Wall clock time and date at job start Sun Mar 29 2020 23:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00097 * 2 1 4 4 H 1.48507 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46892 * 299.99191 * 3 2 1 6 6 H 1.48497 * 109.47504 * 59.99539 * 3 2 1 7 7 C 1.38947 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00557 * 180.02562 * 7 2 1 9 9 N 1.37105 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00111 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99936 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99896 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47073 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99725 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.35751 * 325.27818 * 14 13 12 16 16 C 1.52877 * 109.35796 * 85.00140 * 14 13 12 17 17 C 1.53294 * 108.58130 * 174.72898 * 16 14 13 18 18 C 1.52873 * 108.59050 * 285.55468 * 17 16 14 19 19 C 1.52070 * 110.51241 * 54.89146 * 18 17 16 20 20 H 1.09004 * 114.63661 * 194.36826 * 19 18 17 21 21 C 1.52306 * 119.83959 * 49.55363 * 19 18 17 22 22 C 1.52065 * 120.02290 * 338.29913 * 19 18 17 23 23 H 1.08999 * 117.26002 * 216.66685 * 22 19 18 24 24 H 0.97003 * 120.00007 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99617 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47191 * 60.00097 * 12 10 9 27 27 H 1.09001 * 109.46946 * 300.00138 * 12 10 9 28 28 H 1.00894 * 110.99609 * 303.95386 * 13 12 10 29 29 H 1.09000 * 109.61873 * 55.00003 * 16 14 13 30 30 H 1.09005 * 109.61542 * 294.45750 * 16 14 13 31 31 H 1.09000 * 109.61689 * 165.82444 * 17 16 14 32 32 H 1.08996 * 109.77079 * 45.37712 * 17 16 14 33 33 H 1.08994 * 109.26899 * 294.62436 * 18 17 16 34 34 H 1.09000 * 109.26951 * 175.15687 * 18 17 16 35 35 H 1.08995 * 117.53807 * 357.55177 * 21 19 18 36 36 H 1.08994 * 117.54024 * 142.80359 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9796 0.0007 14 6 1.4979 -7.2709 -0.0005 15 1 0.5820 -7.1856 0.5843 16 6 1.1474 -7.6560 -1.4378 17 6 0.5377 -9.0624 -1.4319 18 6 1.6577 -10.0782 -1.2063 19 6 2.4304 -9.7467 0.0609 20 1 3.3834 -10.2663 0.1610 21 6 1.6792 -9.4784 1.3583 22 6 2.3972 -8.3350 0.6249 23 1 3.3152 -7.9547 1.0731 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3907 -0.0002 26 1 0.6174 -4.9206 -0.8903 27 1 0.6166 -4.9209 0.8897 28 1 2.8337 -5.9125 -0.7802 29 1 2.0503 -7.6510 -2.0485 30 1 0.4256 -6.9458 -1.8413 31 1 0.0554 -9.2563 -2.3900 32 1 -0.1961 -9.1428 -0.6300 33 1 2.3378 -10.0587 -2.0577 34 1 1.2262 -11.0749 -1.1140 35 1 0.5899 -9.4946 1.3225 36 1 2.1256 -9.8424 2.2836 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658948968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:20 Heat of formation + Delta-G solvation = -46.505270 kcal Electronic energy + Delta-G solvation = -16734.857916 eV Core-core repulsion = 14024.931517 eV Total energy + Delta-G solvation = -2709.926399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78952 -39.95206 -36.47419 -35.75220 -33.65638 -33.27311 -30.61467 -27.91185 -26.11797 -24.24555 -23.50264 -21.95512 -21.12062 -19.96932 -19.36807 -18.02986 -17.11699 -16.56671 -16.36744 -16.01019 -15.40246 -15.18575 -15.01966 -14.65362 -14.34267 -14.02984 -13.57878 -13.26764 -13.25217 -12.96392 -12.81456 -12.41688 -12.35963 -12.11881 -11.97111 -11.85534 -11.52599 -11.37020 -10.74560 -10.51791 -10.34566 -10.02733 -9.25215 -8.47667 -5.96702 1.36362 1.41635 1.56144 2.03423 2.28799 2.88659 2.90037 3.19375 3.48751 3.72701 3.90631 4.09644 4.12318 4.24123 4.27510 4.33861 4.41605 4.44887 4.54941 4.61036 4.73628 4.85696 4.95254 5.07896 5.11183 5.22722 5.28139 5.37645 5.40424 5.41830 5.46544 5.92113 6.15379 6.41890 6.59071 7.11493 7.54591 8.10025 8.70068 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059678 B = 0.004239 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.075811 B = 6603.671413 C = 6759.700545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.066 3.934 13 N -0.678 5.678 14 C 0.122 3.878 15 H 0.080 0.920 16 C -0.148 4.148 17 C -0.113 4.113 18 C -0.087 4.087 19 C -0.136 4.136 20 H 0.101 0.899 21 C -0.173 4.173 22 C -0.153 4.153 23 H 0.091 0.909 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.343 0.657 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 -18.209 -1.905 18.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.066 4.066 13 N -0.309 5.309 14 C 0.013 3.987 15 H 0.098 0.902 16 C -0.187 4.187 17 C -0.152 4.152 18 C -0.124 4.124 19 C -0.154 4.154 20 H 0.119 0.881 21 C -0.210 4.210 22 C -0.171 4.171 23 H 0.109 0.891 24 H 0.088 0.912 25 H 0.231 0.769 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.162 0.838 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.986 -18.026 -1.206 18.175 hybrid contribution -0.277 1.083 -0.751 1.347 sum -2.263 -16.943 -1.957 17.205 Atomic orbital electron populations 1.69679 1.06849 1.29289 1.50315 1.26048 0.96553 1.02417 0.96172 0.84860 0.77997 0.77003 0.78399 1.19845 1.19444 1.19538 1.19717 0.92705 0.84055 1.49988 0.90392 1.41940 1.09336 1.04710 1.65014 1.20887 0.88245 0.86187 0.82194 1.90487 1.15924 1.87984 1.56692 1.21545 0.94082 0.88138 1.02824 1.60187 1.18747 1.00704 1.51269 1.21098 0.95297 0.86831 0.95472 0.90193 1.22294 1.01070 0.98427 0.96875 1.21529 0.97843 0.93248 1.02531 1.20870 0.96819 0.99302 0.95397 1.21963 1.01203 0.97105 0.95138 0.88100 1.23158 0.99706 1.02227 0.95889 1.22146 1.01040 0.89282 1.04677 0.89126 0.91246 0.76948 0.91627 0.88072 0.83824 0.92014 0.92105 0.90613 0.91368 0.91359 0.90054 0.88080 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -19.42 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -30.11 5.29 -306.97 -1.62 -31.73 16 10 C 0.44 21.52 7.82 87.66 0.69 22.21 16 11 O -0.62 -35.80 15.78 -3.07 -0.05 -35.85 16 12 C 0.07 2.38 5.96 85.56 0.51 2.89 16 13 N -0.68 -22.79 5.83 -496.27 -2.89 -25.68 16 14 C 0.12 3.10 2.41 44.78 0.11 3.21 16 15 H 0.08 1.97 7.70 -2.39 -0.02 1.95 16 16 C -0.15 -3.17 5.17 30.65 0.16 -3.01 16 17 C -0.11 -1.86 5.70 30.65 0.17 -1.69 16 18 C -0.09 -1.34 5.93 30.25 0.18 -1.16 16 19 C -0.14 -2.50 6.00 -11.64 -0.07 -2.57 16 20 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 21 C -0.17 -3.22 9.66 30.58 0.30 -2.93 16 22 C -0.15 -3.62 5.83 -10.98 -0.06 -3.68 16 23 H 0.09 2.55 8.08 -2.39 -0.02 2.53 16 24 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.40 19.72 7.90 -92.71 -0.73 18.98 16 26 H 0.07 2.07 7.54 -2.39 -0.02 2.05 16 27 H 0.10 3.32 8.05 -2.39 -0.02 3.30 16 28 H 0.34 12.20 8.10 -89.70 -0.73 11.48 16 29 H 0.06 1.41 7.94 -2.39 -0.02 1.39 16 30 H 0.06 1.33 7.60 -2.38 -0.02 1.31 16 31 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.07 7.12 -2.39 -0.02 1.06 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.71 7.27 -2.39 -0.02 1.70 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.97 293.94 0.63 -65.34 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.37 Total: 37.88 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 3.26 Total: -5.53 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.23 Total: -107.26 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.05 Total: -35.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.97 0.63 -65.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658948968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.836 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds