Wall clock time and date at job start Sun Mar 29 2020 22:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 119.99960 * 2 1 4 4 H 1.48497 * 109.47464 * 269.99982 * 3 2 1 5 5 H 1.48503 * 109.47245 * 30.00394 * 3 2 1 6 6 H 1.48506 * 109.47372 * 150.00034 * 3 2 1 7 7 C 1.37881 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99666 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00260 * 179.97438 * 7 2 1 10 10 N 1.46904 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99927 * 190.00374 * 10 9 7 12 12 C 1.50696 * 109.47344 * 72.40033 * 11 10 9 13 13 N 1.27648 * 125.76713 * 355.46495 * 12 11 10 14 14 O 1.41376 * 113.17016 * 179.67837 * 13 12 11 15 15 C 1.44257 * 107.50917 * 17.36847 * 14 13 12 16 16 C 1.51680 * 125.76918 * 175.16070 * 12 11 10 17 17 C 1.46897 * 110.99986 * 66.04649 * 10 9 7 18 18 C 1.52997 * 109.47539 * 199.31793 * 17 10 9 19 19 C 1.52998 * 117.49893 * 244.44134 * 18 17 10 20 20 C 1.52996 * 59.99980 * 252.50722 * 19 18 17 21 21 H 0.96996 * 119.99987 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46898 * 60.00470 * 9 7 2 23 23 H 1.08995 * 109.47301 * 300.00544 * 9 7 2 24 24 H 1.08997 * 109.46870 * 192.40044 * 11 10 9 25 25 H 1.09001 * 109.46984 * 312.39650 * 11 10 9 26 26 H 1.09000 * 111.00756 * 92.95748 * 15 14 13 27 27 H 1.08997 * 111.01192 * 216.82224 * 15 14 13 28 28 H 1.09004 * 110.80216 * 282.96402 * 16 12 11 29 29 H 1.08992 * 110.80964 * 46.46884 * 16 12 11 30 30 H 1.09003 * 109.46847 * 79.31449 * 17 10 9 31 31 H 1.09005 * 109.47074 * 319.32052 * 17 10 9 32 32 H 1.08999 * 115.54708 * 30.14184 * 18 17 10 33 33 H 1.09005 * 117.50259 * 359.97438 * 19 18 17 34 34 H 1.09002 * 117.49799 * 145.01602 * 19 18 17 35 35 H 1.08998 * 117.50043 * 252.51324 * 20 19 18 36 36 H 1.08999 * 117.50169 * 107.48964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 5.4501 -2.6251 0.2378 12 6 5.7336 -2.2904 1.6794 13 7 4.8682 -1.9298 2.5458 14 8 5.4261 -1.6883 3.8221 15 6 6.8495 -1.5284 3.6505 16 6 7.0945 -2.3311 2.3480 17 6 3.6513 -3.2613 -1.2529 18 6 3.7292 -4.7755 -1.0483 19 6 4.7837 -5.5431 -1.8481 20 6 3.3037 -5.6689 -2.2151 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8746 -0.6808 -0.8904 24 1 5.8229 -3.6253 0.0169 25 1 5.9474 -1.9013 -0.4079 26 1 7.1121 -0.4783 3.5226 27 1 7.3955 -1.9673 4.4855 28 1 7.3853 -3.3575 2.5719 29 1 7.8453 -1.8413 1.7281 30 1 4.3493 -2.9640 -2.0356 31 1 2.6381 -2.9859 -1.5459 32 1 3.5087 -5.1255 -0.0399 33 1 5.4216 -4.9694 -2.5205 34 1 5.2571 -6.3984 -1.3659 35 1 2.8034 -6.6069 -1.9743 36 1 2.9682 -5.1780 -3.1286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641935350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:36 Heat of formation + Delta-G solvation = 34.304737 kcal Electronic energy + Delta-G solvation = -17240.832280 eV Core-core repulsion = 14534.410065 eV Total energy + Delta-G solvation = -2706.422215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98484 -39.22336 -37.05865 -34.77821 -33.73355 -31.40083 -30.22273 -28.59874 -25.88958 -24.01562 -23.17006 -22.65993 -21.20378 -20.49800 -18.99660 -17.50217 -17.23685 -16.79051 -16.49477 -16.03576 -15.62745 -15.21466 -14.85737 -14.48133 -14.44319 -13.81614 -13.75599 -13.52862 -13.13252 -12.81273 -12.69487 -12.56898 -12.30275 -12.25565 -11.92254 -11.86890 -11.56495 -11.29746 -11.03476 -10.81425 -10.62828 -10.24486 -9.04143 -8.27280 -6.27584 1.05635 1.27348 1.32751 1.42162 2.32887 2.33712 2.81280 3.03948 3.07815 3.49772 3.76661 3.84814 4.04534 4.06819 4.16197 4.19484 4.36803 4.45098 4.53578 4.59407 4.73415 4.75727 4.80306 4.85513 4.91106 5.00927 5.09335 5.11757 5.22433 5.35614 5.45269 5.60516 5.98483 6.38217 6.59329 6.76957 6.81121 7.34012 8.89986 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.011145 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.929969 B = 2511.758665 C = 4241.307133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.503 4.503 8 H 0.036 0.964 9 C 0.176 3.824 10 N -0.540 5.540 11 C 0.116 3.884 12 C 0.078 3.922 13 N -0.310 5.310 14 O -0.252 6.252 15 C -0.001 4.001 16 C -0.135 4.135 17 C 0.097 3.903 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.183 4.183 21 H 0.265 0.735 22 H 0.029 0.971 23 H -0.014 1.014 24 H 0.131 0.869 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.132 0.868 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.818 -7.591 -1.798 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.049 3.951 10 N -0.264 5.264 11 C -0.012 4.012 12 C -0.117 4.117 13 N -0.055 5.055 14 O -0.268 6.268 15 C -0.078 4.078 16 C -0.174 4.174 17 C -0.030 4.030 18 C -0.178 4.178 19 C -0.194 4.194 20 C -0.220 4.220 21 H 0.074 0.926 22 H 0.047 0.953 23 H 0.003 0.997 24 H 0.148 0.852 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.150 0.850 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.304 -7.488 -0.981 19.801 hybrid contribution 0.623 1.251 -0.414 1.458 sum 18.928 -6.237 -1.395 19.977 Atomic orbital electron populations 1.70048 1.07968 1.27821 1.53242 1.25784 0.95575 1.02877 0.94787 0.85776 0.79151 0.79207 0.79138 1.18425 1.20888 1.18521 1.21218 0.91196 0.92983 1.48755 0.94592 1.19927 0.94299 0.86292 0.94616 1.61613 1.11853 1.17128 1.35787 1.20886 0.89446 1.03891 0.86997 1.26888 0.94545 0.92934 0.97298 1.78445 1.22742 1.13165 0.91149 1.91230 1.21662 1.91383 1.22523 1.24469 0.82508 1.01208 0.99630 1.23174 0.94894 1.04617 0.94736 1.21507 1.00356 0.91957 0.89193 1.22165 1.06498 0.92328 0.96783 1.23141 0.91281 1.02537 1.02450 1.22992 0.98802 1.01325 0.98900 0.92612 0.95315 0.99668 0.85152 0.90590 0.90542 0.85290 0.85747 0.85033 0.93641 0.92889 0.89123 0.87709 0.87327 0.88211 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 2 C 0.01 0.39 5.47 84.66 0.46 0.86 16 3 Si 0.94 46.80 27.47 68.60 1.88 48.69 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.26 -12.53 6.54 99.48 0.65 -11.88 16 7 C -0.50 -30.51 8.79 25.60 0.23 -30.29 16 8 H 0.04 2.44 7.55 -2.91 -0.02 2.41 16 9 C 0.18 8.73 3.46 85.56 0.30 9.03 16 10 N -0.54 -22.09 4.19 -905.39 -3.80 -25.88 16 11 C 0.12 3.41 5.41 85.56 0.46 3.87 16 12 C 0.08 2.42 6.83 46.89 0.32 2.74 16 13 N -0.31 -13.01 10.53 -40.62 -0.43 -13.44 16 14 O -0.25 -9.54 12.52 -38.28 -0.48 -10.01 16 15 C 0.00 -0.02 8.25 72.65 0.60 0.58 16 16 C -0.13 -2.57 7.08 30.82 0.22 -2.36 16 17 C 0.10 3.55 5.08 86.30 0.44 3.99 16 18 C -0.16 -4.71 5.15 -10.80 -0.06 -4.77 16 19 C -0.16 -3.21 10.09 30.59 0.31 -2.90 16 20 C -0.18 -4.49 10.25 30.59 0.31 -4.18 16 21 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 22 H 0.03 1.51 5.35 -2.39 -0.01 1.50 16 23 H -0.01 -0.68 7.55 -2.39 -0.02 -0.70 16 24 H 0.13 2.90 7.25 -2.39 -0.02 2.88 16 25 H 0.08 1.93 8.05 -2.39 -0.02 1.92 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.12 1.77 8.14 -2.38 -0.02 1.76 16 29 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.43 7.74 -2.39 -0.02 1.41 16 31 H 0.05 2.40 6.58 -2.38 -0.02 2.38 16 32 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.10 1.85 8.03 -2.38 -0.02 1.83 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -78.81 296.83 2.07 -76.74 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.00 Total: 9.04 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 3.59 Total: -23.43 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -3.92 Total: -101.03 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.48 Total: -10.01 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.88 Total: 48.69 kcal Total: -78.81 2.07 -76.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641935350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.047 kcal (2) G-P(sol) polarization free energy of solvation -78.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds