Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48488 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46851 * 300.00293 * 3 2 1 6 6 H 1.48501 * 109.46934 * 59.99919 * 3 2 1 7 7 C 1.37877 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47138 * 299.99681 * 9 7 2 11 11 O 1.45198 * 109.47183 * 179.97438 * 9 7 2 12 12 C 1.34230 * 117.00173 * 149.99961 * 11 9 7 13 13 O 1.20818 * 119.99983 * 0.27497 * 12 11 9 14 14 C 1.50706 * 119.99763 * 179.97438 * 12 11 9 15 15 C 1.54261 * 110.03173 * 297.90675 * 14 12 11 16 16 C 1.54975 * 104.15832 * 217.13899 * 15 14 12 17 17 C 1.54887 * 102.77628 * 37.88686 * 16 15 14 18 18 C 1.53877 * 110.02859 * 180.68852 * 14 12 11 19 19 C 1.53003 * 109.47449 * 59.99729 * 9 7 2 20 20 C 1.52997 * 117.50026 * 248.74706 * 19 9 7 21 21 C 1.52998 * 117.50048 * 180.08529 * 19 9 7 22 22 H 0.96998 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.01319 * 59.29959 * 14 12 11 24 24 H 1.08996 * 110.48844 * 335.78041 * 15 14 12 25 25 H 1.09001 * 110.48660 * 98.42925 * 15 14 12 26 26 H 1.09005 * 110.71735 * 279.57737 * 16 15 14 27 27 H 1.08998 * 110.92349 * 156.29807 * 16 15 14 28 28 H 1.09000 * 110.48699 * 203.40648 * 17 16 15 29 29 H 1.09006 * 110.59455 * 80.81712 * 17 16 15 30 30 H 1.08998 * 110.03190 * 238.57206 * 18 14 12 31 31 H 1.08998 * 110.03276 * 0.02562 * 18 14 12 32 32 H 1.08997 * 115.54856 * 34.41322 * 19 9 7 33 33 H 1.09002 * 117.49870 * 359.97438 * 20 19 9 34 34 H 1.09000 * 117.50035 * 145.01436 * 20 19 9 35 35 H 1.08995 * 117.49782 * 214.97890 * 21 19 9 36 36 H 1.09000 * 117.49773 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 2.1947 -3.6027 0.0005 12 6 1.8035 -4.7390 0.5985 13 8 0.7070 -4.8107 1.1008 14 6 2.7294 -5.9274 0.6374 15 6 3.0357 -6.4058 -0.7968 16 6 3.0919 -7.9499 -0.6775 17 6 1.9621 -8.2564 0.3366 18 6 2.0474 -7.1035 1.3581 19 6 0.3719 -2.5805 -1.2490 20 6 -1.1438 -2.5129 -1.0519 21 6 -0.4795 -3.8383 -1.4330 22 1 -0.4850 0.8400 -0.0004 23 1 3.6551 -5.6625 1.1484 24 1 2.2395 -6.1047 -1.4776 25 1 3.9953 -6.0131 -1.1332 26 1 4.0580 -8.2717 -0.2884 27 1 2.8873 -8.4222 -1.6383 28 1 2.1387 -9.2140 0.8265 29 1 0.9913 -8.2558 -0.1591 30 1 2.6425 -7.4100 2.2183 31 1 1.0466 -6.8149 1.6792 32 1 0.7841 -2.1162 -2.1449 33 1 -1.5147 -2.4109 -0.0320 34 1 -1.7288 -2.0045 -1.8183 35 1 -0.6277 -4.2013 -2.4500 36 1 -0.4136 -4.6076 -0.6637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520417691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = -82.642205 kcal Electronic energy + Delta-G solvation = -17623.035179 eV Core-core repulsion = 14879.249014 eV Total energy + Delta-G solvation = -2743.786166 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92997 -37.55114 -36.04418 -34.82911 -32.63029 -29.48897 -28.56559 -27.61513 -23.46754 -21.98268 -21.21402 -20.64332 -19.51796 -18.86029 -17.27453 -16.55563 -15.81083 -15.51953 -14.99439 -14.61965 -13.87841 -13.85647 -13.23648 -13.04066 -12.46237 -11.77466 -11.49025 -11.31639 -11.18366 -11.04546 -11.02568 -11.01732 -10.86999 -10.64815 -10.45589 -10.37051 -10.22271 -9.79666 -9.52238 -9.29684 -8.99301 -8.61851 -8.41215 -6.13678 -4.21371 3.05388 3.24781 3.31959 3.36237 3.70270 4.35900 4.60314 4.71942 4.95173 5.10057 5.19405 5.48922 5.51153 5.55885 5.68653 5.71023 5.83375 5.93852 5.97350 6.02243 6.14235 6.20048 6.29256 6.37210 6.40997 6.49865 6.58292 6.73367 7.02727 7.18947 7.30986 7.44331 7.66196 7.88828 8.15562 8.69109 8.93954 9.43394 10.93159 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.006830 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.235126 B = 4098.771927 C = 4468.669188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.247 3.753 10 H 0.047 0.953 11 O -0.350 6.350 12 C 0.459 3.541 13 O -0.520 6.520 14 C -0.090 4.090 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.229 4.229 22 H 0.263 0.737 23 H 0.101 0.899 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 -12.113 -1.118 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.195 3.805 10 H 0.065 0.935 11 O -0.266 6.266 12 C 0.302 3.698 13 O -0.411 6.411 14 C -0.109 4.109 15 C -0.147 4.147 16 C -0.162 4.162 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.132 4.132 20 C -0.161 4.161 21 C -0.266 4.266 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.662 -11.939 -0.984 12.527 hybrid contribution 0.206 1.118 -0.049 1.138 sum 3.868 -10.821 -1.033 11.538 Atomic orbital electron populations 1.70058 1.05754 1.26842 1.48294 1.24886 0.95020 0.99077 0.94607 0.86317 0.80033 0.82697 0.77663 1.19538 1.20813 1.20835 1.20960 0.93837 0.88460 1.53201 0.91296 1.20194 0.86189 0.80632 0.93514 0.93533 1.86488 1.49093 1.22054 1.68963 1.23290 0.86650 0.85010 0.74862 1.90526 1.22825 1.83242 1.44493 1.21634 0.98480 0.91861 0.98930 1.22294 1.02717 0.95137 0.94601 1.22535 0.98826 0.95566 0.99271 1.22359 0.99058 0.97879 0.96810 1.22225 1.02850 0.93191 0.97743 1.22579 0.92870 0.97326 1.00447 1.22360 0.95633 0.96780 1.01359 1.23283 1.09506 0.93052 1.00785 0.92713 0.88046 0.90864 0.90514 0.91406 0.91448 0.91715 0.91521 0.91414 0.89116 0.89430 0.89382 0.90832 0.91128 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.43 11.43 55.43 0.63 -23.80 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.75 8.88 -34.44 -0.31 -15.06 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.25 6.58 2.25 -27.88 -0.06 6.51 16 10 H 0.05 1.38 6.92 -51.93 -0.36 1.02 16 11 O -0.35 -8.33 9.82 -39.26 -0.39 -8.72 16 12 C 0.46 9.53 6.33 36.01 0.23 9.75 16 13 O -0.52 -11.99 12.24 -18.74 -0.23 -12.22 16 14 C -0.09 -1.37 3.41 -90.65 -0.31 -1.68 16 15 C -0.11 -1.47 6.34 -25.03 -0.16 -1.62 16 16 C -0.12 -1.32 6.91 -24.69 -0.17 -1.49 16 17 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 18 C -0.12 -1.65 6.40 -25.61 -0.16 -1.81 16 19 C -0.11 -2.81 4.47 -90.62 -0.41 -3.22 16 20 C -0.12 -2.91 9.04 -26.69 -0.24 -3.15 16 21 C -0.23 -5.01 9.80 -26.69 -0.26 -5.28 16 22 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.43 6.40 -51.93 -0.33 1.10 16 32 H 0.09 2.24 8.11 -51.93 -0.42 1.81 16 33 H 0.09 2.21 8.05 -51.93 -0.42 1.79 16 34 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.09 2.13 5.36 -51.93 -0.28 1.85 16 LS Contribution 292.39 15.07 4.41 4.41 Total: -1.00 -29.47 292.39 -8.28 -37.75 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.57 Total: 3.38 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: -2.12 Total: -16.82 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.63 Total: -23.80 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.61 Total: -20.94 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.47 -8.28 -37.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520417691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.896 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds