Wall clock time and date at job start Sun Mar 29 2020 23:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00482 * 2 1 4 4 H 1.48503 * 109.46719 * 274.98263 * 3 2 1 5 5 H 1.48497 * 109.47174 * 34.97992 * 3 2 1 6 6 H 1.48496 * 109.47243 * 154.98132 * 3 2 1 7 7 C 1.40048 * 119.99638 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00602 * 186.01915 * 7 2 1 9 9 C 1.46377 * 120.00059 * 6.02291 * 7 2 1 10 10 O 1.21686 * 119.99994 * 353.55219 * 9 7 2 11 11 N 1.34781 * 120.00193 * 173.54449 * 9 7 2 12 12 C 1.48114 * 127.84043 * 0.02562 * 11 9 7 13 13 C 1.54329 * 104.69333 * 219.73905 * 12 11 9 14 14 H 1.09000 * 111.85066 * 214.58024 * 13 12 11 15 15 C 1.54159 * 109.65953 * 89.93076 * 13 12 11 16 16 C 1.53957 * 104.75318 * 224.70546 * 15 13 12 17 17 C 1.54846 * 103.15042 * 37.00056 * 16 15 13 18 18 C 1.54160 * 104.32590 * 322.50888 * 17 16 15 19 19 C 1.53004 * 111.82269 * 261.25151 * 18 17 16 20 20 N 1.46901 * 109.47071 * 299.26067 * 19 18 17 21 21 C 1.48113 * 127.84149 * 179.97438 * 11 9 7 22 22 H 0.97005 * 119.99669 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.39202 * 100.93910 * 12 11 9 24 24 H 1.08993 * 110.39892 * 338.54578 * 12 11 9 25 25 H 1.09003 * 110.46233 * 342.13263 * 15 13 12 26 26 H 1.08996 * 110.46620 * 104.70637 * 15 13 12 27 27 H 1.09001 * 109.95853 * 278.83348 * 16 15 13 28 28 H 1.08996 * 111.32050 * 155.81241 * 16 15 13 29 29 H 1.09004 * 110.46199 * 203.79809 * 17 16 15 30 30 H 1.08996 * 110.57126 * 81.27770 * 17 16 15 31 31 H 1.08995 * 109.46814 * 59.25976 * 19 18 17 32 32 H 1.09002 * 109.46698 * 179.25826 * 19 18 17 33 33 H 1.00896 * 110.99425 * 180.02562 * 20 19 18 34 34 H 1.00897 * 110.99942 * 303.95158 * 20 19 18 35 35 H 1.09005 * 110.39777 * 21.45576 * 21 11 9 36 36 H 1.09002 * 110.49367 * 259.10536 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3830 2.1070 -1.3948 5 1 1.4950 2.6199 0.8026 6 1 3.5870 1.4119 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0824 -1.2156 0.0986 9 6 1.2810 -2.4771 -0.1319 10 8 0.0642 -2.4836 -0.1244 11 7 1.9603 -3.6338 -0.2623 12 6 3.4285 -3.8269 -0.2928 13 6 3.6592 -4.9059 -1.3718 14 1 4.4952 -5.5586 -1.1206 15 6 3.8501 -4.2330 -2.7456 16 6 2.9874 -5.0643 -3.7126 17 6 1.7493 -5.4277 -2.8565 18 6 2.3212 -5.6831 -1.4479 19 6 2.5114 -7.1762 -1.1734 20 7 1.2136 -7.8590 -1.2588 21 6 1.4081 -5.0006 -0.4065 22 1 -0.4850 0.8401 -0.0004 23 1 3.7859 -4.1761 0.6760 24 1 3.9280 -2.8989 -0.5708 25 1 3.4772 -3.2090 -2.7235 26 1 4.9005 -4.2507 -3.0360 27 1 3.5263 -5.9628 -4.0133 28 1 2.6957 -4.4803 -4.5854 29 1 1.2702 -6.3276 -3.2422 30 1 1.0414 -4.5992 -2.8360 31 1 3.1930 -7.5975 -1.9123 32 1 2.9284 -7.3118 -0.1754 33 1 1.3126 -8.8472 -1.0808 34 1 0.5442 -7.4437 -0.6284 35 1 0.3815 -4.9591 -0.7705 36 1 1.4521 -5.5322 0.5440 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580044909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:41 Heat of formation + Delta-G solvation = -70.581444 kcal Electronic energy + Delta-G solvation = -17917.803721 eV Core-core repulsion = 15206.833301 eV Total energy + Delta-G solvation = -2710.970421 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33088 -38.62829 -35.44848 -34.99665 -34.58751 -30.99576 -30.38262 -28.43862 -26.36818 -25.71195 -23.69348 -21.31961 -21.19023 -19.67956 -18.44157 -17.68161 -16.84508 -16.34617 -16.11338 -15.87031 -15.46825 -15.27101 -14.80919 -14.46630 -14.26222 -13.86769 -13.61412 -13.13218 -12.92166 -12.80039 -12.66474 -12.26587 -12.03205 -11.85599 -11.72687 -11.56153 -11.50189 -11.43852 -11.38181 -10.96760 -9.89721 -9.51251 -9.13266 -8.33822 -6.87568 1.36368 1.38138 1.54116 2.20665 2.42302 2.85382 3.39178 3.47119 3.66709 3.73149 3.97899 4.28833 4.33006 4.38455 4.46009 4.48081 4.67952 4.71941 4.75359 4.81403 4.88268 5.00741 5.03180 5.14414 5.20994 5.27636 5.31667 5.41380 5.44751 5.56371 5.69170 6.00622 6.25454 6.41194 6.66518 6.83512 7.50740 8.43273 8.64103 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.034330 B = 0.007468 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.426821 B = 3748.506543 C = 4074.478786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.565 4.565 8 H 0.086 0.914 9 C 0.559 3.441 10 O -0.637 6.637 11 N -0.651 5.651 12 C 0.112 3.888 13 C -0.089 4.089 14 H 0.122 0.878 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.101 4.101 18 C -0.061 4.061 19 C 0.093 3.907 20 N -0.857 5.857 21 C 0.119 3.881 22 H 0.275 0.725 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.014 0.986 31 H 0.093 0.907 32 H 0.038 0.962 33 H 0.353 0.647 34 H 0.337 0.663 35 H 0.035 0.965 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.580 -11.978 -3.890 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.601 4.601 8 H 0.104 0.896 9 C 0.366 3.634 10 O -0.525 6.525 11 N -0.387 5.387 12 C -0.012 4.012 13 C -0.108 4.108 14 H 0.140 0.860 15 C -0.153 4.153 16 C -0.152 4.152 17 C -0.139 4.139 18 C -0.063 4.063 19 C -0.038 4.038 20 N -0.387 5.387 21 C -0.005 4.005 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.033 0.967 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.053 0.947 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.692 -11.557 -4.617 16.408 hybrid contribution -0.350 0.784 1.228 1.498 sum 10.342 -10.773 -3.390 15.314 Atomic orbital electron populations 1.70208 1.09643 1.28980 1.36514 1.27027 0.95518 1.05013 0.91160 0.85008 0.79010 0.75025 0.79281 1.18708 1.19533 1.16924 1.21343 0.94948 0.89805 1.54016 0.89595 1.18359 0.86109 0.83012 0.75915 1.90546 1.16344 1.86891 1.58675 1.48930 1.07271 1.05100 1.77410 1.22322 0.81566 0.98937 0.98338 1.22784 0.97237 0.95855 0.94947 0.86037 1.22224 1.00721 0.98113 0.94212 1.22291 0.95553 1.00258 0.97096 1.22234 0.97273 0.99897 0.94516 1.22085 0.94507 0.95096 0.94579 1.21603 0.91541 0.90359 1.00252 1.58662 1.10205 1.08036 1.61831 1.22074 0.97058 0.83967 0.97369 0.91536 0.92039 0.91412 0.94901 0.88905 0.89081 0.92494 0.89903 0.96678 0.88833 0.94380 0.83353 0.85054 0.94664 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.15 11.85 21.84 0.26 -51.89 16 2 C 0.03 1.59 5.49 85.30 0.47 2.06 16 3 Si 1.00 41.97 29.56 68.60 2.03 44.00 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.56 -33.27 9.02 24.83 0.22 -33.04 16 8 H 0.09 4.58 6.60 -2.91 -0.02 4.56 16 9 C 0.56 34.37 7.84 86.36 0.68 35.05 16 10 O -0.64 -45.32 15.31 -4.30 -0.07 -45.38 16 11 N -0.65 -31.32 3.31 -813.29 -2.69 -34.02 16 12 C 0.11 4.06 6.17 86.52 0.53 4.59 16 13 C -0.09 -2.43 3.53 -9.29 -0.03 -2.46 16 14 H 0.12 2.38 7.88 -2.39 -0.02 2.36 16 15 C -0.12 -3.19 6.24 31.31 0.20 -2.99 16 16 C -0.11 -3.01 6.86 31.55 0.22 -2.79 16 17 C -0.10 -3.25 5.78 31.62 0.18 -3.07 16 18 C -0.06 -1.80 0.72 -50.66 -0.04 -1.84 16 19 C 0.09 1.98 5.77 86.30 0.50 2.47 16 20 N -0.86 -18.04 8.90 -186.71 -1.66 -19.70 16 21 C 0.12 4.80 5.04 86.54 0.44 5.24 16 22 H 0.27 15.68 8.29 -92.70 -0.77 14.91 16 23 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.07 2.58 6.37 -2.39 -0.02 2.56 16 25 H 0.03 1.17 7.64 -2.39 -0.02 1.15 16 26 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.47 7.36 -2.38 -0.02 2.45 16 30 H 0.01 0.61 7.58 -2.39 -0.02 0.59 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.35 5.43 9.08 -89.70 -0.81 4.62 16 34 H 0.34 7.94 8.15 -89.70 -0.73 7.21 16 35 H 0.03 1.65 7.44 -2.38 -0.02 1.64 16 36 H 0.05 1.81 7.98 -2.39 -0.02 1.79 16 Total: -1.00 -79.98 285.93 0.77 -79.20 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.45 Total: 24.58 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 3.36 Total: 3.21 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.10 Total: -105.61 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.07 Total: -45.38 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -79.98 0.77 -79.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.623 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds