Wall clock time and date at job start Sun Mar 29 2020 22:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99919 * 2 1 4 4 H 1.48488 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46851 * 300.00293 * 3 2 1 6 6 H 1.48501 * 109.46934 * 59.99919 * 3 2 1 7 7 C 1.37877 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00077 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47138 * 299.99681 * 9 7 2 11 11 O 1.45198 * 109.47183 * 179.97438 * 9 7 2 12 12 C 1.34230 * 117.00173 * 149.99961 * 11 9 7 13 13 O 1.20818 * 119.99983 * 0.27497 * 12 11 9 14 14 C 1.50706 * 119.99763 * 179.97438 * 12 11 9 15 15 C 1.54261 * 110.03173 * 297.90675 * 14 12 11 16 16 C 1.54975 * 104.15832 * 217.13899 * 15 14 12 17 17 C 1.54887 * 102.77628 * 37.88686 * 16 15 14 18 18 C 1.53877 * 110.02859 * 180.68852 * 14 12 11 19 19 C 1.53003 * 109.47449 * 59.99729 * 9 7 2 20 20 C 1.52997 * 117.50026 * 248.74706 * 19 9 7 21 21 C 1.52998 * 117.50048 * 180.08529 * 19 9 7 22 22 H 0.96998 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.01319 * 59.29959 * 14 12 11 24 24 H 1.08996 * 110.48844 * 335.78041 * 15 14 12 25 25 H 1.09001 * 110.48660 * 98.42925 * 15 14 12 26 26 H 1.09005 * 110.71735 * 279.57737 * 16 15 14 27 27 H 1.08998 * 110.92349 * 156.29807 * 16 15 14 28 28 H 1.09000 * 110.48699 * 203.40648 * 17 16 15 29 29 H 1.09006 * 110.59455 * 80.81712 * 17 16 15 30 30 H 1.08998 * 110.03190 * 238.57206 * 18 14 12 31 31 H 1.08998 * 110.03276 * 0.02562 * 18 14 12 32 32 H 1.08997 * 115.54856 * 34.41322 * 19 9 7 33 33 H 1.09002 * 117.49870 * 359.97438 * 20 19 9 34 34 H 1.09000 * 117.50035 * 145.01436 * 20 19 9 35 35 H 1.08995 * 117.49782 * 214.97890 * 21 19 9 36 36 H 1.09000 * 117.49773 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 2.1947 -3.6027 0.0005 12 6 1.8035 -4.7390 0.5985 13 8 0.7070 -4.8107 1.1008 14 6 2.7294 -5.9274 0.6374 15 6 3.0357 -6.4058 -0.7968 16 6 3.0919 -7.9499 -0.6775 17 6 1.9621 -8.2564 0.3366 18 6 2.0474 -7.1035 1.3581 19 6 0.3719 -2.5805 -1.2490 20 6 -1.1438 -2.5129 -1.0519 21 6 -0.4795 -3.8383 -1.4330 22 1 -0.4850 0.8400 -0.0004 23 1 3.6551 -5.6625 1.1484 24 1 2.2395 -6.1047 -1.4776 25 1 3.9953 -6.0131 -1.1332 26 1 4.0580 -8.2717 -0.2884 27 1 2.8873 -8.4222 -1.6383 28 1 2.1387 -9.2140 0.8265 29 1 0.9913 -8.2558 -0.1591 30 1 2.6425 -7.4100 2.2183 31 1 1.0466 -6.8149 1.6792 32 1 0.7841 -2.1162 -2.1449 33 1 -1.5147 -2.4109 -0.0320 34 1 -1.7288 -2.0045 -1.8183 35 1 -0.6277 -4.2013 -2.4500 36 1 -0.4136 -4.6076 -0.6637 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520417691.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:10 Heat of formation + Delta-G solvation = -97.739545 kcal Electronic energy + Delta-G solvation = -17623.689849 eV Core-core repulsion = 14879.249014 eV Total energy + Delta-G solvation = -2744.440835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.59827 -38.96288 -37.69840 -36.68272 -34.72698 -30.81554 -29.62763 -29.44130 -25.44512 -23.54421 -23.07911 -21.63455 -21.28978 -20.42124 -18.95909 -18.45755 -17.53129 -17.05532 -16.54127 -16.24324 -15.72080 -15.15575 -14.80167 -14.32582 -14.20757 -13.57176 -13.25127 -13.05942 -12.84709 -12.61788 -12.32787 -12.28821 -12.20368 -12.02701 -11.91704 -11.77503 -11.65400 -11.43470 -11.35244 -11.07680 -10.93252 -10.61311 -10.45135 -8.23154 -6.40368 1.38845 1.41391 1.41871 1.54865 2.04602 2.42983 3.04119 3.20399 3.54637 3.68855 3.88867 4.08206 4.25029 4.29011 4.41860 4.46437 4.53426 4.53980 4.63782 4.75550 4.77873 4.82530 5.02052 5.08667 5.10687 5.23990 5.24598 5.25603 5.36758 5.40174 5.47305 5.49585 5.56881 5.85930 6.16852 6.63870 7.04061 7.30363 8.83477 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.006830 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.235126 B = 4098.771927 C = 4468.669188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.024 3.976 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.063 0.937 9 C 0.253 3.747 10 H 0.004 0.996 11 O -0.361 6.361 12 C 0.450 3.550 13 O -0.549 6.549 14 C -0.087 4.087 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.199 4.199 22 H 0.267 0.733 23 H 0.120 0.880 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -13.211 -1.866 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.081 0.919 9 C 0.200 3.800 10 H 0.021 0.979 11 O -0.277 6.277 12 C 0.295 3.705 13 O -0.441 6.441 14 C -0.106 4.106 15 C -0.149 4.149 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.235 4.235 22 H 0.076 0.924 23 H 0.138 0.862 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.999 -13.064 -1.733 14.094 hybrid contribution -0.239 1.420 0.242 1.460 sum 4.760 -11.643 -1.491 12.667 Atomic orbital electron populations 1.70170 1.07060 1.27912 1.48067 1.25742 0.95958 1.02377 0.93696 0.85251 0.78801 0.78052 0.77976 1.19014 1.19817 1.20267 1.21223 0.93771 0.89794 1.54580 0.91878 1.19823 0.86229 0.81496 0.92492 0.97853 1.86482 1.48669 1.22656 1.69874 1.24497 0.87315 0.85199 0.73447 1.90510 1.24496 1.83581 1.45473 1.21906 0.97870 0.89732 1.01084 1.22350 1.02414 0.97617 0.92520 1.22523 0.99627 0.92900 0.99966 1.22371 0.98966 0.98048 0.96427 1.22264 1.01318 0.93236 0.99147 1.22387 0.93256 0.99887 0.99359 1.22282 0.94917 0.98340 1.00548 1.23255 1.06439 0.91681 1.02168 0.92379 0.86165 0.92992 0.89425 0.89104 0.89954 0.89064 0.92651 0.88999 0.92100 0.90249 0.91827 0.89198 0.87851 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.05 11.43 21.45 0.25 -50.80 16 2 C 0.02 1.34 5.30 84.65 0.45 1.79 16 3 Si 0.98 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.56 -32.04 8.88 25.60 0.23 -31.82 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.25 14.01 2.25 29.85 0.07 14.08 16 10 H 0.00 0.23 6.92 -2.39 -0.02 0.22 16 11 O -0.36 -17.72 9.82 -51.41 -0.50 -18.23 16 12 C 0.45 19.17 6.33 71.24 0.45 19.62 16 13 O -0.55 -26.40 12.24 21.99 0.27 -26.13 16 14 C -0.09 -2.57 3.41 -10.81 -0.04 -2.61 16 15 C -0.11 -2.77 6.34 31.70 0.20 -2.57 16 16 C -0.11 -1.99 6.91 31.91 0.22 -1.77 16 17 C -0.12 -2.38 6.83 31.67 0.22 -2.17 16 18 C -0.12 -3.10 6.40 31.32 0.20 -2.90 16 19 C -0.13 -6.60 4.47 -10.79 -0.05 -6.65 16 20 C -0.12 -5.90 9.04 30.62 0.28 -5.62 16 21 C -0.20 -8.68 9.80 30.62 0.30 -8.38 16 22 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 23 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 24 H 0.05 1.51 7.85 -2.39 -0.02 1.49 16 25 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.93 6.40 -2.39 -0.02 1.92 16 32 H 0.08 4.13 8.11 -2.39 -0.02 4.11 16 33 H 0.06 3.33 8.05 -2.39 -0.02 3.31 16 34 H 0.09 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 36 H 0.08 3.89 5.36 -2.39 -0.01 3.87 16 Total: -1.00 -65.84 292.39 5.61 -60.23 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.05 Total: 18.59 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 2.52 Total: -29.00 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.25 Total: -50.80 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.24 Total: -44.36 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -65.84 5.61 -60.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520417691.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.506 kcal (2) G-P(sol) polarization free energy of solvation -65.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds