Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 11 11 O 1.45200 * 109.46946 * 180.02562 * 9 7 2 12 12 C 1.34237 * 116.99983 * 209.99989 * 11 9 7 13 13 O 1.20826 * 120.00047 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99854 * 179.97438 * 12 11 9 15 15 C 1.53001 * 109.47051 * 180.02562 * 14 12 11 16 16 C 1.53777 * 113.61524 * 274.13797 * 15 14 12 17 17 C 1.53953 * 87.02268 * 220.04771 * 16 15 14 18 18 C 1.53775 * 87.11066 * 25.35933 * 17 16 15 19 19 C 1.53008 * 109.47347 * 299.99866 * 9 7 2 20 20 C 1.52999 * 117.49893 * 248.75206 * 19 9 7 21 21 C 1.52998 * 117.49827 * 180.09059 * 19 9 7 22 22 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47338 * 299.99413 * 14 12 11 24 24 H 1.08994 * 109.47348 * 60.00218 * 14 12 11 25 25 H 1.09002 * 112.85053 * 45.32763 * 15 14 12 26 26 H 1.09006 * 113.61454 * 334.56618 * 16 15 14 27 27 H 1.08999 * 113.61491 * 105.46656 * 16 15 14 28 28 H 1.09002 * 113.53190 * 270.81163 * 17 16 15 29 29 H 1.08997 * 113.74439 * 139.94262 * 17 16 15 30 30 H 1.08998 * 113.61811 * 220.09101 * 18 17 16 31 31 H 1.08997 * 113.68883 * 89.20010 * 18 17 16 32 32 H 1.08996 * 115.54647 * 34.41664 * 19 9 7 33 33 H 1.09005 * 117.49957 * 359.97438 * 20 19 9 34 34 H 1.09000 * 117.50113 * 145.01940 * 20 19 9 35 35 H 1.08999 * 117.49595 * 214.98168 * 21 19 9 36 36 H 1.09000 * 117.49853 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6280 -2.5591 -0.8867 11 8 2.1943 -3.6028 0.0130 12 6 1.8057 -4.7407 -0.5838 13 8 0.7135 -4.8119 -1.0957 14 6 2.7320 -5.9289 -0.6163 15 6 2.0516 -7.0861 -1.3505 16 6 1.1558 -7.9481 -0.4453 17 6 1.7019 -9.1706 -1.2051 18 6 2.9484 -8.3246 -1.5135 19 6 0.3660 -2.5771 1.2516 20 6 0.7431 -3.6023 2.3229 21 6 -0.4833 -3.8362 1.4371 22 1 -0.4851 -0.8400 -0.0004 23 1 3.6508 -5.6591 -1.1370 24 1 2.9680 -6.2336 0.4032 25 1 1.5661 -6.7737 -2.2751 26 1 1.4438 -7.9227 0.6057 27 1 0.0898 -7.7788 -0.5973 28 1 1.1197 -9.4290 -2.0897 29 1 1.9046 -10.0300 -0.5659 30 1 3.3275 -8.4588 -2.5266 31 1 3.7283 -8.4016 -0.7560 32 1 -0.0571 -1.6305 1.5876 33 1 1.6213 -4.2216 2.1400 34 1 0.5676 -3.3304 3.3637 35 1 -1.4651 -3.7179 1.8956 36 1 -0.4120 -4.6087 0.6715 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526992564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -72.508910 kcal Electronic energy + Delta-G solvation = -17443.533927 eV Core-core repulsion = 14700.187174 eV Total energy + Delta-G solvation = -2743.346753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71673 -39.73712 -38.31941 -36.62511 -35.12784 -31.86800 -29.34482 -26.48667 -25.72617 -24.83248 -23.34156 -22.10989 -20.90300 -20.29993 -19.57796 -18.48067 -17.77331 -17.15687 -16.27356 -15.80100 -15.65919 -15.53668 -15.02399 -14.64948 -14.15134 -13.86388 -13.39555 -13.30250 -13.05361 -12.79535 -12.61686 -12.50683 -12.34100 -11.92019 -11.71594 -11.62396 -11.52990 -11.43858 -11.18640 -11.11035 -11.00549 -10.55082 -10.42117 -8.76203 -6.53475 1.30490 1.52737 1.62040 1.79614 1.98393 2.53379 2.90261 3.07305 3.59802 3.68886 3.77550 3.87518 3.95814 4.00623 4.04292 4.09139 4.38666 4.44982 4.60216 4.62593 4.71263 4.79956 4.86513 4.89034 4.96743 5.01022 5.10260 5.14588 5.16349 5.22387 5.35199 5.57464 5.61910 5.88155 6.10986 6.37497 6.93599 7.27334 8.60642 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039486 B = 0.006085 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.945690 B = 4600.055041 C = 4964.409525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.019 4.019 3 Si 1.130 2.870 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.618 4.618 8 H 0.059 0.941 9 C 0.243 3.757 10 H -0.004 1.004 11 O -0.357 6.357 12 C 0.441 3.559 13 O -0.545 6.545 14 C -0.097 4.097 15 C -0.109 4.109 16 C -0.143 4.143 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.178 4.178 20 C -0.154 4.154 21 C -0.193 4.193 22 H 0.265 0.735 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.431 -15.047 1.107 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.218 4.218 3 Si 0.950 3.050 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.655 4.655 8 H 0.077 0.923 9 C 0.189 3.811 10 H 0.014 0.986 11 O -0.273 6.273 12 C 0.286 3.714 13 O -0.436 6.436 14 C -0.134 4.134 15 C -0.127 4.127 16 C -0.181 4.181 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.197 4.197 20 C -0.191 4.191 21 C -0.230 4.230 22 H 0.075 0.925 23 H 0.138 0.862 24 H 0.142 0.858 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.902 -13.413 0.967 14.686 hybrid contribution -0.593 -1.270 -0.241 1.422 sum 5.310 -14.683 0.726 15.630 Atomic orbital electron populations 1.70836 1.07771 1.30861 1.46955 1.27436 0.96403 1.06058 0.91887 0.82782 0.74155 0.70257 0.77806 1.19362 1.20274 1.19847 1.22180 0.95218 0.91022 1.57081 0.92292 1.19750 0.86544 0.82640 0.92118 0.98590 1.86506 1.48205 1.22492 1.70102 1.24781 0.87513 0.85259 0.73817 1.90549 1.24652 1.83833 1.44610 1.21613 0.97717 0.88784 1.05331 1.22456 0.98485 0.92718 0.99049 1.23059 0.98851 0.96870 0.99273 1.22787 0.97193 0.96614 1.00433 1.22939 0.96754 0.92887 1.03185 1.22912 1.02664 0.94180 0.99966 1.22852 0.98276 1.01975 0.95965 1.23183 0.95933 1.00375 1.03483 0.92453 0.86171 0.85793 0.90638 0.89384 0.93440 0.90277 0.89688 0.90407 0.88061 0.88627 0.88792 0.87506 0.88312 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 12.84 21.45 0.28 -56.28 16 2 C -0.02 -1.09 5.20 84.66 0.44 -0.65 16 3 Si 1.13 49.78 29.90 68.60 2.05 51.83 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.62 -36.05 8.90 25.60 0.23 -35.82 16 8 H 0.06 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.24 13.41 2.12 29.85 0.06 13.47 16 10 H 0.00 -0.22 7.03 -2.39 -0.02 -0.23 16 11 O -0.36 -17.00 8.38 -51.48 -0.43 -17.43 16 12 C 0.44 17.92 6.90 71.23 0.49 18.41 16 13 O -0.55 -25.36 12.84 21.96 0.28 -25.08 16 14 C -0.10 -2.61 5.63 29.85 0.17 -2.44 16 15 C -0.11 -2.64 3.11 -10.27 -0.03 -2.67 16 16 C -0.14 -3.25 7.65 31.18 0.24 -3.02 16 17 C -0.13 -2.24 8.09 31.18 0.25 -1.99 16 18 C -0.12 -1.98 7.65 31.12 0.24 -1.74 16 19 C -0.18 -8.94 4.66 -10.79 -0.05 -8.99 16 20 C -0.15 -6.19 9.80 30.62 0.30 -5.89 16 21 C -0.19 -8.20 9.85 30.62 0.30 -7.90 16 22 H 0.26 16.48 5.71 -92.71 -0.53 15.95 16 23 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.12 2.72 7.88 -2.39 -0.02 2.70 16 25 H 0.08 2.20 7.73 -2.39 -0.02 2.18 16 26 H 0.09 1.83 7.92 -2.38 -0.02 1.81 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.32 8.10 -2.39 -0.02 1.30 16 32 H 0.10 5.28 6.15 -2.39 -0.01 5.27 16 33 H 0.09 3.63 6.91 -2.38 -0.02 3.62 16 34 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.09 3.97 5.37 -2.39 -0.01 3.96 16 Total: -1.00 -69.41 292.43 6.11 -63.30 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 1.30 Total: 22.88 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 2.64 Total: -39.22 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.28 Total: -56.28 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.15 Total: -42.51 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -69.41 6.11 -63.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526992564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.213 kcal (2) G-P(sol) polarization free energy of solvation -69.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds