Wall clock time and date at job start Sun Mar 29 2020 22:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47479 * 299.99603 * 3 2 1 6 6 H 1.48504 * 109.47151 * 59.99563 * 3 2 1 7 7 C 1.38812 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99746 * 206.05795 * 7 2 1 9 9 N 1.36932 * 119.99765 * 26.06908 * 7 2 1 10 10 C 1.46504 * 120.00180 * 9.47408 * 9 7 2 11 11 C 1.50696 * 109.46979 * 270.00112 * 10 9 7 12 12 N 1.27648 * 125.77064 * 0.02805 * 11 10 9 13 13 O 1.41380 * 113.16962 * 180.30073 * 12 11 10 14 14 C 1.44250 * 107.50676 * 342.62836 * 13 12 11 15 15 C 1.51681 * 125.76720 * 180.02562 * 11 10 9 16 16 C 1.46502 * 119.99764 * 189.47504 * 9 7 2 17 17 C 1.54271 * 110.02961 * 60.57042 * 16 9 7 18 18 C 1.54972 * 104.15566 * 217.13403 * 17 16 9 19 19 C 1.54883 * 102.77701 * 37.88873 * 18 17 16 20 20 C 1.53871 * 110.03651 * 303.35065 * 16 9 7 21 21 H 0.97005 * 119.99551 * 354.73503 * 1 2 3 22 22 H 1.09000 * 109.47023 * 150.00210 * 10 9 7 23 23 H 1.09002 * 109.47054 * 30.00269 * 10 9 7 24 24 H 1.09001 * 111.00993 * 143.18039 * 14 13 12 25 25 H 1.09007 * 111.00871 * 267.03983 * 14 13 12 26 26 H 1.09002 * 110.80703 * 77.05413 * 15 11 10 27 27 H 1.09001 * 110.80677 * 313.54284 * 15 11 10 28 28 H 1.08998 * 110.01526 * 181.95614 * 16 9 7 29 29 H 1.08996 * 110.48800 * 335.78099 * 17 16 9 30 30 H 1.09003 * 110.48232 * 98.43134 * 17 16 9 31 31 H 1.09001 * 110.71909 * 279.57563 * 18 17 16 32 32 H 1.08994 * 110.91861 * 156.30071 * 18 17 16 33 33 H 1.08999 * 110.48702 * 203.40038 * 19 18 17 34 34 H 1.09004 * 110.60058 * 80.81390 * 19 18 17 35 35 H 1.08998 * 110.03442 * 238.56969 * 20 16 9 36 36 H 1.09008 * 110.02981 * 359.95191 * 20 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0079 -1.2495 0.4114 9 7 1.4300 -2.3279 -0.5201 10 6 0.1704 -2.2268 -1.2615 11 6 -0.9870 -2.3767 -0.3081 12 7 -0.8969 -2.5625 0.9515 13 8 -2.1540 -2.6731 1.5888 14 6 -3.1455 -2.1369 0.6887 15 6 -2.4560 -2.3320 -0.6832 16 6 2.0687 -3.6334 -0.3357 17 6 2.1821 -3.9584 1.1681 18 6 3.5469 -4.6811 1.2978 19 6 4.4410 -3.9066 0.2979 20 6 3.5042 -3.6008 -0.8890 21 1 -0.4850 0.8366 0.0771 22 1 0.1268 -3.0154 -2.0127 23 1 0.1142 -1.2548 -1.7514 24 1 -4.0729 -2.7069 0.7445 25 1 -3.3252 -1.0807 0.8896 26 1 -2.7669 -3.2701 -1.1431 27 1 -2.6617 -1.4892 -1.3431 28 1 1.4908 -4.4064 -0.8422 29 1 2.1784 -3.0418 1.7579 30 1 1.3703 -4.6163 1.4784 31 1 3.4583 -5.7276 1.0063 32 1 3.9376 -4.5958 2.3117 33 1 5.2769 -4.5266 -0.0258 34 1 4.8043 -2.9814 0.7453 35 1 3.6231 -4.3585 -1.6634 36 1 3.7253 -2.6138 -1.2955 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473176231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:59 Heat of formation + Delta-G solvation = 23.727718 kcal Electronic energy + Delta-G solvation = -18096.356674 eV Core-core repulsion = 15389.475806 eV Total energy + Delta-G solvation = -2706.880869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.46021 -39.24275 -36.29994 -33.51917 -32.54263 -31.00751 -29.28879 -28.59859 -27.81345 -24.51250 -23.58479 -21.34658 -20.71163 -20.39691 -18.24385 -17.25862 -17.00398 -16.64083 -16.24127 -15.84711 -15.42845 -14.78162 -14.54468 -14.05171 -13.85482 -13.78001 -13.26092 -12.95158 -12.73319 -12.58636 -12.38131 -12.22551 -12.04378 -11.86974 -11.76371 -11.70928 -11.57993 -11.30611 -11.20776 -10.85620 -10.44980 -9.72443 -8.76788 -7.77735 -5.02263 1.45443 1.51049 1.57879 1.79989 2.57385 2.80075 3.33207 3.44823 3.92068 4.02129 4.03849 4.07022 4.21199 4.29253 4.34802 4.66040 4.69905 4.80446 4.81493 4.93175 4.96895 4.98956 5.02813 5.04787 5.24800 5.25753 5.34026 5.36531 5.56221 5.68878 5.74604 5.77157 5.85497 6.39473 7.19846 7.36290 7.99554 8.37481 9.27113 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.017076 B = 0.012554 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.355625 B = 2229.785206 C = 3356.997608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.048 4.048 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.311 1.311 7 C -0.225 4.225 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.234 3.766 11 C 0.123 3.877 12 N -0.306 5.306 13 O -0.275 6.275 14 C 0.016 3.984 15 C -0.141 4.141 16 C 0.167 3.833 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.128 4.128 21 H 0.240 0.760 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.050 0.950 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -7.856 -5.135 9.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.243 4.243 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.240 1.240 7 C -0.356 4.356 8 H 0.086 0.914 9 N -0.308 5.308 10 C 0.105 3.895 11 C -0.073 4.073 12 N -0.055 5.055 13 O -0.287 6.287 14 C -0.062 4.062 15 C -0.181 4.181 16 C 0.060 3.940 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.167 4.167 21 H 0.050 0.950 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.136 0.864 25 H 0.068 0.932 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.644 -7.927 -4.146 8.969 hybrid contribution -0.678 1.787 -0.025 1.911 sum -0.033 -6.140 -4.171 7.423 Atomic orbital electron populations 1.70056 1.05498 1.24396 1.56460 1.25152 0.95841 0.99814 1.03445 0.85483 0.78790 0.81787 0.76005 1.20007 1.21806 1.24018 1.19151 0.97278 0.86044 1.33080 0.91394 1.44439 1.22347 1.03017 1.60969 1.19559 0.79984 1.00550 0.89373 1.27445 0.96939 0.89340 0.93613 1.78083 0.98534 1.18550 1.10307 1.91081 1.14143 1.82420 1.41074 1.24010 0.93987 0.99266 0.88918 1.23067 0.91064 1.04816 0.99158 1.21219 0.93271 0.85896 0.93623 1.22639 0.96443 0.98518 0.98587 1.22438 0.94694 0.99249 0.98987 1.22241 0.97760 0.99245 0.95955 1.22509 0.95063 1.01308 0.97808 0.94980 0.90627 0.90137 0.86357 0.93170 0.86985 0.88318 0.91846 0.94550 0.94281 0.90245 0.92220 0.90124 0.93759 0.90731 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 9.03 21.65 0.20 -50.02 16 2 C -0.05 -2.56 4.85 84.86 0.41 -2.14 16 3 Si 0.95 44.86 29.63 68.60 2.03 46.89 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16 7 C -0.23 -11.65 7.67 84.03 0.64 -11.01 16 8 H 0.07 3.60 7.61 -2.91 -0.02 3.57 16 9 N -0.59 -26.95 2.18 -678.31 -1.48 -28.43 16 10 C 0.23 9.98 5.54 85.63 0.47 10.45 16 11 C 0.12 5.37 5.19 46.89 0.24 5.61 16 12 N -0.31 -15.41 11.77 -40.62 -0.48 -15.88 16 13 O -0.27 -13.08 12.52 -38.29 -0.48 -13.56 16 14 C 0.02 0.58 8.24 72.59 0.60 1.18 16 15 C -0.14 -4.80 7.07 30.77 0.22 -4.59 16 16 C 0.17 6.43 3.42 45.72 0.16 6.59 16 17 C -0.12 -4.86 6.42 31.70 0.20 -4.66 16 18 C -0.12 -3.55 6.91 31.91 0.22 -3.32 16 19 C -0.11 -3.44 6.83 31.67 0.22 -3.23 16 20 C -0.13 -4.25 6.09 31.32 0.19 -4.06 16 21 H 0.24 13.29 8.32 -92.70 -0.77 12.52 16 22 H 0.08 2.65 7.92 -2.39 -0.02 2.63 16 23 H 0.08 3.78 6.41 -2.39 -0.02 3.76 16 24 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 25 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.06 2.26 7.82 -2.39 -0.02 2.25 16 29 H 0.04 1.75 7.14 -2.39 -0.02 1.74 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 2.09 7.18 -2.38 -0.02 2.07 16 Total: -1.00 -63.56 288.50 4.41 -59.14 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.05 Total: 11.03 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.58 Total: -9.18 kcal Atomic # 7 Polarization: -92.57 SS G_CDS: -1.76 Total: -94.33 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.48 Total: -13.56 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.56 4.41 -59.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473176231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.871 kcal (2) G-P(sol) polarization free energy of solvation -63.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds