Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 119.99908 * 2 1 4 4 C 1.53001 * 109.46884 * 269.71851 * 3 2 1 5 5 N 1.46493 * 109.47275 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00643 * 179.97438 * 5 4 3 7 7 H 1.08002 * 119.99493 * 0.02562 * 6 5 4 8 8 C 1.38803 * 120.00645 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00130 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47136 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46839 * 120.00283 * 10 8 6 13 13 H 1.48499 * 109.47047 * 239.99871 * 10 8 6 14 14 C 1.34776 * 120.00107 * 179.71915 * 2 1 3 15 15 O 1.21573 * 120.00234 * 176.33858 * 14 2 1 16 16 C 1.47711 * 119.99843 * 356.33729 * 14 2 1 17 17 C 1.41504 * 126.51996 * 185.82065 * 16 14 2 18 18 C 1.35359 * 105.50642 * 179.89944 * 17 16 14 19 19 N 1.35038 * 107.22665 * 0.36260 * 18 17 16 20 20 H 0.97001 * 124.88266 * 179.76600 * 19 18 17 21 21 N 1.28465 * 110.23181 * 359.75975 * 19 18 17 22 22 H 1.09012 * 109.47065 * 95.66294 * 1 2 3 23 23 H 1.09000 * 109.47465 * 215.65564 * 1 2 3 24 24 H 1.08991 * 109.47436 * 335.66549 * 1 2 3 25 25 H 1.08994 * 109.47176 * 29.71885 * 3 2 1 26 26 H 1.09004 * 109.46733 * 149.72434 * 3 2 1 27 27 H 1.09003 * 109.47415 * 300.00572 * 4 3 2 28 28 H 1.09002 * 109.47327 * 59.99843 * 4 3 2 29 29 H 0.97003 * 120.00188 * 0.02562 * 5 4 3 30 30 H 0.97006 * 120.00445 * 179.97438 * 9 8 6 31 31 H 1.08006 * 127.24316 * 0.02562 * 17 16 14 32 32 H 1.07997 * 126.38949 * 180.15414 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4585 1.7068 -1.4425 5 7 3.1915 2.9752 -1.4426 6 6 3.5395 3.5650 -2.6285 7 1 3.2731 3.0952 -3.5638 8 6 4.2335 4.7670 -2.6286 9 7 4.5577 5.3399 -1.4888 10 14 4.7075 5.5718 -4.2464 11 1 4.2293 4.7336 -5.3750 12 1 4.0847 6.9173 -4.3310 13 1 6.1847 5.7047 -4.3190 14 6 2.1388 -1.1672 0.0057 15 8 3.3527 -1.1686 -0.0615 16 6 1.4025 -2.4447 0.0937 17 6 1.9679 -3.7351 0.2256 18 6 0.9175 -4.5878 0.2682 19 7 -0.2051 -3.8452 0.1593 20 1 -1.1075 -4.2008 0.1574 21 7 0.0941 -2.5999 0.0585 22 1 -0.3634 -0.1014 -1.0228 23 1 -0.3634 -0.8350 0.5990 24 1 -0.3634 0.9363 0.4234 25 1 1.6062 2.0296 0.5094 26 1 3.1477 1.1396 0.5181 27 1 3.0497 0.9459 -1.9520 28 1 1.5083 1.8359 -1.9607 29 1 3.4311 3.3970 -0.6026 30 1 5.0431 6.1798 -1.4888 31 1 3.0168 -3.9865 0.2825 32 1 0.9679 -5.6620 0.3672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663825300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = 41.007142 kcal Electronic energy + Delta-G solvation = -16379.302395 eV Core-core repulsion = 13569.630475 eV Total energy + Delta-G solvation = -2809.671920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.117 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.58626 -40.65815 -37.41401 -36.12247 -33.61569 -32.70293 -31.70752 -29.82043 -27.64622 -26.19176 -24.38127 -23.02289 -22.49076 -20.37501 -19.30452 -19.17244 -17.94989 -17.29358 -16.80257 -16.57285 -15.90995 -15.47589 -15.14182 -15.01898 -14.65075 -14.49636 -14.01423 -13.89565 -13.40651 -13.09495 -12.89615 -12.74247 -12.34826 -12.09525 -11.88380 -11.65571 -11.22811 -10.99804 -10.42057 -10.14160 -9.72056 -9.07824 -7.98294 -5.29525 0.51002 1.25272 1.46049 1.48406 1.58551 1.78127 2.25520 2.31216 2.55957 3.34122 3.35883 3.89641 4.05096 4.13453 4.22499 4.25009 4.41565 4.53344 4.73432 4.79815 4.80271 4.97965 5.03332 5.08171 5.33476 5.43107 5.54563 6.17167 6.23319 6.35891 6.85437 7.10272 7.29329 7.99721 8.26858 9.25338 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.054413 B = 0.004360 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.459298 B = 6420.880165 C = 6506.161814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.598 5.598 3 C 0.122 3.878 4 C 0.149 3.851 5 N -0.742 5.742 6 C -0.253 4.253 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.967 5.967 10 Si 0.980 3.020 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.291 1.291 14 C 0.585 3.415 15 O -0.577 6.577 16 C -0.038 4.038 17 C -0.212 4.212 18 C 0.021 3.979 19 N -0.366 5.366 20 H 0.466 0.534 21 N -0.263 5.263 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.101 0.899 26 H 0.064 0.936 27 H -0.001 1.001 28 H 0.028 0.972 29 H 0.377 0.623 30 H 0.254 0.746 31 H 0.157 0.843 32 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 -21.926 5.754 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C -0.001 4.001 4 C 0.022 3.978 5 N -0.386 5.386 6 C -0.385 4.385 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.808 3.192 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.218 1.218 14 C 0.373 3.627 15 O -0.455 6.455 16 C -0.197 4.197 17 C -0.241 4.241 18 C -0.124 4.124 19 N -0.083 5.083 20 H 0.315 0.685 21 N -0.101 5.101 22 H 0.075 0.925 23 H 0.125 0.875 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.046 0.954 29 H 0.209 0.791 30 H 0.063 0.937 31 H 0.175 0.825 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -15.047 -21.300 5.442 26.641 hybrid contribution 1.032 0.314 -0.469 1.176 sum -14.015 -20.986 4.973 25.721 Atomic orbital electron populations 1.22326 0.76336 1.04878 1.03132 1.47737 1.08943 1.04712 1.71601 1.21464 0.97504 0.84666 0.96482 1.20930 0.94226 0.86908 0.95775 1.42384 1.67528 1.22942 1.05711 1.19632 1.29213 1.02726 0.86884 0.91025 1.25631 1.01507 0.98678 1.00600 1.69826 1.45992 1.19838 1.26090 0.84996 0.77247 0.78057 0.78948 1.19250 1.21264 1.21776 1.17599 0.86008 0.83083 0.75992 1.90786 1.15063 1.87362 1.52312 1.21685 0.90746 0.94757 1.12505 1.22038 1.01837 0.90442 1.09749 1.23529 0.84204 1.00847 1.03830 1.43653 1.11241 1.02965 1.50441 0.68541 1.73612 1.15114 1.01730 1.19652 0.92475 0.87529 0.89688 0.88055 0.91732 0.98296 0.95410 0.79109 0.93702 0.82502 0.74817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.80 9.71 127.77 1.24 3.04 16 2 N -0.60 -19.78 2.87 -850.35 -2.44 -22.23 16 3 C 0.12 4.66 5.53 86.38 0.48 5.14 16 4 C 0.15 6.93 6.58 86.38 0.57 7.50 16 5 N -0.74 -41.34 5.60 -343.46 -1.92 -43.26 16 6 C -0.25 -15.19 9.99 84.03 0.84 -14.35 16 7 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 8 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 9 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 10 Si 0.98 47.92 29.55 68.60 2.03 49.94 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 14 C 0.59 21.13 7.67 86.75 0.67 21.80 16 15 O -0.58 -25.80 16.55 -3.95 -0.07 -25.86 16 16 C -0.04 -1.05 6.83 42.46 0.29 -0.76 16 17 C -0.21 -4.52 10.81 22.41 0.24 -4.28 16 18 C 0.02 0.22 12.02 83.53 1.00 1.22 16 19 N -0.37 -3.92 6.83 -57.51 -0.39 -4.32 16 20 H 0.47 0.72 8.96 -219.99 -1.97 -1.25 16 21 N -0.26 -5.33 8.74 -48.17 -0.42 -5.75 16 22 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.11 2.26 5.29 -2.39 -0.01 2.25 16 24 H 0.08 1.75 7.83 -2.39 -0.02 1.73 16 25 H 0.10 3.39 7.85 -2.39 -0.02 3.37 16 26 H 0.06 2.73 7.48 -2.39 -0.02 2.71 16 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.38 21.71 7.67 -92.71 -0.71 21.00 16 30 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 31 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 32 H 0.24 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: -1.00 -82.04 280.93 1.33 -80.71 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -1.53 Total: 16.24 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 5.80 Total: 15.47 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -4.90 Total: -136.50 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.07 Total: -25.86 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Total: -82.04 1.33 -80.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663825300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.716 kcal (2) G-P(sol) polarization free energy of solvation -82.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds