Wall clock time and date at job start Sun Mar 29 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46566 * 2 1 4 4 C 1.50705 * 109.47314 * 119.99287 * 2 1 3 5 5 H 1.07992 * 119.99814 * 120.00494 * 4 2 1 6 6 C 1.37880 * 119.99999 * 300.00639 * 4 2 1 7 7 N 1.31515 * 119.99778 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46912 * 89.99936 * 8 6 4 10 10 H 1.48497 * 109.46896 * 209.99870 * 8 6 4 11 11 H 1.48502 * 109.47129 * 329.99949 * 8 6 4 12 12 C 1.50701 * 109.47491 * 239.99850 * 2 1 3 13 13 O 1.20823 * 119.99606 * 239.99980 * 12 2 1 14 14 O 1.34228 * 119.99868 * 59.99623 * 12 2 1 15 15 C 1.45200 * 116.99960 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47367 * 210.00096 * 15 14 12 17 17 C 1.53002 * 117.49888 * 356.25163 * 16 15 14 18 18 C 1.53000 * 117.50107 * 64.90925 * 16 15 14 19 19 C 1.52997 * 109.47178 * 89.99615 * 15 14 12 20 20 C 1.52999 * 117.50135 * 8.74958 * 19 15 14 21 21 C 1.52999 * 117.50014 * 300.09035 * 19 15 14 22 22 H 1.09003 * 109.46566 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47688 * 300.00057 * 1 2 3 24 24 H 1.09001 * 109.47443 * 60.00572 * 1 2 3 25 25 H 0.97007 * 119.99572 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.46620 * 329.99955 * 15 14 12 27 27 H 1.09002 * 115.54951 * 210.58137 * 16 15 14 28 28 H 1.09000 * 117.49996 * 215.00804 * 17 16 15 29 29 H 1.08999 * 117.49664 * 0.02562 * 17 16 15 30 30 H 1.09008 * 117.49673 * 359.97438 * 18 16 15 31 31 H 1.08999 * 117.49942 * 144.97366 * 18 16 15 32 32 H 1.09007 * 115.54802 * 154.41877 * 19 15 14 33 33 H 1.09003 * 117.49627 * 359.97438 * 20 19 15 34 34 H 1.09000 * 117.50333 * 145.01510 * 20 19 15 35 35 H 1.09007 * 117.49663 * 214.97595 * 21 19 15 36 36 H 1.08999 * 117.49841 * 359.97283 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5883 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3213 -1.1199 4.0081 9 1 3.6296 -0.5453 4.4124 10 1 1.3431 -0.9488 5.1121 11 1 2.4860 -2.5658 3.7122 12 6 2.0324 -0.7104 -1.2304 13 8 2.7271 -1.6927 -1.1194 14 8 1.7081 -0.2519 -2.4496 15 6 2.2269 -0.9864 -3.5896 16 6 2.4320 -0.0273 -4.7638 17 6 1.9949 1.4265 -4.5732 18 6 3.4837 1.0721 -4.6026 19 6 1.2311 -2.0769 -3.9897 20 6 -0.1392 -2.0665 -3.3093 21 6 0.8891 -3.1397 -2.9435 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 0.7085 1.1615 3.4844 26 1 3.1797 -1.4443 -3.3237 27 1 2.3085 -0.4642 -5.7548 28 1 1.5837 1.9460 -5.4387 29 1 1.5616 1.6997 -3.6111 30 1 4.0292 1.1124 -3.6597 31 1 4.0524 1.3583 -5.4874 32 1 1.2729 -2.3922 -5.0323 33 1 -0.3312 -1.2829 -2.5763 34 1 -0.9989 -2.3751 -3.9041 35 1 0.7055 -4.1540 -3.2979 36 1 1.3739 -3.0622 -1.9703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519345325.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:45 Heat of formation + Delta-G solvation = -59.970259 kcal Electronic energy + Delta-G solvation = -17711.401196 eV Core-core repulsion = 14968.598160 eV Total energy + Delta-G solvation = -2742.803036 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77019 -38.98205 -37.24191 -36.47043 -35.93122 -32.68089 -29.27273 -27.30186 -25.14404 -23.42830 -23.14528 -22.21859 -21.94350 -20.68202 -18.56886 -18.06580 -17.92595 -17.41388 -16.41749 -16.07363 -15.62916 -15.23034 -14.78027 -14.51729 -13.80927 -13.65705 -13.31416 -13.05256 -12.92574 -12.79853 -12.62701 -12.41074 -12.31798 -12.26738 -12.06477 -11.60839 -11.54399 -11.28702 -11.14299 -11.04707 -10.81670 -10.66882 -10.51945 -8.22073 -6.35172 1.39521 1.40268 1.47695 1.51716 1.88759 2.41458 2.81991 2.95857 3.07979 3.47912 3.82375 3.96067 4.03921 4.09557 4.12188 4.17913 4.32153 4.59288 4.65470 4.73902 4.78657 4.82228 4.88476 4.93813 4.98036 5.05224 5.22121 5.23255 5.27931 5.37017 5.38878 5.56074 5.69629 5.87504 6.09264 6.71359 7.10585 7.33804 8.84430 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.029967 B = 0.007173 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.137481 B = 3902.823769 C = 4203.597043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.051 3.949 3 H 0.044 0.956 4 C -0.538 4.538 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.473 3.527 13 O -0.537 6.537 14 O -0.348 6.348 15 C 0.130 3.870 16 C -0.150 4.150 17 C -0.164 4.164 18 C -0.180 4.180 19 C -0.159 4.159 20 C -0.169 4.169 21 C -0.204 4.204 22 H 0.027 0.973 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.268 0.732 26 H 0.065 0.935 27 H 0.150 0.850 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -1.099 -14.947 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.032 3.968 3 H 0.062 0.938 4 C -0.575 4.575 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.426 6.426 14 O -0.265 6.265 15 C 0.075 3.925 16 C -0.167 4.167 17 C -0.201 4.201 18 C -0.217 4.217 19 C -0.176 4.176 20 C -0.205 4.205 21 C -0.240 4.240 22 H 0.046 0.954 23 H 0.095 0.905 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.168 0.832 28 H 0.137 0.863 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.167 0.833 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.660 -1.273 -14.809 14.878 hybrid contribution 0.518 -0.509 1.216 1.417 sum -0.142 -1.782 -13.592 13.709 Atomic orbital electron populations 1.21528 0.94384 0.99701 1.01786 1.18634 0.95856 0.95828 0.86506 0.93794 1.21240 1.32538 1.13213 0.90552 0.92704 1.25629 0.94883 0.95661 1.01538 1.69962 1.36599 1.23433 1.24729 0.85499 0.78435 0.78746 0.78667 1.19838 1.19729 1.20110 1.24703 0.75896 0.82523 0.85058 1.90447 1.37382 1.27555 1.87260 1.86633 1.69651 1.55417 1.14824 1.21777 0.96124 0.91255 0.83305 1.22425 1.06072 0.90435 0.97817 1.22936 0.97006 0.96358 1.03782 1.23051 0.92467 1.02927 1.03253 1.22789 0.97267 0.98188 0.99396 1.22989 0.93025 1.01057 1.03468 1.23216 1.04630 0.96085 1.00106 0.95360 0.90512 0.93465 0.92254 0.91744 0.83213 0.86275 0.89978 0.91293 0.85872 0.83341 0.90328 0.86120 0.86805 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.89 71.98 0.64 -4.92 16 2 C 0.05 2.65 2.74 -12.28 -0.03 2.62 16 3 H 0.04 2.42 8.14 -2.39 -0.02 2.40 16 4 C -0.54 -31.04 8.37 25.60 0.21 -30.82 16 5 H 0.05 3.33 6.76 -2.91 -0.02 3.31 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -51.03 11.32 21.45 0.24 -50.78 16 8 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 C 0.47 22.48 6.20 71.24 0.44 22.92 16 13 O -0.54 -27.77 12.51 21.97 0.27 -27.50 16 14 O -0.35 -13.67 6.65 -51.40 -0.34 -14.01 16 15 C 0.13 4.16 2.76 30.59 0.08 4.24 16 16 C -0.15 -3.56 5.73 -10.79 -0.06 -3.63 16 17 C -0.16 -3.93 9.87 30.62 0.30 -3.62 16 18 C -0.18 -4.23 10.24 30.62 0.31 -3.92 16 19 C -0.16 -4.38 5.70 -10.80 -0.06 -4.44 16 20 C -0.17 -4.94 9.80 30.62 0.30 -4.64 16 21 C -0.20 -6.53 9.85 30.62 0.30 -6.23 16 22 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.08 3.97 6.07 -2.39 -0.01 3.96 16 24 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 25 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 26 H 0.06 2.35 7.16 -2.39 -0.02 2.33 16 27 H 0.15 2.56 7.96 -2.39 -0.02 2.54 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 2.44 7.00 -2.39 -0.02 2.43 16 30 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.15 2.97 7.98 -2.38 -0.02 2.95 16 33 H 0.08 2.75 6.89 -2.39 -0.02 2.74 16 34 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 36 H 0.07 2.92 5.37 -2.39 -0.01 2.91 16 Total: -1.00 -63.52 295.42 6.15 -57.37 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.06 Total: 19.18 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 2.89 Total: -30.73 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.24 Total: -50.78 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.07 Total: -41.51 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.52 6.15 -57.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519345325.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.603 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds