Wall clock time and date at job start Sun Mar 29 2020 21:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 119.99908 * 2 1 4 4 C 1.53001 * 109.46884 * 269.71851 * 3 2 1 5 5 N 1.46493 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00643 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99493 * 0.02562 * 6 5 4 8 8 C 1.38803 * 120.00645 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00130 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47136 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46839 * 120.00283 * 10 8 6 13 13 H 1.48499 * 109.47047 * 239.99871 * 10 8 6 14 14 C 1.34776 * 120.00107 * 179.71915 * 2 1 3 15 15 O 1.21573 * 120.00234 * 176.33858 * 14 2 1 16 16 C 1.47711 * 119.99843 * 356.33729 * 14 2 1 17 17 C 1.41504 * 126.51996 * 185.82065 * 16 14 2 18 18 C 1.35359 * 105.50642 * 179.89944 * 17 16 14 19 19 N 1.35038 * 107.22665 * 0.36260 * 18 17 16 20 20 H 0.97001 * 124.88266 * 179.76600 * 19 18 17 21 21 N 1.28465 * 110.23181 * 359.75975 * 19 18 17 22 22 H 1.09012 * 109.47065 * 95.66294 * 1 2 3 23 23 H 1.09000 * 109.47465 * 215.65564 * 1 2 3 24 24 H 1.08991 * 109.47436 * 335.66549 * 1 2 3 25 25 H 1.08994 * 109.47176 * 29.71885 * 3 2 1 26 26 H 1.09004 * 109.46733 * 149.72434 * 3 2 1 27 27 H 1.09003 * 109.47415 * 300.00572 * 4 3 2 28 28 H 1.09002 * 109.47327 * 59.99843 * 4 3 2 29 29 H 0.97003 * 120.00188 * 0.02562 * 5 4 3 30 30 H 0.97006 * 120.00445 * 179.97438 * 9 8 6 31 31 H 1.08006 * 127.24316 * 0.02562 * 17 16 14 32 32 H 1.07997 * 126.38949 * 180.15414 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4585 1.7068 -1.4425 5 7 3.1915 2.9752 -1.4426 6 6 3.5395 3.5650 -2.6285 7 1 3.2731 3.0952 -3.5638 8 6 4.2335 4.7670 -2.6286 9 7 4.5577 5.3399 -1.4888 10 14 4.7075 5.5718 -4.2464 11 1 4.2293 4.7336 -5.3750 12 1 4.0847 6.9173 -4.3310 13 1 6.1847 5.7047 -4.3190 14 6 2.1388 -1.1672 0.0057 15 8 3.3527 -1.1686 -0.0615 16 6 1.4025 -2.4447 0.0937 17 6 1.9679 -3.7351 0.2256 18 6 0.9175 -4.5878 0.2682 19 7 -0.2051 -3.8452 0.1593 20 1 -1.1075 -4.2008 0.1574 21 7 0.0941 -2.5999 0.0585 22 1 -0.3634 -0.1014 -1.0228 23 1 -0.3634 -0.8350 0.5990 24 1 -0.3634 0.9363 0.4234 25 1 1.6062 2.0296 0.5094 26 1 3.1477 1.1396 0.5181 27 1 3.0497 0.9459 -1.9520 28 1 1.5083 1.8359 -1.9607 29 1 3.4311 3.3970 -0.6026 30 1 5.0431 6.1798 -1.4888 31 1 3.0168 -3.9865 0.2825 32 1 0.9679 -5.6620 0.3672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663825300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:50 Heat of formation + Delta-G solvation = 69.332423 kcal Electronic energy + Delta-G solvation = -16378.074118 eV Core-core repulsion = 13569.630475 eV Total energy + Delta-G solvation = -2808.443644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.79938 -39.31688 -35.80214 -34.28145 -32.16830 -31.29836 -30.76275 -28.12516 -26.44626 -24.43800 -22.81660 -21.91346 -21.18129 -19.28647 -18.41456 -17.09474 -16.79067 -16.04034 -15.55143 -14.87886 -14.33594 -14.00418 -13.85983 -13.31083 -13.25388 -13.13496 -12.75390 -12.64782 -12.36401 -11.17840 -10.93976 -10.83409 -10.74256 -10.57593 -10.02807 -9.90026 -9.65125 -9.56458 -9.39137 -8.80174 -8.36606 -6.85001 -5.69110 -2.97801 1.49974 1.99635 2.64143 3.23348 3.49371 3.50118 3.54831 3.57444 4.31551 4.63111 4.68357 4.95053 5.37007 5.44708 5.55598 5.61274 5.67826 5.74603 5.93831 5.98241 6.13214 6.20475 6.24035 6.65890 6.77845 6.86767 7.03166 7.54047 7.69952 7.78311 8.36932 8.49770 9.60521 10.17363 10.52801 11.54056 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.054413 B = 0.004360 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.459298 B = 6420.880165 C = 6506.161814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.109 3.891 4 C 0.142 3.858 5 N -0.731 5.731 6 C -0.235 4.235 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.593 3.407 15 O -0.525 6.525 16 C -0.002 4.002 17 C -0.180 4.180 18 C -0.017 4.017 19 N -0.390 5.390 20 H 0.444 0.556 21 N -0.258 5.258 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.025 0.975 28 H 0.019 0.981 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.163 0.837 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -20.218 6.105 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.331 5.331 3 C -0.013 4.013 4 C 0.014 3.986 5 N -0.376 5.376 6 C -0.366 4.366 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.379 3.621 15 O -0.399 6.399 16 C -0.163 4.163 17 C -0.208 4.208 18 C -0.161 4.161 19 N -0.104 5.104 20 H 0.288 0.712 21 N -0.095 5.095 22 H 0.073 0.927 23 H 0.110 0.890 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.217 0.783 30 H 0.064 0.936 31 H 0.181 0.819 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -12.935 -19.561 5.796 24.157 hybrid contribution 0.493 -0.075 -0.598 0.779 sum -12.441 -19.636 5.198 23.820 Atomic orbital electron populations 1.22126 0.78860 1.03276 1.02521 1.47647 1.07516 1.05812 1.72080 1.21780 0.97416 0.82855 0.99297 1.20920 0.95148 0.89378 0.93197 1.42223 1.67035 1.21709 1.06584 1.19271 1.29064 1.02270 0.86029 0.91147 1.24737 1.01387 0.98059 0.96899 1.69674 1.45280 1.19495 1.23867 0.86092 0.77918 0.79091 0.82975 1.20573 1.21896 1.21831 1.16991 0.86249 0.81689 0.77188 1.90835 1.12772 1.86418 1.49904 1.22108 0.89546 0.95655 1.09000 1.21839 1.00671 0.90577 1.07701 1.22927 0.86074 0.99292 1.07831 1.43525 1.09805 1.04053 1.52987 0.71178 1.73755 1.16582 0.99670 1.19477 0.92688 0.89020 0.91328 0.90260 0.89657 0.95753 0.96343 0.78270 0.93591 0.81930 0.79927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 9.71 59.84 0.58 1.54 16 2 N -0.60 -9.78 2.87 -182.75 -0.53 -10.30 16 3 C 0.11 2.02 5.53 -4.04 -0.02 2.00 16 4 C 0.14 3.21 6.58 -4.05 -0.03 3.18 16 5 N -0.73 -19.87 5.60 -59.91 -0.34 -20.21 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -29.22 13.06 55.49 0.72 -28.49 16 10 Si 0.91 23.24 29.55 -169.99 -5.02 18.21 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 13 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 14 C 0.59 10.35 7.67 -12.39 -0.10 10.25 16 15 O -0.53 -11.03 16.55 5.30 0.09 -10.95 16 16 C 0.00 -0.03 6.83 -82.76 -0.56 -0.59 16 17 C -0.18 -2.01 10.81 -39.36 -0.43 -2.44 16 18 C -0.02 -0.12 12.02 -17.17 -0.21 -0.33 16 19 N -0.39 -2.82 6.83 30.47 0.21 -2.61 16 20 H 0.44 1.36 8.96 -190.44 -1.71 -0.35 16 21 N -0.26 -2.89 8.74 33.42 0.29 -2.60 16 22 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 23 H 0.09 1.05 5.29 -51.93 -0.27 0.78 16 24 H 0.07 0.77 7.83 -51.93 -0.41 0.37 16 25 H 0.08 1.34 7.85 -51.93 -0.41 0.93 16 26 H 0.09 1.71 7.48 -51.93 -0.39 1.32 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 30 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.16 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -36.68 280.93 -6.50 -43.18 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.16 Total: 3.59 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.01 Total: 5.94 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 0.36 Total: -64.22 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -36.68 -6.50 -43.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663825300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.515 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds