Wall clock time and date at job start Sun Mar 29 2020 23:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00367 * 2 1 4 4 H 1.48500 * 109.46766 * 239.99850 * 3 2 1 5 5 H 1.48503 * 109.47097 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47467 * 119.99763 * 3 2 1 7 7 C 1.38954 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99437 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00304 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00549 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99467 * 359.97438 * 10 9 7 12 12 C 1.50692 * 120.00558 * 179.97438 * 10 9 7 13 13 N 1.46907 * 109.47389 * 179.97438 * 12 10 9 14 14 C 1.45900 * 110.91600 * 97.00305 * 13 12 10 15 15 C 1.53328 * 86.09435 * 138.67961 * 14 13 12 16 16 H 1.09002 * 111.42427 * 86.42678 * 15 14 13 17 17 C 1.50413 * 115.80453 * 214.93058 * 15 14 13 18 18 C 1.51619 * 114.50681 * 70.13551 * 17 15 14 19 19 C 1.52625 * 110.99354 * 46.72574 * 18 17 15 20 20 C 1.52981 * 108.75640 * 296.02093 * 19 18 17 21 21 C 1.48605 * 110.99845 * 196.01215 * 13 12 10 22 22 H 1.09006 * 115.06331 * 106.45173 * 21 13 12 23 23 H 0.97004 * 119.99868 * 0.02562 * 1 2 3 24 24 H 0.97006 * 120.00094 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47414 * 59.99794 * 12 10 9 26 26 H 1.09002 * 109.47170 * 299.99853 * 12 10 9 27 27 H 1.09006 * 113.92534 * 24.23263 * 14 13 12 28 28 H 1.09004 * 113.23675 * 253.04178 * 14 13 12 29 29 H 1.09000 * 108.47475 * 191.44164 * 17 15 14 30 30 H 1.09000 * 108.47575 * 309.00071 * 17 15 14 31 31 H 1.08994 * 109.17600 * 167.11295 * 18 17 15 32 32 H 1.09000 * 109.17858 * 286.33800 * 18 17 15 33 33 H 1.08997 * 109.59710 * 55.80660 * 19 18 17 34 34 H 1.09001 * 109.59079 * 176.10183 * 19 18 17 35 35 H 1.09007 * 109.50413 * 183.68384 * 20 19 18 36 36 H 1.08990 * 109.50651 * 303.76938 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6961 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8629 0.0011 13 7 2.1981 -5.9796 0.0004 14 6 2.4113 -6.4835 1.3529 15 6 2.3689 -7.8821 0.7259 16 1 3.3504 -8.1848 0.3611 17 6 1.7444 -8.9593 1.5697 18 6 0.2439 -8.8300 1.7453 19 6 -0.4412 -8.5548 0.4096 20 6 0.0352 -7.2000 -0.1177 21 6 1.5301 -7.2509 -0.3818 22 1 1.7633 -7.6120 -1.3835 23 1 -0.4850 0.8401 -0.0004 24 1 0.3533 -2.3906 0.0005 25 1 0.6165 -4.9209 -0.8886 26 1 0.6172 -4.9205 0.8914 27 1 1.5860 -6.2805 2.0355 28 1 3.3839 -6.2133 1.7642 29 1 1.9565 -9.9246 1.1101 30 1 2.2083 -8.9381 2.5558 31 1 -0.1486 -9.7563 2.1648 32 1 0.0331 -8.0097 2.4315 33 1 -0.1800 -9.3368 -0.3033 34 1 -1.5219 -8.5348 0.5504 35 1 -0.4957 -6.9610 -1.0393 36 1 -0.1632 -6.4294 0.6270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659296121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:57 Heat of formation + Delta-G solvation = -30.853040 kcal Electronic energy + Delta-G solvation = -17287.558093 eV Core-core repulsion = 14578.310425 eV Total energy + Delta-G solvation = -2709.247668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35352 -39.79825 -36.22771 -35.78498 -33.36568 -32.79432 -30.60455 -27.82652 -26.78366 -25.48264 -23.30288 -22.10644 -20.82279 -19.84826 -18.74149 -17.90962 -17.36486 -16.66160 -16.39480 -16.22107 -15.66793 -15.48313 -14.96453 -14.58236 -14.35590 -13.90908 -13.54800 -13.52367 -13.01293 -12.87632 -12.76086 -12.47309 -12.40085 -12.12649 -11.93613 -11.82432 -11.51078 -11.48553 -10.96783 -10.81333 -10.37615 -10.02496 -9.51911 -8.47421 -5.96649 1.38798 1.40038 1.51531 2.04109 2.27968 2.78055 3.17913 3.34991 3.50375 3.64095 4.00680 4.11315 4.16551 4.21065 4.27577 4.37699 4.43427 4.46491 4.51657 4.71803 4.76927 4.85576 4.93583 5.06699 5.12685 5.21688 5.32964 5.37995 5.39126 5.44214 5.53350 5.58063 5.93647 6.14793 6.60135 7.11900 7.55054 8.12251 8.69932 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051582 B = 0.005107 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.691718 B = 5481.366647 C = 5761.022530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.621 6.621 12 C 0.028 3.972 13 N -0.485 5.485 14 C 0.005 3.995 15 C -0.088 4.088 16 H 0.088 0.912 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.108 4.108 20 C -0.137 4.137 21 C 0.039 3.961 22 H 0.098 0.902 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 -17.492 2.461 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.094 0.906 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.103 4.103 13 N -0.207 5.207 14 C -0.125 4.125 15 C -0.107 4.107 16 H 0.107 0.893 17 C -0.141 4.141 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.176 4.176 21 C -0.069 4.069 22 H 0.116 0.884 23 H 0.088 0.912 24 H 0.229 0.771 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.214 -17.052 2.073 17.476 hybrid contribution -0.612 1.116 0.366 1.325 sum -3.826 -15.936 2.438 16.569 Atomic orbital electron populations 1.69669 1.06816 1.29390 1.50288 1.26044 0.96578 1.02358 0.96180 0.84980 0.77782 0.76574 0.78932 1.19767 1.19190 1.19720 1.19622 0.92628 0.84135 1.50211 0.90615 1.41943 1.09226 1.04680 1.65442 1.20932 0.88308 0.86056 0.82088 1.90472 1.16041 1.87991 1.56184 1.22339 0.94549 0.90118 1.03316 1.68122 1.34449 1.01717 1.16377 1.23640 1.01414 0.95835 0.91578 1.21936 0.99919 0.93438 0.95446 0.89332 1.20552 0.95866 0.97911 0.99772 1.21200 0.94744 1.02224 0.97408 1.21330 1.00233 0.95818 0.97195 1.21824 0.94018 0.99598 1.02113 1.23266 0.93879 0.89509 1.00254 0.88387 0.91234 0.77060 0.87981 0.90248 0.91024 0.91887 0.90508 0.91261 0.90055 0.93131 0.90780 0.90695 0.90599 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.99 29.55 68.60 2.03 46.02 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.34 -19.90 9.68 84.04 0.81 -19.08 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.58 -31.08 5.29 -306.99 -1.62 -32.70 16 10 C 0.44 22.53 7.85 87.65 0.69 23.22 16 11 O -0.62 -37.32 16.01 -3.09 -0.05 -37.37 16 12 C 0.03 1.06 4.27 85.55 0.37 1.43 16 13 N -0.48 -17.12 5.62 -924.84 -5.20 -22.32 16 14 C 0.00 0.14 7.09 86.46 0.61 0.75 16 15 C -0.09 -2.04 3.90 -11.58 -0.05 -2.09 16 16 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.10 -1.72 5.50 29.30 0.16 -1.56 16 18 C -0.12 -1.80 5.79 30.02 0.17 -1.63 16 19 C -0.11 -1.67 5.92 30.46 0.18 -1.49 16 20 C -0.14 -2.86 4.26 30.22 0.13 -2.73 16 21 C 0.04 0.99 4.58 43.95 0.20 1.19 16 22 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 23 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.40 20.16 7.90 -92.70 -0.73 19.43 16 25 H 0.10 3.45 7.42 -2.39 -0.02 3.43 16 26 H 0.08 2.66 5.84 -2.39 -0.01 2.65 16 27 H 0.07 2.05 6.88 -2.38 -0.02 2.03 16 28 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.87 7.98 -2.39 -0.02 0.85 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.50 8.13 -2.38 -0.02 1.48 16 36 H 0.06 1.42 5.12 -2.39 -0.01 1.41 16 Total: -1.00 -70.05 285.04 -0.47 -70.52 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.34 Total: 28.49 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 3.75 Total: -2.16 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.54 Total: -105.49 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.05 Total: -37.37 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.05 -0.47 -70.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659296121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.666 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds