619 -13.02424 -12.78898 -12.45368 -11.99216 -11.68523 -11.61851 -10.90924 -10.83920 -10.23732 -9.94821 -9.78872 -9.30661 -9.28819 -8.66232 -8.54785 -8.35724 -7.68100 -6.09466 -4.15926 1.98880 2.99631 3.12193 3.28133 3.33821 3.36292 3.57901 4.00860 4.36036 4.50646 4.81866 4.97409 5.09702 5.14493 5.26309 5.42582 5.51412 5.64900 5.68343 5.86154 6.09555 6.68588 6.80007 7.12857 7.35574 7.57498 7.61118 7.66417 7.90862 8.08232 8.25938 8.82165 8.97645 9.40365 9.55123 11.00820 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.005065 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.610400 B = 5527.343527 C = 5687.027495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.639 5.639 3 C 0.221 3.779 4 C 0.192 3.808 5 N -0.457 5.457 6 C -0.029 4.029 7 C -0.063 4.063 8 N -0.568 5.568 9 H 0.414 0.586 10 C 0.694 3.306 11 O -0.576 6.576 12 N -0.729 5.729 13 C 0.267 3.733 14 C -0.541 4.541 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.884 5.884 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.167 0.833 28 H 0.174 0.826 29 H 0.384 0.616 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 18.542 -2.642 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.380 5.380 3 C 0.094 3.906 4 C -0.074 4.074 5 N -0.176 5.176 6 C -0.178 4.178 7 C -0.197 4.197 8 N -0.172 5.172 9 H 0.251 0.749 10 C 0.395 3.605 11 O -0.453 6.453 12 N -0.383 5.383 13 C 0.145 3.855 14 C -0.579 4.579 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.218 0.782 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.248 17.741 -2.405 18.962 hybrid contribution -2.231 0.001 -0.459 2.277 sum -8.479 17.741 -2.865 19.871 Atomic orbital electron populations 1.21644 0.80527 1.02416 1.01429 1.47102 1.05668 1.04742 1.80458 1.19401 0.99690 0.84679 0.86785 1.24072 0.90440 0.94908 0.97947 1.70430 1.21664 1.22611 1.02927 1.22465 0.98945 0.99533 0.96858 1.22707 0.99459 1.08119 0.89425 1.43368 1.23881 1.37490 1.12468 0.74910 1.16082 0.85637 0.80322 0.78466 1.90921 1.11341 1.85751 1.57240 1.45838 1.09511 1.05634 1.77278 1.18980 0.91984 0.76830 0.97668 1.21216 0.92894 0.90762 1.53067 0.92112 1.24941 0.95371 0.98855 0.94844 1.69987 1.12530 1.20722 1.48945 0.86425 0.80821 0.81533 0.78148 1.20534 1.21016 1.19827 0.92602 0.92280 0.91141 0.89539 0.86704 0.81546 0.80903 0.78178 0.95724 0.95689 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 10.20 59.85 0.61 1.54 16 2 N -0.64 -10.08 2.86 -188.74 -0.54 -10.62 16 3 C 0.22 2.98 6.03 -5.19 -0.03 2.95 16 4 C 0.19 2.78 7.73 -155.41 -1.20 1.58 16 5 N -0.46 -8.29 11.25 -10.82 -0.12 -8.41 16 6 C -0.03 -0.41 11.87 -17.81 -0.21 -0.63 16 7 C -0.06 -0.67 12.04 -16.56 -0.20 -0.87 16 8 N -0.57 -5.84 6.15 -10.22 -0.06 -5.90 16 9 H 0.41 2.58 8.96 -40.82 -0.37 2.22 16 10 C 0.69 15.19 8.28 -86.92 -0.72 14.48 16 11 O -0.58 -15.18 15.92 5.29 0.08 -15.09 16 12 N -0.73 -16.44 5.41 -66.41 -0.36 -16.80 16 13 C 0.27 7.41 5.43 -5.19 -0.03 7.39 16 14 C -0.54 -15.09 9.28 -34.44 -0.32 -15.41 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.88 -26.70 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 24 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 25 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 26 H 0.11 1.80 7.42 -51.92 -0.39 1.42 16 27 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 28 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.38 7.45 6.05 -40.82 -0.25 7.20 16 30 H 0.02 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -37.52 283.44 -7.02 -44.54 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.81 Total: 5.07 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -2.20 Total: 12.73 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -0.35 Total: -67.69 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -37.52 -7.02 -44.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352693138.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.308 kcal (2) G-P(sol) polarization free energy of solvation -37.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds