Wall clock time and date at job start Sun Mar 29 2020 21:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 N 1.30497 * 125.65285 * 274.69718 * 4 3 2 6 6 C 1.34124 * 109.25951 * 179.89391 * 5 4 3 7 7 C 1.34676 * 108.01781 * 0.36336 * 6 5 4 8 8 N 1.35046 * 125.64723 * 95.00136 * 4 3 2 9 9 H 0.97001 * 126.39361 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 11 11 O 1.21583 * 119.99855 * 179.72907 * 10 2 1 12 12 N 1.34771 * 119.99547 * 359.97438 * 10 2 1 13 13 C 1.46506 * 119.99515 * 179.97438 * 12 10 2 14 14 C 1.50699 * 109.46931 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47573 * 89.99885 * 18 16 14 20 20 H 1.48500 * 109.47098 * 209.99844 * 18 16 14 21 21 H 1.48499 * 109.47317 * 329.99495 * 18 16 14 22 22 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 23 23 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 24 24 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 25 25 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 26 26 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 27 27 H 1.07993 * 125.99542 * 180.18625 * 6 5 4 28 28 H 1.08001 * 126.59240 * 179.81714 * 7 6 5 29 29 H 0.96999 * 120.00409 * 0.02562 * 12 10 2 30 30 H 1.08996 * 109.47564 * 300.00635 * 13 12 10 31 31 H 1.09000 * 109.46872 * 60.00432 * 13 12 10 32 32 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 7 3.4499 1.3239 -2.1668 6 6 3.3511 1.9075 -3.3704 7 6 2.2511 2.6845 -3.3676 8 7 1.6784 2.5556 -2.1311 9 1 0.8702 2.9943 -1.8225 10 6 2.1389 -1.1673 0.0005 11 8 3.3547 -1.1673 -0.0045 12 7 1.4649 -2.3344 0.0016 13 6 2.1974 -3.6032 0.0016 14 6 1.2181 -4.7485 0.0022 15 1 0.1563 -4.5511 0.0022 16 6 1.6776 -6.0486 0.0028 17 7 2.9706 -6.2889 0.0024 18 14 0.4637 -7.4682 0.0029 19 1 0.1424 -7.8450 -1.3971 20 1 1.0633 -8.6322 0.7036 21 1 -0.7798 -7.0563 0.7024 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5139 25 1 1.6085 2.0284 0.5138 26 1 3.1500 1.1383 0.5138 27 1 4.0353 1.7792 -4.1960 28 1 1.8900 3.2920 -4.1842 29 1 0.4949 -2.3343 0.0016 30 1 2.8235 -3.6613 -0.8888 31 1 2.8247 -3.6605 0.8911 32 1 3.2939 -7.2034 0.0025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352693138.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:23 Heat of formation + Delta-G solvation = 8.840078 kcal Electronic energy + Delta-G solvation = -16600.183373 eV Core-core repulsion = 13789.116584 eV Total energy + Delta-G solvation = -2811.066788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.93704 -40.92535 -36.73099 -36.10712 -34.35800 -33.42797 -31.61025 -29.26415 -28.12470 -26.61588 -24.42001 -22.51045 -21.72976 -20.97091 -19.68863 -18.75291 -17.97015 -17.47101 -16.75924 -16.46973 -15.77806 -15.26954 -15.01587 -14.84751 -14.70255 -14.48162 -14.03681 -13.76869 -13.63389 -13.37020 -12.93756 -12.76754 -12.69147 -12.18446 -11.46277 -11.13469 -10.97814 -10.84933 -10.78891 -10.03520 -9.54485 -9.34451 -8.27015 -6.44339 1.00967 1.43557 1.47190 1.58192 1.79738 2.17514 2.32137 2.39668 2.45098 3.07603 3.30089 3.56094 4.07247 4.23524 4.36762 4.47234 4.62175 4.71286 4.77603 4.87251 5.07740 5.13671 5.27710 5.47191 5.57346 5.70684 5.82451 5.86490 6.08465 6.59688 6.67375 7.21293 7.26306 7.28666 7.76387 8.85702 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.005065 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.610400 B = 5527.343527 C = 5687.027495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.627 5.627 3 C 0.219 3.781 4 C 0.174 3.826 5 N -0.529 5.529 6 C -0.078 4.078 7 C -0.024 4.024 8 N -0.544 5.544 9 H 0.438 0.562 10 C 0.687 3.313 11 O -0.632 6.632 12 N -0.724 5.724 13 C 0.287 3.713 14 C -0.554 4.554 15 H 0.084 0.916 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.989 3.011 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.253 1.253 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.148 0.852 26 H 0.081 0.919 27 H 0.171 0.829 28 H 0.222 0.778 29 H 0.402 0.598 30 H -0.023 1.023 31 H -0.015 1.015 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 20.104 -2.951 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.365 5.365 3 C 0.093 3.907 4 C -0.092 4.092 5 N -0.249 5.249 6 C -0.226 4.226 7 C -0.160 4.160 8 N -0.150 5.150 9 H 0.279 0.721 10 C 0.388 3.612 11 O -0.513 6.513 12 N -0.379 5.379 13 C 0.163 3.837 14 C -0.592 4.592 15 H 0.102 0.898 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.812 3.188 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.176 1.176 22 H 0.098 0.902 23 H 0.120 0.880 24 H 0.080 0.920 25 H 0.166 0.834 26 H 0.100 0.900 27 H 0.188 0.812 28 H 0.239 0.761 29 H 0.239 0.761 30 H -0.005 1.005 31 H 0.003 0.997 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.309 19.397 -2.701 22.132 hybrid contribution -0.972 -0.334 -0.414 1.108 sum -11.281 19.063 -3.115 22.369 Atomic orbital electron populations 1.22011 0.77004 1.04113 1.03565 1.47051 1.07725 1.03274 1.78496 1.19664 0.99296 0.84731 0.86981 1.23927 0.90866 0.96232 0.98173 1.70311 1.24395 1.25049 1.05163 1.22807 1.01516 1.01791 0.96491 1.23319 0.97140 1.05599 0.89918 1.43213 1.23963 1.36051 1.11750 0.72064 1.16360 0.85139 0.81698 0.77963 1.90879 1.14122 1.86878 1.59401 1.45417 1.10107 1.04528 1.77880 1.18372 0.91846 0.79866 0.93599 1.21578 0.93747 0.90860 1.53011 0.89814 1.26120 0.97449 1.02350 0.93791 1.70167 1.15307 1.21693 1.49898 0.85098 0.78329 0.76835 0.78560 1.19684 1.20871 1.17639 0.90195 0.88004 0.92050 0.83435 0.90039 0.81186 0.76114 0.76055 1.00488 0.99690 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.39 10.20 127.77 1.30 2.69 16 2 N -0.63 -19.03 2.86 -869.32 -2.48 -21.52 16 3 C 0.22 5.61 6.03 85.63 0.52 6.12 16 4 C 0.17 4.84 7.73 138.13 1.07 5.91 16 5 N -0.53 -19.71 11.25 -188.13 -2.12 -21.83 16 6 C -0.08 -2.23 11.87 83.53 0.99 -1.24 16 7 C -0.02 -0.44 12.04 83.09 1.00 0.56 16 8 N -0.54 -9.20 6.15 -186.26 -1.15 -10.35 16 9 H 0.44 3.12 8.96 -92.71 -0.83 2.28 16 10 C 0.69 31.10 8.28 179.05 1.48 32.59 16 11 O -0.63 -35.62 15.92 -3.98 -0.06 -35.68 16 12 N -0.72 -33.53 5.41 -482.29 -2.61 -36.14 16 13 C 0.29 16.85 5.43 85.63 0.46 17.31 16 14 C -0.55 -31.30 9.28 25.60 0.24 -31.07 16 15 H 0.08 4.24 7.60 -2.91 -0.02 4.22 16 16 C 0.00 0.13 5.46 84.66 0.46 0.59 16 17 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 18 Si 0.99 43.17 29.54 68.60 2.03 45.19 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.10 1.07 8.07 -2.39 -0.02 1.05 16 24 H 0.06 1.28 6.36 -2.39 -0.02 1.27 16 25 H 0.15 1.90 8.07 -2.39 -0.02 1.88 16 26 H 0.08 2.66 7.42 -2.38 -0.02 2.64 16 27 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.22 1.74 8.06 -2.91 -0.02 1.72 16 29 H 0.40 15.38 6.05 -92.71 -0.56 14.81 16 30 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 31 H -0.01 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -90.05 283.44 1.18 -88.88 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.24 Total: 15.89 kcal Atomic # 6 Polarization: 25.95 SS G_CDS: 7.53 Total: 33.48 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -8.07 Total: -147.75 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.06 Total: -35.68 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -90.05 1.18 -88.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352693138.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.715 kcal (2) G-P(sol) polarization free energy of solvation -90.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds