Wall clock time and date at job start Sun Mar 29 2020 22:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47301 * 2 1 4 4 C 1.50693 * 109.47271 * 239.99762 * 2 1 3 5 5 H 1.08004 * 120.00634 * 240.00300 * 4 2 1 6 6 C 1.37880 * 120.00027 * 60.00128 * 4 2 1 7 7 N 1.31519 * 119.99697 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46742 * 60.00527 * 8 6 4 10 10 H 1.48498 * 109.47265 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47114 * 300.00412 * 8 6 4 12 12 N 1.46903 * 109.47109 * 119.99856 * 2 1 3 13 13 C 1.46905 * 110.99515 * 58.95092 * 12 2 1 14 14 C 1.46904 * 111.00102 * 295.00341 * 12 2 1 15 15 C 1.50700 * 109.46943 * 189.99954 * 14 12 2 16 16 N 1.31869 * 119.63208 * 269.97323 * 15 14 12 17 17 C 1.31853 * 121.74784 * 180.02562 * 16 15 14 18 18 C 1.38235 * 120.81875 * 359.97438 * 17 16 15 19 19 C 1.38586 * 119.18965 * 0.02562 * 18 17 16 20 20 C 1.38423 * 119.63722 * 89.99929 * 15 14 12 21 21 F 1.35099 * 120.44222 * 359.95147 * 20 15 14 22 22 H 1.08986 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46882 * 300.00364 * 1 2 3 24 24 H 1.08998 * 109.46402 * 59.99842 * 1 2 3 25 25 H 0.97002 * 119.99613 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.47211 * 296.04668 * 13 12 2 27 27 H 1.08998 * 109.47174 * 56.05507 * 13 12 2 28 28 H 1.09004 * 109.46590 * 176.04658 * 13 12 2 29 29 H 1.09000 * 109.47173 * 69.99562 * 14 12 2 30 30 H 1.09003 * 109.46640 * 309.99613 * 14 12 2 31 31 H 1.08003 * 119.58779 * 180.27492 * 17 16 15 32 32 H 1.08005 * 120.40004 * 180.02562 * 18 17 16 33 33 H 1.08006 * 120.79855 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8270 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0197 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5571 3.6006 16 7 1.8046 -1.5370 4.2800 17 6 2.3961 -2.0887 5.3213 18 6 3.6398 -1.6554 5.7411 19 6 4.2651 -0.6275 5.0534 20 6 3.6121 -0.0699 3.9619 21 9 4.1839 0.9339 3.2615 22 1 -0.3633 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 0.7096 1.1618 -3.4844 26 1 0.4419 -2.0730 1.3347 27 1 1.8167 -2.5950 0.3319 28 1 1.9616 -2.5868 2.1059 29 1 0.5722 -0.0345 2.5726 30 1 1.9297 1.0870 2.3125 31 1 1.9049 -2.8924 5.8497 32 1 4.1183 -2.1124 6.5948 33 1 5.2371 -0.2689 5.3587 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658956472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:48 Heat of formation + Delta-G solvation = 0.740259 kcal Electronic energy + Delta-G solvation = -16985.445966 eV Core-core repulsion = 14154.107981 eV Total energy + Delta-G solvation = -2831.337985 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.69491 -40.01446 -37.07569 -33.16714 -32.20961 -31.13920 -28.53570 -26.98096 -25.13495 -24.09456 -23.40951 -21.74912 -19.22652 -17.48000 -17.07301 -16.41278 -15.93273 -15.70952 -14.99405 -14.26948 -14.02795 -13.72007 -13.55077 -13.10852 -12.97743 -12.77030 -12.46153 -11.85951 -11.40824 -11.03554 -11.00148 -10.74066 -10.66680 -10.46908 -9.99269 -9.91657 -9.79282 -9.41175 -8.90554 -8.67764 -8.35594 -7.15558 -5.98072 -4.01603 1.01724 1.14467 3.35248 3.39094 3.42290 3.67357 4.14738 4.42785 4.47747 4.69105 4.80312 4.94597 5.26282 5.34425 5.45865 5.73296 5.78431 5.91018 6.14395 6.19429 6.34073 6.52942 6.68366 6.75844 6.88256 6.96895 7.14704 7.49102 7.74363 7.84685 7.96604 8.13389 8.40113 8.59703 9.03359 9.62861 11.09123 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.006156 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.399592 B = 4547.593579 C = 4645.800403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.528 5.528 13 C 0.038 3.962 14 C 0.096 3.904 15 C 0.126 3.874 16 N -0.454 5.454 17 C 0.084 3.916 18 C -0.156 4.156 19 C -0.115 4.115 20 C 0.067 3.933 21 F -0.122 7.122 22 H 0.031 0.969 23 H 0.008 0.992 24 H 0.089 0.911 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.585 -3.373 15.121 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.252 5.252 13 C -0.110 4.110 14 C -0.032 4.032 15 C -0.013 4.013 16 N -0.162 5.162 17 C -0.074 4.074 18 C -0.176 4.176 19 C -0.142 4.142 20 C 0.045 3.955 21 F -0.100 7.100 22 H 0.050 0.950 23 H 0.027 0.973 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.215 -3.522 14.641 15.398 hybrid contribution 0.407 0.022 -0.586 0.714 sum 3.623 -3.500 14.055 14.930 Atomic orbital electron populations 1.22408 1.00670 0.99526 1.00561 1.19338 0.89890 0.94610 0.85560 0.94137 1.21059 1.30650 1.12492 0.89594 0.91990 1.24918 0.95233 0.95141 0.98948 1.69880 1.37018 1.22988 1.23491 0.86569 0.79215 0.79583 0.82077 1.20384 1.21383 1.20253 1.62422 1.59481 1.02281 1.01023 1.22216 0.97175 0.90624 1.01020 1.20942 0.97130 0.97662 0.87504 1.21643 0.91022 0.92433 0.96247 1.67651 1.35170 1.07488 1.05937 1.22800 0.92666 0.98627 0.93271 1.21971 0.96725 0.97617 1.01331 1.21624 1.00949 0.97006 0.94626 1.18558 0.93732 0.90043 0.93165 1.91543 1.83902 1.57096 1.77482 0.94958 0.97318 0.89280 0.92955 0.96140 0.90938 0.93861 0.92937 0.89676 0.82397 0.84269 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.28 37.16 0.31 -3.93 16 2 C 0.21 5.44 2.34 -68.87 -0.16 5.28 16 3 H 0.04 1.14 8.03 -51.93 -0.42 0.72 16 4 C -0.50 -13.87 7.88 -34.44 -0.27 -14.14 16 5 H 0.06 1.73 6.77 -52.48 -0.36 1.37 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.64 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.53 -11.90 4.73 -237.72 -1.13 -13.02 16 13 C 0.04 0.81 8.52 60.07 0.51 1.32 16 14 C 0.10 1.89 4.52 -4.97 -0.02 1.86 16 15 C 0.13 2.18 5.55 -82.51 -0.46 1.72 16 16 N -0.45 -7.20 9.21 -9.42 -0.09 -7.29 16 17 C 0.08 1.00 11.18 -17.54 -0.20 0.80 16 18 C -0.16 -1.60 10.11 -39.45 -0.40 -2.00 16 19 C -0.12 -1.39 10.16 -39.22 -0.40 -1.78 16 20 C 0.07 1.06 7.27 -39.28 -0.29 0.77 16 21 F -0.12 -2.10 16.49 2.25 0.04 -2.06 16 22 H 0.03 0.77 6.47 -51.94 -0.34 0.44 16 23 H 0.01 0.18 6.75 -51.93 -0.35 -0.17 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.02 0.43 6.51 -51.93 -0.34 0.09 16 27 H 0.07 1.62 6.41 -51.93 -0.33 1.29 16 28 H 0.04 0.85 6.57 -51.93 -0.34 0.51 16 29 H 0.05 1.03 6.94 -51.93 -0.36 0.67 16 30 H 0.08 1.65 7.49 -51.93 -0.39 1.26 16 31 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 274.23 15.07 4.13 4.13 Total: -1.00 -29.92 274.23 -6.84 -36.76 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.94 Total: -1.51 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.47 Total: -8.57 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.58 Total: -45.33 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.92 -6.84 -36.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658956472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds