Wall clock time and date at job start Sun Mar 29 2020 22:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47301 * 2 1 4 4 C 1.50693 * 109.47271 * 239.99762 * 2 1 3 5 5 H 1.08004 * 120.00634 * 240.00300 * 4 2 1 6 6 C 1.37880 * 120.00027 * 60.00128 * 4 2 1 7 7 N 1.31519 * 119.99697 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00308 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46742 * 60.00527 * 8 6 4 10 10 H 1.48498 * 109.47265 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47114 * 300.00412 * 8 6 4 12 12 N 1.46903 * 109.47109 * 119.99856 * 2 1 3 13 13 C 1.46905 * 110.99515 * 58.95092 * 12 2 1 14 14 C 1.46904 * 111.00102 * 295.00341 * 12 2 1 15 15 C 1.50700 * 109.46943 * 189.99954 * 14 12 2 16 16 N 1.31869 * 119.63208 * 269.97323 * 15 14 12 17 17 C 1.31853 * 121.74784 * 180.02562 * 16 15 14 18 18 C 1.38235 * 120.81875 * 359.97438 * 17 16 15 19 19 C 1.38586 * 119.18965 * 0.02562 * 18 17 16 20 20 C 1.38423 * 119.63722 * 89.99929 * 15 14 12 21 21 F 1.35099 * 120.44222 * 359.95147 * 20 15 14 22 22 H 1.08986 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46882 * 300.00364 * 1 2 3 24 24 H 1.08998 * 109.46402 * 59.99842 * 1 2 3 25 25 H 0.97002 * 119.99613 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.47211 * 296.04668 * 13 12 2 27 27 H 1.08998 * 109.47174 * 56.05507 * 13 12 2 28 28 H 1.09004 * 109.46590 * 176.04658 * 13 12 2 29 29 H 1.09000 * 109.47173 * 69.99562 * 14 12 2 30 30 H 1.09003 * 109.46640 * 309.99613 * 14 12 2 31 31 H 1.08003 * 119.58779 * 180.27492 * 17 16 15 32 32 H 1.08005 * 120.40004 * 180.02562 * 18 17 16 33 33 H 1.08006 * 120.79855 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8280 -2.5198 -4.0081 10 1 1.8270 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0076 12 7 2.0197 -0.6925 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5571 3.6006 16 7 1.8046 -1.5370 4.2800 17 6 2.3961 -2.0887 5.3213 18 6 3.6398 -1.6554 5.7411 19 6 4.2651 -0.6275 5.0534 20 6 3.6121 -0.0699 3.9619 21 9 4.1839 0.9339 3.2615 22 1 -0.3633 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 0.7096 1.1618 -3.4844 26 1 0.4419 -2.0730 1.3347 27 1 1.8167 -2.5950 0.3319 28 1 1.9616 -2.5868 2.1059 29 1 0.5722 -0.0345 2.5726 30 1 1.9297 1.0870 2.3125 31 1 1.9049 -2.8924 5.8497 32 1 4.1183 -2.1124 6.5948 33 1 5.2371 -0.2689 5.3587 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658956472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:47 Heat of formation + Delta-G solvation = -19.109695 kcal Electronic energy + Delta-G solvation = -16986.306724 eV Core-core repulsion = 14154.107981 eV Total energy + Delta-G solvation = -2832.198743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.91462 -41.10999 -38.83691 -34.98904 -33.46576 -32.44291 -30.38411 -28.49905 -27.22243 -25.71056 -24.44530 -23.12028 -21.09286 -18.60792 -18.28040 -18.16559 -17.42256 -17.00678 -16.66526 -16.05838 -15.45108 -15.23802 -14.82701 -14.52767 -14.30845 -14.17544 -13.90861 -13.54836 -13.07568 -12.85965 -12.72595 -12.64063 -12.54155 -12.31369 -12.02364 -11.80966 -10.97730 -10.80596 -10.51860 -10.48649 -9.82847 -8.94981 -8.11258 -6.22581 -0.03275 0.16218 1.42793 1.44814 1.52437 2.42097 2.62664 3.07597 3.17664 3.30454 3.61708 3.67484 3.84201 4.05003 4.38387 4.47835 4.57293 4.61920 4.74812 4.79648 4.82817 4.88502 4.99619 5.06271 5.12568 5.15245 5.49688 5.67961 5.70336 5.75625 6.13727 6.41727 6.63916 6.88372 6.92913 7.46029 8.95057 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.006156 C = 0.006026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.399592 B = 4547.593579 C = 4645.800403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.007 0.993 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.538 5.538 13 C 0.051 3.949 14 C 0.102 3.898 15 C 0.097 3.903 16 N -0.480 5.480 17 C 0.083 3.917 18 C -0.131 4.131 19 C -0.108 4.108 20 C 0.039 3.961 21 F -0.141 7.141 22 H 0.032 0.968 23 H 0.024 0.976 24 H 0.064 0.936 25 H 0.262 0.738 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.195 0.805 32 H 0.190 0.810 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -5.189 17.085 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.025 0.975 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.262 5.262 13 C -0.097 4.097 14 C -0.026 4.026 15 C -0.041 4.041 16 N -0.190 5.190 17 C -0.075 4.075 18 C -0.150 4.150 19 C -0.134 4.134 20 C 0.017 3.983 21 F -0.120 7.120 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.212 0.788 32 H 0.207 0.793 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.288 -5.336 16.616 17.971 hybrid contribution 0.099 0.542 -1.012 1.152 sum 4.387 -4.793 15.604 16.903 Atomic orbital electron populations 1.22192 1.00043 0.99295 1.00085 1.19093 0.90244 0.92963 0.86773 0.97523 1.21308 1.30907 1.12565 0.90815 0.92570 1.25706 0.95321 0.95809 1.01830 1.70010 1.37729 1.24067 1.24164 0.85556 0.78638 0.78678 0.78409 1.19574 1.20791 1.19905 1.62282 1.59773 1.02895 1.01215 1.22079 0.96954 0.89809 1.00844 1.20788 0.97146 0.97101 0.87589 1.21142 0.92027 0.94424 0.96527 1.67563 1.36258 1.07639 1.07526 1.23532 0.93438 0.98628 0.91926 1.22521 0.95513 0.95632 1.01337 1.22049 1.01867 0.96647 0.92876 1.18873 0.93964 0.90615 0.94833 1.91489 1.84122 1.58073 1.78275 0.94880 0.95701 0.91701 0.92868 0.96397 0.92528 0.92140 0.93609 0.90897 0.78773 0.79278 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.96 8.28 71.98 0.60 -7.36 16 2 C 0.22 11.54 2.34 44.17 0.10 11.64 16 3 H 0.01 0.41 8.03 -2.39 -0.02 0.39 16 4 C -0.52 -29.47 7.88 25.60 0.20 -29.27 16 5 H 0.06 3.20 6.77 -2.91 -0.02 3.18 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.54 -24.96 4.73 -906.02 -4.29 -29.25 16 13 C 0.05 2.20 8.52 127.69 1.09 3.28 16 14 C 0.10 4.15 4.52 85.56 0.39 4.54 16 15 C 0.10 3.32 5.55 42.60 0.24 3.56 16 16 N -0.48 -14.47 9.21 -183.71 -1.69 -16.16 16 17 C 0.08 1.65 11.18 84.69 0.95 2.59 16 18 C -0.13 -2.01 10.11 22.35 0.23 -1.79 16 19 C -0.11 -2.23 10.16 22.51 0.23 -2.00 16 20 C 0.04 1.21 7.27 22.47 0.16 1.37 16 21 F -0.14 -4.97 16.49 44.97 0.74 -4.23 16 22 H 0.03 1.62 6.47 -2.39 -0.02 1.60 16 23 H 0.02 1.13 6.75 -2.38 -0.02 1.11 16 24 H 0.06 3.61 6.07 -2.39 -0.01 3.60 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.02 0.75 6.51 -2.39 -0.02 0.74 16 27 H 0.06 2.56 6.41 -2.39 -0.02 2.54 16 28 H 0.06 2.35 6.57 -2.38 -0.02 2.33 16 29 H 0.05 1.86 6.94 -2.39 -0.02 1.85 16 30 H 0.07 3.03 7.49 -2.39 -0.02 3.01 16 31 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -67.03 274.23 2.77 -64.26 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.11 Total: 4.74 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 4.63 Total: -12.31 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -5.74 Total: -99.10 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.74 Total: -4.23 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -67.03 2.77 -64.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658956472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.152 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds