Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36937 * 119.99771 * 2 1 4 4 H 1.08004 * 119.99646 * 202.34721 * 3 2 1 5 5 C 1.38807 * 120.00035 * 22.34418 * 3 2 1 6 6 N 1.31615 * 120.00226 * 11.35150 * 5 3 2 7 7 Si 1.86806 * 119.99855 * 191.34321 * 5 3 2 8 8 H 1.48500 * 109.46770 * 60.00478 * 7 5 3 9 9 H 1.48497 * 109.46804 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47125 * 300.00386 * 7 5 3 11 11 C 1.46501 * 119.99715 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46803 * 269.99397 * 11 2 1 13 13 N 1.46501 * 109.46803 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99743 * 180.02562 * 13 12 11 15 15 O 1.21607 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.47431 * 119.99673 * 180.02562 * 14 13 12 17 17 C 1.41280 * 126.41588 * 0.04187 * 16 14 13 18 18 N 1.30458 * 108.02341 * 179.70349 * 17 16 14 19 19 N 1.39940 * 108.89286 * 0.41086 * 18 17 16 20 20 H 0.97000 * 125.74642 * 179.84768 * 19 18 17 21 21 C 1.34255 * 108.49160 * 359.58229 * 19 18 17 22 22 H 1.09000 * 109.47040 * 274.21012 * 1 2 3 23 23 H 1.08993 * 109.47309 * 34.20967 * 1 2 3 24 24 H 1.09003 * 109.47126 * 154.21114 * 1 2 3 25 25 H 0.97000 * 120.00307 * 179.97438 * 6 5 3 26 26 H 1.09004 * 109.46936 * 150.00004 * 11 2 1 27 27 H 1.09000 * 109.47211 * 29.99700 * 11 2 1 28 28 H 1.09004 * 109.46878 * 60.00572 * 12 11 2 29 29 H 1.08992 * 109.47647 * 300.00455 * 12 11 2 30 30 H 0.96994 * 120.00161 * 0.02562 * 13 12 11 31 31 H 1.07997 * 125.99305 * 0.02562 * 17 16 14 32 32 H 1.08000 * 126.29425 * 180.22478 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2690 1.0936 7 14 2.3367 4.0048 0.1687 8 1 2.4915 4.2332 -1.2905 9 1 1.4850 5.0734 0.7498 10 1 3.6720 4.0287 0.8179 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4418 13 7 3.1845 -2.9800 1.4412 14 6 3.5209 -3.5644 2.6082 15 8 3.2166 -3.0385 3.6616 16 6 4.2580 -4.8413 2.6076 17 6 4.6784 -5.5665 1.4704 18 7 5.3024 -6.6358 1.8815 19 7 5.3027 -6.6504 3.2808 20 1 5.6990 -7.3367 3.8403 21 6 4.6672 -5.5517 3.7183 22 1 -0.3633 0.0754 1.0249 23 1 -0.3633 0.8498 -0.5777 24 1 -0.3633 -0.9253 -0.4471 25 1 -0.0460 3.0775 1.4133 26 1 3.1499 -1.1382 -0.5144 27 1 1.6084 -2.0282 -0.5147 28 1 1.5001 -1.8415 1.9556 29 1 3.0416 -0.9516 1.9559 30 1 3.4269 -3.3997 0.6010 31 1 4.5166 -5.2825 0.4410 32 1 4.5055 -5.2747 4.7495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663146264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = 60.339178 kcal Electronic energy + Delta-G solvation = -16234.888138 eV Core-core repulsion = 13426.054518 eV Total energy + Delta-G solvation = -2808.833620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.44250 -38.79207 -35.96370 -34.05889 -32.05571 -31.24090 -30.39189 -27.93725 -25.83734 -23.91182 -22.13565 -22.07312 -20.56962 -19.84083 -18.57700 -16.72032 -15.99767 -15.48182 -15.26574 -14.74950 -14.66743 -14.46793 -13.62392 -13.49550 -13.12550 -12.95010 -12.30199 -12.22217 -11.33718 -11.16084 -10.82957 -10.80329 -10.57676 -10.24001 -10.06177 -9.97924 -9.87520 -9.58700 -9.00486 -8.55157 -8.46798 -6.78959 -5.71391 -3.18524 1.43651 2.06651 2.50503 3.41315 3.46266 3.47178 3.63765 3.67487 4.49424 4.54951 4.69070 5.09803 5.19152 5.43961 5.57571 5.69594 5.93440 6.02575 6.19368 6.33281 6.74620 6.77628 6.81278 6.86103 7.05527 7.26522 7.39899 7.74966 7.82909 7.93832 8.40254 8.63446 9.24181 9.86354 10.34479 11.33719 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045541 B = 0.004455 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.680390 B = 6283.755093 C = 6370.324924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.143 3.857 12 C 0.096 3.904 13 N -0.720 5.720 14 C 0.585 3.415 15 O -0.552 6.552 16 C -0.286 4.286 17 C 0.084 3.916 18 N -0.300 5.300 19 N -0.467 5.467 20 H 0.443 0.557 21 C 0.128 3.872 22 H 0.029 0.971 23 H 0.047 0.953 24 H -0.002 1.002 25 H 0.254 0.746 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.393 0.607 31 H 0.191 0.809 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 -16.351 1.491 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.015 3.985 12 C -0.029 4.029 13 N -0.370 5.370 14 C 0.371 3.629 15 O -0.431 6.431 16 C -0.301 4.301 17 C -0.104 4.104 18 N -0.121 5.121 19 N -0.173 5.173 20 H 0.287 0.713 21 C -0.025 4.025 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.016 0.984 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.226 0.774 31 H 0.208 0.792 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.741 -16.817 1.906 18.612 hybrid contribution 0.266 1.151 0.228 1.203 sum 8.007 -15.667 2.134 17.723 Atomic orbital electron populations 1.20846 0.82168 0.95724 0.99472 1.43917 1.02059 1.00358 1.85595 1.19187 0.98136 0.85260 1.36418 0.91246 1.25054 0.97638 0.98643 0.98113 1.70056 1.17788 1.27325 1.39938 0.86304 0.78576 0.83607 0.77846 1.21024 1.21600 1.20877 1.21002 0.96355 0.88888 0.92253 1.22506 0.95714 0.82668 1.02026 1.45957 1.58334 1.25185 1.07534 1.17274 0.78498 0.82918 0.84211 1.90784 1.55849 1.65207 1.31277 1.20512 1.15256 1.01595 0.92715 1.24135 0.94948 0.91427 0.99908 1.77136 1.23981 1.22376 0.88646 1.46211 1.45024 1.19968 1.06096 0.71264 1.23071 0.92320 0.86667 1.00412 0.95230 0.93465 0.98375 0.93596 0.93297 0.93948 0.92175 0.91295 0.77355 0.79178 0.79199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 9.01 59.85 0.54 4.55 16 2 N -0.60 -14.94 2.93 -181.11 -0.53 -15.47 16 3 C -0.26 -7.15 9.67 -15.06 -0.15 -7.29 16 4 H 0.07 1.85 7.84 -52.48 -0.41 1.43 16 5 C 0.00 0.12 5.13 -17.43 -0.09 0.03 16 6 N -0.91 -26.62 10.58 55.49 0.59 -26.04 16 7 Si 0.91 21.94 29.57 -169.99 -5.03 16.92 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.14 2.82 5.82 -4.04 -0.02 2.80 16 12 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 13 N -0.72 -11.01 5.55 -61.38 -0.34 -11.35 16 14 C 0.58 9.53 7.81 -12.52 -0.10 9.43 16 15 O -0.55 -11.34 16.90 5.27 0.09 -11.25 16 16 C -0.29 -3.57 6.13 -105.07 -0.64 -4.21 16 17 C 0.08 0.89 11.50 -16.98 -0.20 0.69 16 18 N -0.30 -3.25 12.63 30.86 0.39 -2.86 16 19 N -0.47 -3.92 7.29 30.85 0.22 -3.69 16 20 H 0.44 2.03 8.96 -182.72 -1.64 0.40 16 21 C 0.13 1.27 11.82 -16.56 -0.20 1.07 16 22 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 23 H 0.05 1.24 7.19 -51.93 -0.37 0.87 16 24 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 27 H 0.04 0.73 7.86 -51.93 -0.41 0.33 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.39 4.56 7.43 -40.82 -0.30 4.25 16 31 H 0.19 1.41 7.50 -52.49 -0.39 1.02 16 32 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 282.40 15.07 4.26 4.26 Total: -1.00 -34.85 282.40 -6.37 -41.21 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.14 Total: -0.65 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -0.88 Total: 8.93 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.33 Total: -59.41 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.85 -6.37 -41.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.552 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds