Wall clock time and date at job start Sun Mar 29 2020 22:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47479 * 299.99603 * 3 2 1 6 6 H 1.48504 * 109.47151 * 59.99563 * 3 2 1 7 7 C 1.38812 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99746 * 206.05795 * 7 2 1 9 9 N 1.36932 * 119.99765 * 26.06908 * 7 2 1 10 10 C 1.46504 * 120.00180 * 9.47408 * 9 7 2 11 11 C 1.50696 * 109.46979 * 270.00112 * 10 9 7 12 12 N 1.27648 * 125.77064 * 0.02805 * 11 10 9 13 13 O 1.41380 * 113.16962 * 180.30073 * 12 11 10 14 14 C 1.44250 * 107.50676 * 342.62836 * 13 12 11 15 15 C 1.51681 * 125.76720 * 180.02562 * 11 10 9 16 16 C 1.46502 * 119.99764 * 189.47504 * 9 7 2 17 17 C 1.54271 * 110.02961 * 60.57042 * 16 9 7 18 18 C 1.54972 * 104.15566 * 217.13403 * 17 16 9 19 19 C 1.54883 * 102.77701 * 37.88873 * 18 17 16 20 20 C 1.53871 * 110.03651 * 303.35065 * 16 9 7 21 21 H 0.97005 * 119.99551 * 354.73503 * 1 2 3 22 22 H 1.09000 * 109.47023 * 150.00210 * 10 9 7 23 23 H 1.09002 * 109.47054 * 30.00269 * 10 9 7 24 24 H 1.09001 * 111.00993 * 143.18039 * 14 13 12 25 25 H 1.09007 * 111.00871 * 267.03983 * 14 13 12 26 26 H 1.09002 * 110.80703 * 77.05413 * 15 11 10 27 27 H 1.09001 * 110.80677 * 313.54284 * 15 11 10 28 28 H 1.08998 * 110.01526 * 181.95614 * 16 9 7 29 29 H 1.08996 * 110.48800 * 335.78099 * 17 16 9 30 30 H 1.09003 * 110.48232 * 98.43134 * 17 16 9 31 31 H 1.09001 * 110.71909 * 279.57563 * 18 17 16 32 32 H 1.08994 * 110.91861 * 156.30071 * 18 17 16 33 33 H 1.08999 * 110.48702 * 203.40038 * 19 18 17 34 34 H 1.09004 * 110.60058 * 80.81390 * 19 18 17 35 35 H 1.08998 * 110.03442 * 238.56969 * 20 16 9 36 36 H 1.09008 * 110.02981 * 359.95191 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0079 -1.2495 0.4114 9 7 1.4300 -2.3279 -0.5201 10 6 0.1704 -2.2268 -1.2615 11 6 -0.9870 -2.3767 -0.3081 12 7 -0.8969 -2.5625 0.9515 13 8 -2.1540 -2.6731 1.5888 14 6 -3.1455 -2.1369 0.6887 15 6 -2.4560 -2.3320 -0.6832 16 6 2.0687 -3.6334 -0.3357 17 6 2.1821 -3.9584 1.1681 18 6 3.5469 -4.6811 1.2978 19 6 4.4410 -3.9066 0.2979 20 6 3.5042 -3.6008 -0.8890 21 1 -0.4850 0.8366 0.0771 22 1 0.1268 -3.0154 -2.0127 23 1 0.1142 -1.2548 -1.7514 24 1 -4.0729 -2.7069 0.7445 25 1 -3.3252 -1.0807 0.8896 26 1 -2.7669 -3.2701 -1.1431 27 1 -2.6617 -1.4892 -1.3431 28 1 1.4908 -4.4064 -0.8422 29 1 2.1784 -3.0418 1.7579 30 1 1.3703 -4.6163 1.4784 31 1 3.4583 -5.7276 1.0063 32 1 3.9376 -4.5958 2.3117 33 1 5.2769 -4.5266 -0.0258 34 1 4.8043 -2.9814 0.7453 35 1 3.6231 -4.3585 -1.6634 36 1 3.7253 -2.6138 -1.2955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473176231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:00 Heat of formation + Delta-G solvation = 40.175486 kcal Electronic energy + Delta-G solvation = -18095.643445 eV Core-core repulsion = 15389.475806 eV Total energy + Delta-G solvation = -2706.167640 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.80109 -37.67340 -34.60795 -31.72001 -30.75841 -29.43890 -27.82196 -27.01889 -25.95805 -22.78535 -22.01073 -19.92881 -19.07401 -18.68228 -16.44387 -15.56704 -15.41003 -15.01993 -14.67661 -14.05270 -13.76950 -13.10060 -12.91823 -12.54654 -12.31061 -12.15827 -11.53648 -11.16040 -11.06876 -10.80326 -10.73674 -10.62043 -10.41139 -10.26511 -10.25538 -10.12696 -9.94099 -9.74477 -9.58882 -9.17912 -8.52653 -7.99792 -6.92550 -5.78637 -3.04999 3.38440 3.44844 3.49405 3.51926 4.38712 4.50600 5.08629 5.28518 5.43105 5.45526 5.49714 5.56170 5.62333 5.75885 5.83806 6.10323 6.11877 6.26606 6.28710 6.30600 6.43176 6.45651 6.50990 6.55569 6.61856 6.69394 6.87917 6.97311 7.05932 7.24447 7.37657 7.46059 7.87085 8.31120 8.98976 9.20046 9.86027 10.29578 11.28891 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.012554 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.355625 B = 2229.785206 C = 3356.997608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.001 4.001 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.579 5.579 10 C 0.237 3.763 11 C 0.124 3.876 12 N -0.258 5.258 13 O -0.248 6.248 14 C 0.021 3.979 15 C -0.149 4.149 16 C 0.174 3.826 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.118 4.118 20 C -0.135 4.135 21 H 0.251 0.749 22 H 0.040 0.960 23 H 0.100 0.900 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -6.231 -3.858 7.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.365 4.365 8 H 0.097 0.903 9 N -0.297 5.297 10 C 0.109 3.891 11 C -0.073 4.073 12 N -0.006 5.006 13 O -0.260 6.260 14 C -0.058 4.058 15 C -0.189 4.189 16 C 0.067 3.933 17 C -0.167 4.167 18 C -0.164 4.164 19 C -0.156 4.156 20 C -0.174 4.174 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.281 -6.281 -2.855 6.905 hybrid contribution -0.556 1.337 -0.426 1.509 sum -0.275 -4.944 -3.281 5.940 Atomic orbital electron populations 1.69920 1.05001 1.25008 1.54836 1.24670 0.95140 0.97888 1.02093 0.86263 0.79480 0.84366 0.77017 1.20519 1.21832 1.22304 1.19108 0.97814 0.84989 1.34556 0.90339 1.44273 1.21740 1.02526 1.61163 1.19475 0.80412 1.00305 0.88940 1.27157 0.94696 0.91320 0.94105 1.78087 0.97397 1.16315 1.08801 1.91146 1.13453 1.81908 1.39493 1.23749 0.93388 0.99312 0.89327 1.23056 0.93992 1.02583 0.99297 1.20969 0.91877 0.86926 0.93565 1.22793 0.94361 1.00350 0.99158 1.22477 0.97269 0.98356 0.98293 1.22258 0.97139 0.99413 0.96786 1.22601 0.96520 1.01562 0.96710 0.93872 0.94182 0.88222 0.90352 0.91933 0.90475 0.89404 0.93193 0.90084 0.93234 0.92817 0.92870 0.93326 0.92059 0.93575 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 9.03 55.49 0.50 -23.76 16 2 C 0.00 -0.02 4.85 -17.43 -0.08 -0.11 16 3 Si 0.90 21.36 29.63 -169.99 -5.04 16.32 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.02 7.67 -15.06 -0.12 -6.13 16 8 H 0.08 2.03 7.61 -52.49 -0.40 1.63 16 9 N -0.58 -13.30 2.18 -165.75 -0.36 -13.67 16 10 C 0.24 5.17 5.54 -5.19 -0.03 5.14 16 11 C 0.12 2.76 5.19 -78.58 -0.41 2.35 16 12 N -0.26 -6.46 11.77 35.65 0.42 -6.04 16 13 O -0.25 -5.89 12.52 -11.36 -0.14 -6.03 16 14 C 0.02 0.39 8.24 38.10 0.31 0.71 16 15 C -0.15 -2.69 7.07 -26.46 -0.19 -2.88 16 16 C 0.17 3.48 3.42 -66.81 -0.23 3.25 16 17 C -0.13 -2.55 6.42 -25.02 -0.16 -2.71 16 18 C -0.13 -2.07 6.91 -24.70 -0.17 -2.24 16 19 C -0.12 -1.93 6.83 -25.08 -0.17 -2.10 16 20 C -0.13 -2.39 6.09 -25.62 -0.16 -2.55 16 21 H 0.25 6.77 8.32 -40.82 -0.34 6.43 16 22 H 0.04 0.75 7.92 -51.93 -0.41 0.34 16 23 H 0.10 2.35 6.41 -51.93 -0.33 2.01 16 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.05 0.95 7.82 -51.93 -0.41 0.55 16 29 H 0.08 1.91 7.14 -51.93 -0.37 1.54 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.51 7.18 -51.92 -0.37 1.14 16 LS Contribution 288.50 15.07 4.35 4.35 Total: -1.00 -28.81 288.50 -7.33 -36.14 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.66 Total: -0.06 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.40 Total: -7.26 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.56 Total: -43.46 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.14 Total: -6.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.04 Total: 16.32 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.81 -7.33 -36.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473176231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.314 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds