Wall clock time and date at job start Sun Mar 29 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 119.99960 * 2 1 4 4 H 1.48497 * 109.47464 * 269.99982 * 3 2 1 5 5 H 1.48503 * 109.47245 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47372 * 150.00034 * 3 2 1 7 7 C 1.37881 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99666 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00260 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99927 * 190.00374 * 10 9 7 12 12 C 1.50696 * 109.47344 * 72.40033 * 11 10 9 13 13 N 1.27648 * 125.76713 * 355.46495 * 12 11 10 14 14 O 1.41376 * 113.17016 * 179.67837 * 13 12 11 15 15 C 1.44257 * 107.50917 * 17.36847 * 14 13 12 16 16 C 1.51680 * 125.76918 * 175.16070 * 12 11 10 17 17 C 1.46897 * 110.99986 * 66.04649 * 10 9 7 18 18 C 1.52997 * 109.47539 * 199.31793 * 17 10 9 19 19 C 1.52998 * 117.49893 * 244.44134 * 18 17 10 20 20 C 1.52996 * 59.99980 * 252.50722 * 19 18 17 21 21 H 0.96996 * 119.99987 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46898 * 60.00470 * 9 7 2 23 23 H 1.08995 * 109.47301 * 300.00544 * 9 7 2 24 24 H 1.08997 * 109.46870 * 192.40044 * 11 10 9 25 25 H 1.09001 * 109.46984 * 312.39650 * 11 10 9 26 26 H 1.09000 * 111.00756 * 92.95748 * 15 14 13 27 27 H 1.08997 * 111.01192 * 216.82224 * 15 14 13 28 28 H 1.09004 * 110.80216 * 282.96402 * 16 12 11 29 29 H 1.08992 * 110.80964 * 46.46884 * 16 12 11 30 30 H 1.09003 * 109.46847 * 79.31449 * 17 10 9 31 31 H 1.09005 * 109.47074 * 319.32052 * 17 10 9 32 32 H 1.08999 * 115.54708 * 30.14184 * 18 17 10 33 33 H 1.09005 * 117.50259 * 359.97438 * 19 18 17 34 34 H 1.09002 * 117.49799 * 145.01602 * 19 18 17 35 35 H 1.08998 * 117.50043 * 252.51324 * 20 19 18 36 36 H 1.08999 * 117.50169 * 107.48964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 5.4501 -2.6251 0.2378 12 6 5.7336 -2.2904 1.6794 13 7 4.8682 -1.9298 2.5458 14 8 5.4261 -1.6883 3.8221 15 6 6.8495 -1.5284 3.6505 16 6 7.0945 -2.3311 2.3480 17 6 3.6513 -3.2613 -1.2529 18 6 3.7292 -4.7755 -1.0483 19 6 4.7837 -5.5431 -1.8481 20 6 3.3037 -5.6689 -2.2151 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6808 -0.8904 24 1 5.8229 -3.6253 0.0169 25 1 5.9474 -1.9013 -0.4079 26 1 7.1121 -0.4783 3.5226 27 1 7.3955 -1.9673 4.4855 28 1 7.3853 -3.3575 2.5719 29 1 7.8453 -1.8413 1.7281 30 1 4.3493 -2.9640 -2.0356 31 1 2.6381 -2.9859 -1.5459 32 1 3.5087 -5.1255 -0.0399 33 1 5.4216 -4.9694 -2.5205 34 1 5.2571 -6.3984 -1.3659 35 1 2.8034 -6.6069 -1.9743 36 1 2.9682 -5.1780 -3.1286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641935350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:36 Heat of formation + Delta-G solvation = 58.298814 kcal Electronic energy + Delta-G solvation = -17239.791819 eV Core-core repulsion = 14534.410065 eV Total energy + Delta-G solvation = -2705.381753 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77550 -37.89022 -35.73064 -32.90154 -32.08110 -30.34155 -28.29767 -27.25139 -24.20685 -22.92746 -22.16496 -20.90618 -19.94226 -19.17086 -16.85728 -16.38015 -16.01586 -15.46112 -14.83345 -14.72675 -13.99478 -13.77860 -13.51125 -13.28376 -12.71559 -12.46737 -12.11829 -11.96796 -11.85648 -11.67373 -11.29502 -11.21658 -10.95980 -10.68669 -10.39904 -10.21221 -9.88401 -9.72963 -9.55732 -9.16973 -9.01717 -8.48561 -7.48463 -5.97516 -3.93110 2.27008 3.31913 3.40464 3.43988 3.47306 4.02873 4.15653 4.49062 4.71108 4.77876 4.84740 4.93531 5.14649 5.22576 5.35348 5.38016 5.44849 5.56603 5.61237 5.65162 5.67944 5.78052 5.86128 6.07780 6.18115 6.28524 6.30513 6.44381 6.74794 6.87761 7.01223 7.64208 7.84738 7.93181 8.05616 8.71071 9.11548 9.64585 11.15858 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.011145 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.929969 B = 2511.758665 C = 4241.307133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.500 4.500 8 H 0.082 0.918 9 C 0.160 3.840 10 N -0.518 5.518 11 C 0.119 3.881 12 C 0.072 3.928 13 N -0.234 5.234 14 O -0.217 6.217 15 C 0.010 3.990 16 C -0.148 4.148 17 C 0.090 3.910 18 C -0.134 4.134 19 C -0.194 4.194 20 C -0.180 4.180 21 H 0.262 0.738 22 H 0.041 0.959 23 H -0.020 1.020 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.878 -7.179 -0.901 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.539 4.539 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.241 5.241 11 C -0.011 4.011 12 C -0.123 4.123 13 N 0.023 4.977 14 O -0.234 6.234 15 C -0.068 4.068 16 C -0.188 4.188 17 C -0.038 4.038 18 C -0.153 4.153 19 C -0.231 4.231 20 C -0.218 4.218 21 H 0.072 0.928 22 H 0.059 0.941 23 H -0.003 1.003 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.333 -7.055 -0.077 15.975 hybrid contribution 1.848 1.253 -0.692 2.338 sum 16.181 -5.802 -0.769 17.207 Atomic orbital electron populations 1.69886 1.06039 1.26664 1.51416 1.24847 0.94681 0.98643 0.94999 0.86911 0.80572 0.84431 0.78126 1.20534 1.21132 1.19319 1.20961 0.88494 0.94692 1.49731 0.90009 1.20299 0.97531 0.83490 0.95243 1.61799 1.08271 1.19681 1.34344 1.20636 0.92430 1.01218 0.86797 1.26346 0.92320 0.95949 0.97723 1.78464 1.19973 1.09601 0.89642 1.91303 1.18270 1.90943 1.22880 1.24077 0.85104 1.00122 0.97507 1.23116 0.97135 1.02839 0.95743 1.21649 1.02593 0.90046 0.89468 1.22447 1.02005 0.94062 0.96761 1.23048 0.92156 1.03292 1.04606 1.22885 0.97040 1.01702 1.00174 0.92773 0.94136 1.00270 0.88635 0.92897 0.90993 0.88368 0.88415 0.88594 0.95763 0.88150 0.87177 0.89363 0.89494 0.89187 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 7 C -0.50 -14.47 8.79 -34.44 -0.30 -14.78 16 8 H 0.08 2.57 7.55 -52.48 -0.40 2.17 16 9 C 0.16 3.94 3.46 -4.98 -0.02 3.92 16 10 N -0.52 -10.59 4.19 -237.52 -1.00 -11.59 16 11 C 0.12 1.90 5.41 -4.98 -0.03 1.88 16 12 C 0.07 1.20 6.83 -78.58 -0.54 0.66 16 13 N -0.23 -4.90 10.53 35.65 0.38 -4.52 16 14 O -0.22 -4.13 12.52 -11.36 -0.14 -4.27 16 15 C 0.01 0.13 8.25 38.18 0.32 0.44 16 16 C -0.15 -1.72 7.08 -26.38 -0.19 -1.91 16 17 C 0.09 1.64 5.08 -3.83 -0.02 1.62 16 18 C -0.13 -2.05 5.15 -90.62 -0.47 -2.51 16 19 C -0.19 -2.34 10.09 -26.73 -0.27 -2.61 16 20 C -0.18 -2.36 10.25 -26.74 -0.27 -2.64 16 21 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 22 H 0.04 1.06 5.35 -51.93 -0.28 0.78 16 23 H -0.02 -0.49 7.55 -51.93 -0.39 -0.88 16 24 H 0.10 1.27 7.25 -51.93 -0.38 0.89 16 25 H 0.05 0.78 8.05 -51.93 -0.42 0.37 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 31 H 0.10 2.14 6.58 -51.93 -0.34 1.80 16 32 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -33.43 296.83 -7.64 -41.07 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.57 Total: -1.42 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -1.88 Total: -13.96 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.15 Total: -43.54 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.14 Total: -4.27 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.43 -7.64 -41.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641935350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.366 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds