Wall clock time and date at job start Sun Mar 29 2020 22:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46566 * 2 1 4 4 C 1.50705 * 109.47314 * 119.99287 * 2 1 3 5 5 H 1.07992 * 119.99814 * 120.00494 * 4 2 1 6 6 C 1.37880 * 119.99999 * 300.00639 * 4 2 1 7 7 N 1.31515 * 119.99778 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46912 * 89.99936 * 8 6 4 10 10 H 1.48497 * 109.46896 * 209.99870 * 8 6 4 11 11 H 1.48502 * 109.47129 * 329.99949 * 8 6 4 12 12 C 1.50701 * 109.47491 * 239.99850 * 2 1 3 13 13 O 1.20823 * 119.99606 * 239.99980 * 12 2 1 14 14 O 1.34228 * 119.99868 * 59.99623 * 12 2 1 15 15 C 1.45200 * 116.99960 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47367 * 210.00096 * 15 14 12 17 17 C 1.53002 * 117.49888 * 356.25163 * 16 15 14 18 18 C 1.53000 * 117.50107 * 64.90925 * 16 15 14 19 19 C 1.52997 * 109.47178 * 89.99615 * 15 14 12 20 20 C 1.52999 * 117.50135 * 8.74958 * 19 15 14 21 21 C 1.52999 * 117.50014 * 300.09035 * 19 15 14 22 22 H 1.09003 * 109.46566 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47688 * 300.00057 * 1 2 3 24 24 H 1.09001 * 109.47443 * 60.00572 * 1 2 3 25 25 H 0.97007 * 119.99572 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.46620 * 329.99955 * 15 14 12 27 27 H 1.09002 * 115.54951 * 210.58137 * 16 15 14 28 28 H 1.09000 * 117.49996 * 215.00804 * 17 16 15 29 29 H 1.08999 * 117.49664 * 0.02562 * 17 16 15 30 30 H 1.09008 * 117.49673 * 359.97438 * 18 16 15 31 31 H 1.08999 * 117.49942 * 144.97366 * 18 16 15 32 32 H 1.09007 * 115.54802 * 154.41877 * 19 15 14 33 33 H 1.09003 * 117.49627 * 359.97438 * 20 19 15 34 34 H 1.09000 * 117.50333 * 145.01510 * 20 19 15 35 35 H 1.09007 * 117.49663 * 214.97595 * 21 19 15 36 36 H 1.08999 * 117.49841 * 359.97283 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3213 -1.1199 4.0081 9 1 3.6296 -0.5453 4.4124 10 1 1.3431 -0.9488 5.1121 11 1 2.4860 -2.5658 3.7122 12 6 2.0324 -0.7104 -1.2304 13 8 2.7271 -1.6927 -1.1194 14 8 1.7081 -0.2519 -2.4496 15 6 2.2269 -0.9864 -3.5896 16 6 2.4320 -0.0273 -4.7638 17 6 1.9949 1.4265 -4.5732 18 6 3.4837 1.0721 -4.6026 19 6 1.2311 -2.0769 -3.9897 20 6 -0.1392 -2.0665 -3.3093 21 6 0.8891 -3.1397 -2.9435 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 0.7085 1.1615 3.4844 26 1 3.1797 -1.4443 -3.3237 27 1 2.3085 -0.4642 -5.7548 28 1 1.5837 1.9460 -5.4387 29 1 1.5616 1.6997 -3.6111 30 1 4.0292 1.1124 -3.6597 31 1 4.0524 1.3583 -5.4874 32 1 1.2729 -2.3922 -5.0323 33 1 -0.3312 -1.2829 -2.5763 34 1 -0.9989 -2.3751 -3.9041 35 1 0.7055 -4.1540 -3.2979 36 1 1.3739 -3.0622 -1.9703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519345325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:46 Heat of formation + Delta-G solvation = -46.205712 kcal Electronic energy + Delta-G solvation = -17710.804321 eV Core-core repulsion = 14968.598160 eV Total energy + Delta-G solvation = -2742.206161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15410 -37.52231 -36.08372 -34.88854 -33.88186 -30.63452 -27.94341 -25.21076 -23.28761 -22.28875 -21.99037 -21.02998 -20.36149 -19.17911 -16.72079 -16.46817 -16.13185 -15.69537 -15.01098 -14.63102 -14.08470 -13.61142 -13.28502 -12.77709 -12.11691 -12.10095 -11.76845 -11.50174 -11.31271 -11.25258 -11.01146 -10.80835 -10.67137 -10.48296 -10.36158 -10.16910 -10.13710 -10.03970 -9.60118 -9.55103 -9.05165 -9.00825 -8.44808 -6.10868 -4.16143 3.29004 3.31892 3.35187 3.37682 3.47693 3.98847 4.13134 4.41818 4.63769 4.98205 5.09999 5.19809 5.22715 5.26808 5.30373 5.41975 5.58150 5.78105 5.90542 5.97297 6.00461 6.14116 6.23878 6.33118 6.44653 6.47310 6.59554 6.65948 6.86386 6.88794 7.29200 7.43879 7.74440 7.94644 8.14502 8.87120 8.94929 9.49540 10.96504 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029967 B = 0.007173 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.137481 B = 3902.823769 C = 4203.597043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.061 0.939 4 C -0.512 4.512 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.464 3.536 13 O -0.514 6.514 14 O -0.354 6.354 15 C 0.142 3.858 16 C -0.152 4.152 17 C -0.163 4.163 18 C -0.181 4.181 19 C -0.171 4.171 20 C -0.171 4.171 21 C -0.186 4.186 22 H 0.031 0.969 23 H 0.095 0.905 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 -0.914 -13.001 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.079 0.921 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.731 3.269 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.401 6.401 14 O -0.272 6.272 15 C 0.087 3.913 16 C -0.170 4.170 17 C -0.200 4.200 18 C -0.218 4.218 19 C -0.189 4.189 20 C -0.208 4.208 21 C -0.223 4.223 22 H 0.050 0.950 23 H 0.114 0.886 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.132 0.868 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.237 -1.111 -12.849 12.899 hybrid contribution 0.376 -0.596 0.656 0.963 sum 0.140 -1.706 -12.193 12.312 Atomic orbital electron populations 1.21739 0.95649 1.00018 1.01658 1.18739 0.94802 0.96866 0.85745 0.92087 1.21130 1.31816 1.13221 0.88796 0.90665 1.24930 0.94897 0.95027 0.99115 1.69881 1.36491 1.22869 1.23828 0.86398 0.78500 0.80193 0.81835 1.20552 1.21130 1.19685 1.25313 0.76346 0.83213 0.84259 1.90460 1.36350 1.26657 1.86635 1.86677 1.70056 1.55349 1.15162 1.21381 0.96554 0.89830 0.83554 1.22322 1.05738 0.90952 0.98026 1.22914 0.96804 0.96302 1.03938 1.22987 0.92467 1.03198 1.03108 1.22631 0.98450 0.99869 0.97976 1.22972 0.91755 1.02374 1.03694 1.23281 1.03630 0.94134 1.01270 0.94950 0.88618 0.95830 0.92718 0.89669 0.86820 0.89230 0.87194 0.88760 0.88940 0.87303 0.87603 0.89304 0.89312 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.89 37.16 0.33 -2.78 16 2 C 0.06 1.44 2.74 -92.92 -0.25 1.19 16 3 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 4 C -0.51 -14.26 8.37 -34.44 -0.29 -14.55 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.76 11.32 55.43 0.63 -24.13 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.46 10.62 6.20 36.01 0.22 10.84 16 13 O -0.51 -12.70 12.51 -18.75 -0.23 -12.93 16 14 O -0.35 -6.85 6.65 -39.25 -0.26 -7.11 16 15 C 0.14 2.33 2.76 -26.73 -0.07 2.26 16 16 C -0.15 -2.02 5.73 -90.62 -0.52 -2.54 16 17 C -0.16 -2.13 9.87 -26.69 -0.26 -2.39 16 18 C -0.18 -2.30 10.24 -26.70 -0.27 -2.57 16 19 C -0.17 -2.56 5.70 -90.62 -0.52 -3.08 16 20 C -0.17 -2.66 9.80 -26.70 -0.26 -2.92 16 21 C -0.19 -3.06 9.85 -26.70 -0.26 -3.33 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 24 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.09 1.53 7.16 -51.93 -0.37 1.16 16 27 H 0.11 1.26 7.96 -51.93 -0.41 0.84 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.66 7.00 -51.93 -0.36 1.30 16 30 H 0.09 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.11 1.35 7.98 -51.93 -0.41 0.94 16 33 H 0.11 1.88 6.89 -51.93 -0.36 1.52 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.11 2.27 5.37 -51.93 -0.28 1.99 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -28.55 295.42 -8.08 -36.63 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.39 Total: 4.91 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -2.26 Total: -18.27 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.63 Total: -24.13 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.50 Total: -20.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.55 -8.08 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519345325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.580 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds