Wall clock time and date at job start Sun Mar 29 2020 22:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48507 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 300.00251 * 3 2 1 6 6 H 1.48498 * 109.47092 * 60.00287 * 3 2 1 7 7 C 1.38808 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99781 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47106 * 180.02562 * 10 9 7 12 12 C 1.30996 * 120.00080 * 124.99785 * 11 10 9 13 13 C 1.50701 * 120.00080 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47174 * 125.00078 * 13 12 11 15 15 C 1.34777 * 120.00271 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.53003 * 117.49371 * 243.62054 * 18 17 15 20 20 C 1.53001 * 117.49608 * 175.00128 * 18 17 15 21 21 H 0.96997 * 119.99626 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00312 * 0.02562 * 9 7 2 23 23 H 1.08999 * 109.47016 * 60.00417 * 10 9 7 24 24 H 1.09003 * 109.47250 * 300.00230 * 10 9 7 25 25 H 1.08005 * 119.99573 * 305.00288 * 11 10 9 26 26 H 1.07995 * 120.00250 * 0.02562 * 12 11 10 27 27 H 1.09002 * 109.47060 * 5.00208 * 13 12 11 28 28 H 1.09001 * 109.47380 * 245.00120 * 13 12 11 29 29 H 0.97005 * 120.00266 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 31 31 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 32 32 H 1.08995 * 115.55630 * 29.32739 * 18 17 15 33 33 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 35 35 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 36 36 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1481 -5.7227 -0.9307 13 6 0.1684 -6.8678 -0.9316 14 7 -0.5071 -6.9315 -2.2300 15 6 -1.4320 -7.8839 -2.4625 16 8 -1.7053 -8.6879 -1.5967 17 6 -2.1264 -7.9497 -3.7984 18 6 -3.1211 -9.1122 -3.7993 19 6 -2.8679 -10.2577 -4.7815 20 6 -4.0149 -9.2762 -5.0302 21 1 -0.4849 0.8401 0.0004 22 1 0.3556 -2.3880 -0.0005 23 1 2.6847 -3.7145 0.8895 24 1 2.6848 -3.7145 -0.8905 25 1 0.3198 -4.8641 0.7647 26 1 1.9072 -5.6609 -1.6963 27 1 -0.5703 -6.7147 -0.1449 28 1 0.7011 -7.8019 -0.7531 29 1 -0.2882 -6.2886 -2.9227 30 1 -1.3875 -8.1027 -4.5849 31 1 -2.6593 -7.0158 -3.9772 32 1 -3.5488 -9.3658 -2.8294 33 1 -1.9925 -10.1834 -5.4267 34 1 -3.1290 -11.2653 -4.4577 35 1 -5.0306 -9.6380 -4.8700 36 1 -3.8947 -8.5556 -5.8391 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699223578.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:07 Heat of formation + Delta-G solvation = 5.015051 kcal Electronic energy + Delta-G solvation = -15655.647507 eV Core-core repulsion = 12947.955197 eV Total energy + Delta-G solvation = -2707.692311 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.84529 -37.38791 -36.20333 -34.68400 -32.86171 -30.83507 -29.67466 -26.88614 -24.13612 -22.62760 -22.06091 -21.26339 -20.31029 -19.39070 -17.36195 -17.10714 -16.15762 -15.69811 -15.32291 -14.69850 -14.30833 -14.04833 -13.87785 -13.39171 -13.23713 -13.04126 -12.47716 -12.00519 -11.85678 -11.76903 -11.66242 -11.05623 -10.85789 -10.65237 -10.59921 -10.27636 -10.07291 -9.93968 -9.82491 -9.24578 -9.00327 -8.72786 -6.97262 -5.80422 -3.10090 2.26818 2.60793 3.30278 3.41096 3.46694 3.49039 3.60730 4.44400 4.55759 4.57533 4.67920 4.87951 4.97948 5.18784 5.24810 5.32528 5.38367 5.44335 5.52890 5.61296 5.64930 5.80745 5.85470 5.98733 6.07272 6.11507 6.35917 6.45641 6.55380 6.88905 7.12975 7.48278 7.66458 8.18771 8.37916 9.49293 10.05475 10.40788 11.42362 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038965 B = 0.003258 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.421053 B = 8591.258949 C = 9057.074177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.202 4.202 13 C 0.155 3.845 14 N -0.726 5.726 15 C 0.513 3.487 16 O -0.544 6.544 17 C -0.112 4.112 18 C -0.140 4.140 19 C -0.180 4.180 20 C -0.181 4.181 21 H 0.255 0.745 22 H 0.385 0.615 23 H 0.031 0.969 24 H 0.026 0.974 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.404 0.596 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -17.413 -9.288 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.377 5.377 15 C 0.300 3.700 16 O -0.422 6.422 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.217 4.217 20 C -0.218 4.218 21 H 0.065 0.935 22 H 0.219 0.781 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.127 0.873 26 H 0.132 0.868 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.238 0.762 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.708 -17.870 -8.647 20.195 hybrid contribution 0.288 1.312 -0.322 1.381 sum -3.420 -16.558 -8.969 19.139 Atomic orbital electron populations 1.69680 1.05142 1.25639 1.57612 1.24774 0.95572 0.97788 1.02878 0.86088 0.78766 0.83923 0.77229 1.20505 1.21808 1.21783 1.19290 0.91109 0.84003 1.42876 0.91010 1.42311 1.05963 0.99584 1.89582 1.19828 0.92617 0.84579 0.98440 1.23338 0.98267 0.94001 0.97018 1.22695 1.00979 0.97061 1.01369 1.20305 0.93873 0.97529 0.85095 1.46092 1.41314 1.33245 1.17078 1.20589 0.79324 0.80409 0.89710 1.90680 1.64049 1.40496 1.46954 1.21235 0.98447 1.00058 0.95430 1.22056 1.00633 0.97132 0.95982 1.23033 1.00270 0.95408 1.02941 1.23005 0.95970 1.03067 0.99783 0.93488 0.78135 0.95125 0.95673 0.87275 0.86778 0.91277 0.91199 0.76214 0.88797 0.88261 0.86390 0.88868 0.88818 0.88695 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.60 5.59 -61.08 -0.34 -18.94 16 10 C 0.17 3.44 6.70 -5.19 -0.03 3.41 16 11 C -0.11 -1.73 9.24 -36.02 -0.33 -2.06 16 12 C -0.20 -2.73 9.24 -36.02 -0.33 -3.07 16 13 C 0.15 1.98 6.11 -5.20 -0.03 1.95 16 14 N -0.73 -8.34 5.55 -61.47 -0.34 -8.68 16 15 C 0.51 6.35 7.83 -10.98 -0.09 6.26 16 16 O -0.54 -8.81 15.56 5.56 0.09 -8.72 16 17 C -0.11 -0.99 5.98 -27.88 -0.17 -1.16 16 18 C -0.14 -1.32 5.41 -90.62 -0.49 -1.81 16 19 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 20 C -0.18 -1.37 10.25 -26.73 -0.27 -1.64 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 22 H 0.39 10.32 7.66 -40.82 -0.31 10.00 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.03 0.50 7.79 -51.93 -0.40 0.09 16 25 H 0.11 1.75 7.84 -52.48 -0.41 1.34 16 26 H 0.11 1.45 7.84 -52.49 -0.41 1.04 16 27 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.40 3.82 8.46 -40.82 -0.35 3.47 16 30 H 0.09 0.65 7.88 -51.93 -0.41 0.24 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 1.35 7.31 -51.93 -0.38 0.97 16 33 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -32.51 312.66 -8.03 -40.54 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.58 Total: 8.58 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.27 Total: -7.28 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.04 Total: -55.09 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.51 -8.03 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699223578.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.554 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds