Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.45200 * 109.46946 * 180.02562 * 9 7 2 12 12 C 1.34237 * 116.99983 * 209.99989 * 11 9 7 13 13 O 1.20826 * 120.00047 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99854 * 179.97438 * 12 11 9 15 15 C 1.53001 * 109.47051 * 180.02562 * 14 12 11 16 16 C 1.53777 * 113.61524 * 274.13797 * 15 14 12 17 17 C 1.53953 * 87.02268 * 220.04771 * 16 15 14 18 18 C 1.53775 * 87.11066 * 25.35933 * 17 16 15 19 19 C 1.53008 * 109.47347 * 299.99866 * 9 7 2 20 20 C 1.52999 * 117.49893 * 248.75206 * 19 9 7 21 21 C 1.52998 * 117.49827 * 180.09059 * 19 9 7 22 22 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47338 * 299.99413 * 14 12 11 24 24 H 1.08994 * 109.47348 * 60.00218 * 14 12 11 25 25 H 1.09002 * 112.85053 * 45.32763 * 15 14 12 26 26 H 1.09006 * 113.61454 * 334.56618 * 16 15 14 27 27 H 1.08999 * 113.61491 * 105.46656 * 16 15 14 28 28 H 1.09002 * 113.53190 * 270.81163 * 17 16 15 29 29 H 1.08997 * 113.74439 * 139.94262 * 17 16 15 30 30 H 1.08998 * 113.61811 * 220.09101 * 18 17 16 31 31 H 1.08997 * 113.68883 * 89.20010 * 18 17 16 32 32 H 1.08996 * 115.54647 * 34.41664 * 19 9 7 33 33 H 1.09005 * 117.49957 * 359.97438 * 20 19 9 34 34 H 1.09000 * 117.50113 * 145.01940 * 20 19 9 35 35 H 1.08999 * 117.49595 * 214.98168 * 21 19 9 36 36 H 1.09000 * 117.49853 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 2.1943 -3.6028 0.0130 12 6 1.8057 -4.7407 -0.5838 13 8 0.7135 -4.8119 -1.0957 14 6 2.7320 -5.9289 -0.6163 15 6 2.0516 -7.0861 -1.3505 16 6 1.1558 -7.9481 -0.4453 17 6 1.7019 -9.1706 -1.2051 18 6 2.9484 -8.3246 -1.5135 19 6 0.3660 -2.5771 1.2516 20 6 0.7431 -3.6023 2.3229 21 6 -0.4833 -3.8362 1.4371 22 1 -0.4851 -0.8400 -0.0004 23 1 3.6508 -5.6591 -1.1370 24 1 2.9680 -6.2336 0.4032 25 1 1.5661 -6.7737 -2.2751 26 1 1.4438 -7.9227 0.6057 27 1 0.0898 -7.7788 -0.5973 28 1 1.1197 -9.4290 -2.0897 29 1 1.9046 -10.0300 -0.5659 30 1 3.3275 -8.4588 -2.5266 31 1 3.7283 -8.4016 -0.7560 32 1 -0.0571 -1.6305 1.5876 33 1 1.6213 -4.2216 2.1400 34 1 0.5676 -3.3304 3.3637 35 1 -1.4651 -3.7179 1.8956 36 1 -0.4120 -4.6087 0.6715 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526992564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -56.297633 kcal Electronic energy + Delta-G solvation = -17442.830953 eV Core-core repulsion = 14700.187174 eV Total energy + Delta-G solvation = -2742.643779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07618 -38.61247 -36.59292 -34.82142 -33.01881 -30.63175 -27.35141 -25.62923 -24.04040 -23.27675 -21.61956 -20.54481 -19.36673 -19.05109 -17.51869 -16.82743 -16.04127 -15.82414 -14.83196 -14.53700 -14.23660 -13.79732 -13.47299 -12.71402 -12.59108 -12.48377 -12.17219 -11.76943 -11.54512 -11.45924 -10.98560 -10.77201 -10.68979 -10.65971 -10.35330 -10.20937 -10.18427 -9.77820 -9.72891 -9.67174 -9.15355 -8.46420 -8.40127 -6.50358 -4.26062 2.92498 3.38387 3.42471 3.54111 3.60974 4.43065 4.59430 4.61590 4.69331 4.75045 4.85506 5.20826 5.28694 5.43681 5.59514 5.64905 5.67333 5.69355 5.77900 5.82449 5.88362 5.91557 5.94500 6.07289 6.24019 6.30645 6.48569 6.51897 6.67335 6.85336 6.96566 7.20225 7.49956 7.93494 8.26372 8.61110 8.75053 9.44193 10.86352 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039486 B = 0.006085 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.945690 B = 4600.055041 C = 4964.409525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 1.083 2.917 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.598 4.598 8 H 0.064 0.936 9 C 0.239 3.761 10 H 0.041 0.959 11 O -0.347 6.347 12 C 0.449 3.551 13 O -0.517 6.517 14 C -0.108 4.108 15 C -0.098 4.098 16 C -0.135 4.135 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.146 4.146 20 C -0.181 4.181 21 C -0.207 4.207 22 H 0.277 0.723 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -13.694 0.125 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.911 3.089 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.636 4.636 8 H 0.083 0.917 9 C 0.186 3.814 10 H 0.059 0.941 11 O -0.263 6.263 12 C 0.293 3.707 13 O -0.407 6.407 14 C -0.146 4.146 15 C -0.116 4.116 16 C -0.173 4.173 17 C -0.179 4.179 18 C -0.174 4.174 19 C -0.165 4.165 20 C -0.218 4.218 21 C -0.244 4.244 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.190 -12.019 -0.012 12.728 hybrid contribution -0.022 -1.613 0.114 1.617 sum 4.168 -13.632 0.102 14.255 Atomic orbital electron populations 1.70730 1.06809 1.31552 1.45343 1.25892 0.96384 1.02423 0.93230 0.83343 0.74411 0.74045 0.77143 1.21248 1.21107 1.21079 1.21868 0.95318 0.89533 1.56834 0.91725 1.20170 0.86537 0.81862 0.92879 0.94142 1.86520 1.48753 1.21933 1.69132 1.23511 0.86857 0.85125 0.75235 1.90561 1.22943 1.83560 1.43651 1.21395 0.98519 0.91412 1.03240 1.22401 0.97108 0.92140 1.00000 1.22984 1.00250 0.95456 0.98590 1.22815 0.97642 0.96913 1.00540 1.22964 0.96788 0.95764 1.01853 1.23249 1.00451 0.93844 0.98966 1.22737 0.98580 1.04886 0.95626 1.23202 0.94676 1.02913 1.03626 0.91083 0.88193 0.88413 0.88209 0.90286 0.91164 0.90315 0.91611 0.91436 0.90003 0.86066 0.89554 0.90102 0.90237 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.87 12.84 55.43 0.71 -26.16 16 2 C 0.03 0.71 5.20 -17.82 -0.09 0.62 16 3 Si 1.08 24.80 29.90 -169.99 -5.08 19.72 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.60 -17.00 8.90 -34.44 -0.31 -17.31 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.24 6.34 2.12 -27.88 -0.06 6.28 16 10 H 0.04 1.19 7.03 -51.93 -0.36 0.83 16 11 O -0.35 -8.18 8.38 -39.28 -0.33 -8.51 16 12 C 0.45 9.08 6.90 36.00 0.25 9.33 16 13 O -0.52 -11.62 12.84 -18.75 -0.24 -11.86 16 14 C -0.11 -1.55 5.63 -27.88 -0.16 -1.71 16 15 C -0.10 -1.26 3.11 -89.81 -0.28 -1.54 16 16 C -0.14 -1.64 7.65 -25.83 -0.20 -1.83 16 17 C -0.14 -1.39 8.09 -25.83 -0.21 -1.59 16 18 C -0.14 -1.34 7.65 -25.92 -0.20 -1.54 16 19 C -0.15 -3.59 4.66 -90.62 -0.42 -4.01 16 20 C -0.18 -3.78 9.80 -26.69 -0.26 -4.04 16 21 C -0.21 -4.43 9.85 -26.69 -0.26 -4.69 16 22 H 0.28 8.22 5.71 -40.82 -0.23 7.99 16 23 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.10 1.24 7.88 -51.93 -0.41 0.83 16 25 H 0.10 1.44 7.73 -51.93 -0.40 1.04 16 26 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.12 3.23 6.15 -51.93 -0.32 2.91 16 33 H 0.09 1.75 6.91 -51.93 -0.36 1.40 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.10 2.15 5.37 -51.93 -0.28 1.87 16 LS Contribution 292.43 15.07 4.41 4.41 Total: -1.00 -30.78 292.43 -8.09 -38.87 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.36 Total: 5.57 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.20 Total: -22.04 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.71 Total: -26.16 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.57 Total: -20.36 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.78 -8.09 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.427 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds