Wall clock time and date at job start Sun Mar 29 2020 23:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00367 * 2 1 4 4 H 1.48500 * 109.46766 * 239.99850 * 3 2 1 5 5 H 1.48503 * 109.47097 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47467 * 119.99763 * 3 2 1 7 7 C 1.38954 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99437 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00549 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99467 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00558 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47389 * 179.97438 * 12 10 9 14 14 C 1.45900 * 110.91600 * 97.00305 * 13 12 10 15 15 C 1.53328 * 86.09435 * 138.67961 * 14 13 12 16 16 H 1.09002 * 111.42427 * 86.42678 * 15 14 13 17 17 C 1.50413 * 115.80453 * 214.93058 * 15 14 13 18 18 C 1.51619 * 114.50681 * 70.13551 * 17 15 14 19 19 C 1.52625 * 110.99354 * 46.72574 * 18 17 15 20 20 C 1.52981 * 108.75640 * 296.02093 * 19 18 17 21 21 C 1.48605 * 110.99845 * 196.01215 * 13 12 10 22 22 H 1.09006 * 115.06331 * 106.45173 * 21 13 12 23 23 H 0.97004 * 119.99868 * 0.02562 * 1 2 3 24 24 H 0.97006 * 120.00094 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47414 * 59.99794 * 12 10 9 26 26 H 1.09002 * 109.47170 * 299.99853 * 12 10 9 27 27 H 1.09006 * 113.92534 * 24.23263 * 14 13 12 28 28 H 1.09004 * 113.23675 * 253.04178 * 14 13 12 29 29 H 1.09000 * 108.47475 * 191.44164 * 17 15 14 30 30 H 1.09000 * 108.47575 * 309.00071 * 17 15 14 31 31 H 1.08994 * 109.17600 * 167.11295 * 18 17 15 32 32 H 1.09000 * 109.17858 * 286.33800 * 18 17 15 33 33 H 1.08997 * 109.59710 * 55.80660 * 19 18 17 34 34 H 1.09001 * 109.59079 * 176.10183 * 19 18 17 35 35 H 1.09007 * 109.50413 * 183.68384 * 20 19 18 36 36 H 1.08990 * 109.50651 * 303.76938 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6961 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0011 13 7 2.1981 -5.9796 0.0004 14 6 2.4113 -6.4835 1.3529 15 6 2.3689 -7.8821 0.7259 16 1 3.3504 -8.1848 0.3611 17 6 1.7444 -8.9593 1.5697 18 6 0.2439 -8.8300 1.7453 19 6 -0.4412 -8.5548 0.4096 20 6 0.0352 -7.2000 -0.1177 21 6 1.5301 -7.2509 -0.3818 22 1 1.7633 -7.6120 -1.3835 23 1 -0.4850 0.8401 -0.0004 24 1 0.3533 -2.3906 0.0005 25 1 0.6165 -4.9209 -0.8886 26 1 0.6172 -4.9205 0.8914 27 1 1.5860 -6.2805 2.0355 28 1 3.3839 -6.2133 1.7642 29 1 1.9565 -9.9246 1.1101 30 1 2.2083 -8.9381 2.5558 31 1 -0.1486 -9.7563 2.1648 32 1 0.0331 -8.0097 2.4315 33 1 -0.1800 -9.3368 -0.3033 34 1 -1.5219 -8.5348 0.5504 35 1 -0.4957 -6.9610 -1.0393 36 1 -0.1632 -6.4294 0.6270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659296121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:58 Heat of formation + Delta-G solvation = -7.479403 kcal Electronic energy + Delta-G solvation = -17286.544536 eV Core-core repulsion = 14578.310425 eV Total energy + Delta-G solvation = -2708.234111 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21216 -37.82675 -35.14173 -33.78550 -31.91737 -31.11073 -29.32864 -26.56986 -25.15853 -24.07994 -22.18739 -21.07778 -18.99780 -17.88531 -17.61915 -16.42295 -16.10787 -15.17834 -14.91733 -14.55772 -14.29622 -13.90956 -13.65434 -13.51432 -12.91240 -12.60080 -12.21687 -11.92851 -11.64527 -11.53446 -11.38793 -11.04279 -11.03535 -10.68619 -10.57614 -10.40231 -10.17764 -10.00557 -9.87786 -9.42657 -8.58843 -8.01241 -7.89160 -6.35593 -3.76012 3.24147 3.28863 3.33750 3.98789 4.00804 4.27143 4.41229 4.59595 4.88619 4.93829 5.05022 5.10412 5.25353 5.29023 5.36768 5.49013 5.58482 5.59898 5.71737 5.77161 5.84450 5.86405 5.93855 6.01806 6.04820 6.13819 6.20011 6.26632 6.38979 6.48061 6.76012 7.35744 7.60612 8.12986 8.69903 9.25227 9.62298 10.15743 10.82465 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051582 B = 0.005107 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.691718 B = 5481.366647 C = 5761.022530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.101 0.899 9 N -0.569 5.569 10 C 0.447 3.553 11 O -0.575 6.575 12 C 0.011 3.989 13 N -0.446 5.446 14 C 0.011 3.989 15 C -0.106 4.106 16 H 0.092 0.908 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.139 4.139 21 C 0.034 3.966 22 H 0.094 0.906 23 H 0.271 0.729 24 H 0.391 0.609 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -16.390 2.340 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.207 5.207 10 C 0.232 3.768 11 O -0.458 6.458 12 C -0.121 4.121 13 N -0.167 5.167 14 C -0.118 4.118 15 C -0.125 4.125 16 H 0.110 0.890 17 C -0.144 4.144 18 C -0.156 4.156 19 C -0.151 4.151 20 C -0.177 4.177 21 C -0.075 4.075 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.224 0.776 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.973 -15.929 1.951 16.169 hybrid contribution -1.000 0.795 0.417 1.343 sum -2.973 -15.135 2.367 15.605 Atomic orbital electron populations 1.69609 1.05904 1.28103 1.51053 1.25236 0.95623 0.99610 0.97535 0.85928 0.78745 0.80560 0.79037 1.19937 1.21015 1.19971 1.19646 0.93306 0.82316 1.47415 0.88088 1.41870 1.09080 1.04574 1.65140 1.19794 0.88432 0.84477 0.84122 1.90514 1.13757 1.87035 1.54502 1.22498 0.94957 0.92964 1.01699 1.68177 1.33340 1.00426 1.14716 1.23598 1.02384 0.93625 0.92224 1.22040 0.99943 0.94355 0.96163 0.88958 1.20562 0.95462 0.98416 0.99979 1.21177 0.95298 1.01528 0.97579 1.21338 0.99534 0.97157 0.97040 1.21835 0.95509 0.98331 1.02052 1.23153 0.92614 0.92099 0.99638 0.88796 0.91937 0.77617 0.89632 0.92181 0.91790 0.89574 0.92277 0.91793 0.92045 0.92240 0.91850 0.91908 0.91137 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.05 55.50 0.72 -24.43 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -15.00 5.29 -10.97 -0.06 -15.06 16 10 C 0.45 11.16 7.85 -10.99 -0.09 11.07 16 11 O -0.58 -16.61 16.01 5.54 0.09 -16.52 16 12 C 0.01 0.20 4.27 -4.98 -0.02 0.18 16 13 N -0.45 -7.88 5.62 -243.67 -1.37 -9.25 16 14 C 0.01 0.17 7.09 -4.41 -0.03 0.14 16 15 C -0.11 -1.30 3.90 -92.15 -0.36 -1.66 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.11 -1.03 5.50 -28.72 -0.16 -1.19 16 18 C -0.12 -1.09 5.79 -27.62 -0.16 -1.25 16 19 C -0.11 -1.06 5.92 -26.93 -0.16 -1.22 16 20 C -0.14 -1.60 4.26 -27.30 -0.12 -1.72 16 21 C 0.03 0.46 4.58 -67.75 -0.31 0.15 16 22 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 25 H 0.09 1.48 7.42 -51.93 -0.39 1.09 16 26 H 0.06 1.02 5.84 -51.93 -0.30 0.72 16 27 H 0.06 0.93 6.88 -51.93 -0.36 0.57 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.78 8.13 -51.92 -0.42 0.36 16 36 H 0.07 0.91 5.12 -51.93 -0.27 0.65 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -32.03 285.04 -8.35 -40.37 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.36 Total: 7.77 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.64 Total: -3.71 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.70 Total: -48.73 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.03 -8.35 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659296121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds