Wall clock time and date at job start Sun Mar 29 2020 21:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36937 * 119.99771 * 2 1 4 4 H 1.08004 * 119.99646 * 202.34721 * 3 2 1 5 5 C 1.38807 * 120.00035 * 22.34418 * 3 2 1 6 6 N 1.31615 * 120.00226 * 11.35150 * 5 3 2 7 7 Si 1.86806 * 119.99855 * 191.34321 * 5 3 2 8 8 H 1.48500 * 109.46770 * 60.00478 * 7 5 3 9 9 H 1.48497 * 109.46804 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47125 * 300.00386 * 7 5 3 11 11 C 1.46501 * 119.99715 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46803 * 269.99397 * 11 2 1 13 13 N 1.46501 * 109.46803 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99743 * 180.02562 * 13 12 11 15 15 O 1.21607 * 120.00266 * 0.02562 * 14 13 12 16 16 C 1.47431 * 119.99673 * 180.02562 * 14 13 12 17 17 C 1.41280 * 126.41588 * 0.04187 * 16 14 13 18 18 N 1.30458 * 108.02341 * 179.70349 * 17 16 14 19 19 N 1.39940 * 108.89286 * 0.41086 * 18 17 16 20 20 H 0.97000 * 125.74642 * 179.84768 * 19 18 17 21 21 C 1.34255 * 108.49160 * 359.58229 * 19 18 17 22 22 H 1.09000 * 109.47040 * 274.21012 * 1 2 3 23 23 H 1.08993 * 109.47309 * 34.20967 * 1 2 3 24 24 H 1.09003 * 109.47126 * 154.21114 * 1 2 3 25 25 H 0.97000 * 120.00307 * 179.97438 * 6 5 3 26 26 H 1.09004 * 109.46936 * 150.00004 * 11 2 1 27 27 H 1.09000 * 109.47211 * 29.99700 * 11 2 1 28 28 H 1.09004 * 109.46878 * 60.00572 * 12 11 2 29 29 H 1.08992 * 109.47647 * 300.00455 * 12 11 2 30 30 H 0.96994 * 120.00161 * 0.02562 * 13 12 11 31 31 H 1.07997 * 125.99305 * 0.02562 * 17 16 14 32 32 H 1.08000 * 126.29425 * 180.22478 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4570 6 7 0.3842 2.2690 1.0936 7 14 2.3367 4.0048 0.1687 8 1 2.4915 4.2332 -1.2905 9 1 1.4850 5.0734 0.7498 10 1 3.6720 4.0287 0.8179 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4418 13 7 3.1845 -2.9800 1.4412 14 6 3.5209 -3.5644 2.6082 15 8 3.2166 -3.0385 3.6616 16 6 4.2580 -4.8413 2.6076 17 6 4.6784 -5.5665 1.4704 18 7 5.3024 -6.6358 1.8815 19 7 5.3027 -6.6504 3.2808 20 1 5.6990 -7.3367 3.8403 21 6 4.6672 -5.5517 3.7183 22 1 -0.3633 0.0754 1.0249 23 1 -0.3633 0.8498 -0.5777 24 1 -0.3633 -0.9253 -0.4471 25 1 -0.0460 3.0775 1.4133 26 1 3.1499 -1.1382 -0.5144 27 1 1.6084 -2.0282 -0.5147 28 1 1.5001 -1.8415 1.9556 29 1 3.0416 -0.9516 1.9559 30 1 3.4269 -3.3997 0.6010 31 1 4.5166 -5.2825 0.4410 32 1 4.5055 -5.2747 4.7495 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663146264.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:03 Heat of formation + Delta-G solvation = 33.384567 kcal Electronic energy + Delta-G solvation = -16236.056978 eV Core-core repulsion = 13426.054518 eV Total energy + Delta-G solvation = -2810.002460 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.28383 -40.12116 -37.77475 -35.64619 -33.37252 -32.67589 -31.41937 -29.52102 -27.89068 -25.46169 -23.46901 -22.93191 -22.27229 -20.94619 -19.59469 -18.72233 -17.12427 -16.93261 -16.59750 -16.47609 -15.70864 -15.50035 -15.30489 -15.03632 -14.73610 -14.09204 -14.04046 -13.78526 -13.06915 -12.73993 -12.58507 -12.46971 -12.23188 -12.06954 -11.96105 -11.73063 -10.94072 -10.82640 -10.62660 -10.13999 -9.71077 -8.83039 -7.81970 -5.31365 0.56908 1.17744 1.49043 1.51098 1.57685 1.80160 2.36051 2.50766 2.56886 3.33734 3.66194 3.86274 3.95812 4.15185 4.30635 4.37739 4.43429 4.71005 4.79610 4.88571 5.12805 5.23228 5.35929 5.35991 5.55683 5.66561 5.75647 6.23359 6.34095 6.48773 6.74644 7.15923 7.39426 7.87093 8.29353 9.21720 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045541 B = 0.004455 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.680390 B = 6283.755093 C = 6370.324924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.274 1.274 9 H -0.296 1.296 10 H -0.278 1.278 11 C 0.146 3.854 12 C 0.118 3.882 13 N -0.706 5.706 14 C 0.584 3.416 15 O -0.604 6.604 16 C -0.317 4.317 17 C 0.092 3.908 18 N -0.319 5.319 19 N -0.449 5.449 20 H 0.460 0.540 21 C 0.144 3.856 22 H -0.002 1.002 23 H 0.021 0.979 24 H 0.036 0.964 25 H 0.248 0.752 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.415 0.585 31 H 0.218 0.782 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 -18.069 0.511 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.199 1.199 9 H -0.222 1.222 10 H -0.203 1.203 11 C 0.019 3.981 12 C -0.009 4.009 13 N -0.358 5.358 14 C 0.373 3.627 15 O -0.486 6.486 16 C -0.332 4.332 17 C -0.096 4.096 18 N -0.140 5.140 19 N -0.156 5.156 20 H 0.308 0.692 21 C -0.010 4.010 22 H 0.016 0.984 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.252 0.748 31 H 0.234 0.766 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.312 -18.624 0.881 20.841 hybrid contribution -0.148 1.534 0.562 1.640 sum 9.164 -17.090 1.443 19.446 Atomic orbital electron populations 1.20602 0.82471 0.96478 0.97468 1.44173 1.02360 1.01638 1.85652 1.19585 0.98410 0.86447 1.35320 0.90550 1.25845 0.98398 1.02101 0.98534 1.70241 1.19315 1.27598 1.41513 0.85297 0.77525 0.79315 0.78034 1.19925 1.22248 1.20345 1.21157 0.97210 0.87536 0.92227 1.21903 0.94160 0.83642 1.01201 1.45628 1.57703 1.23700 1.08720 1.17780 0.77801 0.83733 0.83340 1.90756 1.58005 1.66851 1.33008 1.20251 1.17367 1.00837 0.94726 1.24522 0.93792 0.90583 1.00673 1.77126 1.24512 1.22649 0.89703 1.46232 1.43886 1.19778 1.05693 0.69160 1.23372 0.90631 0.86198 1.00820 0.98358 0.95990 0.94535 0.94310 0.91574 0.90575 0.94825 0.95205 0.74806 0.76554 0.77307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.67 9.01 127.77 1.15 9.82 16 2 N -0.62 -30.57 2.93 -726.92 -2.13 -32.70 16 3 C -0.27 -14.65 9.67 84.03 0.81 -13.83 16 4 H 0.08 3.99 7.84 -2.91 -0.02 3.97 16 5 C -0.05 -3.05 5.13 84.86 0.44 -2.61 16 6 N -0.94 -56.71 10.58 21.65 0.23 -56.48 16 7 Si 0.97 45.45 29.57 68.60 2.03 47.48 16 8 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 9 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 C 0.15 5.48 5.82 86.38 0.50 5.98 16 12 C 0.12 4.63 6.00 86.38 0.52 5.14 16 13 N -0.71 -20.72 5.55 -466.36 -2.59 -23.31 16 14 C 0.58 18.68 7.81 86.66 0.68 19.36 16 15 O -0.60 -25.20 16.90 -4.05 -0.07 -25.27 16 16 C -0.32 -7.30 6.13 -20.15 -0.12 -7.43 16 17 C 0.09 1.68 11.50 85.64 0.99 2.67 16 18 N -0.32 -5.98 12.63 -56.28 -0.71 -6.69 16 19 N -0.45 -6.23 7.29 -56.32 -0.41 -6.64 16 20 H 0.46 2.82 8.96 -213.42 -1.91 0.91 16 21 C 0.14 2.53 11.82 84.28 1.00 3.53 16 22 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 23 H 0.02 1.16 7.19 -2.39 -0.02 1.14 16 24 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 25 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.07 2.28 8.03 -2.38 -0.02 2.26 16 27 H 0.08 2.38 7.86 -2.39 -0.02 2.36 16 28 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.41 8.49 7.43 -92.71 -0.69 7.81 16 31 H 0.22 2.43 7.50 -2.91 -0.02 2.41 16 32 H 0.21 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -77.03 282.40 0.86 -76.17 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -1.45 Total: 4.82 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 5.96 Total: 22.62 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.61 Total: -125.82 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.07 Total: -25.27 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.03 0.86 -76.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663146264.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.554 kcal (2) G-P(sol) polarization free energy of solvation -77.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds