Wall clock time and date at job start Sun Mar 29 2020 22:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48507 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 300.00251 * 3 2 1 6 6 H 1.48498 * 109.47092 * 60.00287 * 3 2 1 7 7 C 1.38808 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99781 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47106 * 180.02562 * 10 9 7 12 12 C 1.30996 * 120.00080 * 124.99785 * 11 10 9 13 13 C 1.50701 * 120.00080 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47174 * 125.00078 * 13 12 11 15 15 C 1.34777 * 120.00271 * 179.97438 * 14 13 12 16 16 O 1.21278 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.46912 * 180.02562 * 17 15 14 19 19 C 1.53003 * 117.49371 * 243.62054 * 18 17 15 20 20 C 1.53001 * 117.49608 * 175.00128 * 18 17 15 21 21 H 0.96997 * 119.99626 * 359.97438 * 1 2 3 22 22 H 0.96996 * 120.00312 * 0.02562 * 9 7 2 23 23 H 1.08999 * 109.47016 * 60.00417 * 10 9 7 24 24 H 1.09003 * 109.47250 * 300.00230 * 10 9 7 25 25 H 1.08005 * 119.99573 * 305.00288 * 11 10 9 26 26 H 1.07995 * 120.00250 * 0.02562 * 12 11 10 27 27 H 1.09002 * 109.47060 * 5.00208 * 13 12 11 28 28 H 1.09001 * 109.47380 * 245.00120 * 13 12 11 29 29 H 0.97005 * 120.00266 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 31 31 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 32 32 H 1.08995 * 115.55630 * 29.32739 * 18 17 15 33 33 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 35 35 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 36 36 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 1.1481 -5.7227 -0.9307 13 6 0.1684 -6.8678 -0.9316 14 7 -0.5071 -6.9315 -2.2300 15 6 -1.4320 -7.8839 -2.4625 16 8 -1.7053 -8.6879 -1.5967 17 6 -2.1264 -7.9497 -3.7984 18 6 -3.1211 -9.1122 -3.7993 19 6 -2.8679 -10.2577 -4.7815 20 6 -4.0149 -9.2762 -5.0302 21 1 -0.4849 0.8401 0.0004 22 1 0.3556 -2.3880 -0.0005 23 1 2.6847 -3.7145 0.8895 24 1 2.6848 -3.7145 -0.8905 25 1 0.3198 -4.8641 0.7647 26 1 1.9072 -5.6609 -1.6963 27 1 -0.5703 -6.7147 -0.1449 28 1 0.7011 -7.8019 -0.7531 29 1 -0.2882 -6.2886 -2.9227 30 1 -1.3875 -8.1027 -4.5849 31 1 -2.6593 -7.0158 -3.9772 32 1 -3.5488 -9.3658 -2.8294 33 1 -1.9925 -10.1834 -5.4267 34 1 -3.1290 -11.2653 -4.4577 35 1 -5.0306 -9.6380 -4.8700 36 1 -3.8947 -8.5556 -5.8391 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699223578.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:06 Heat of formation + Delta-G solvation = -16.829826 kcal Electronic energy + Delta-G solvation = -15656.594772 eV Core-core repulsion = 12947.955197 eV Total energy + Delta-G solvation = -2708.639576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81988 -38.14925 -37.54564 -36.18226 -34.40898 -32.52366 -30.67898 -28.31549 -25.82556 -23.70172 -23.20894 -22.17425 -21.25431 -20.57273 -19.13048 -18.25660 -17.17006 -16.72799 -16.62590 -16.17740 -15.48026 -15.26042 -15.13160 -14.95039 -14.41621 -14.36251 -13.56183 -13.45928 -13.18460 -12.87798 -12.75982 -12.39038 -12.30876 -12.15115 -11.99459 -11.78220 -11.31249 -11.10677 -11.00009 -10.81347 -10.32597 -9.96089 -9.02194 -7.96791 -5.26840 1.05949 1.48420 1.49217 1.59526 1.65199 2.37695 2.56684 2.95161 3.37244 3.72341 3.78545 3.80681 4.06048 4.09473 4.19106 4.22940 4.44573 4.55013 4.64214 4.68729 4.73598 4.81868 4.82767 4.92175 5.00060 5.06344 5.28519 5.31597 5.42521 5.47419 5.65667 5.83202 6.25539 6.56821 7.25435 7.31500 8.05376 8.29391 9.26931 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.038965 B = 0.003258 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.421053 B = 8591.258949 C = 9057.074177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.160 4.160 13 C 0.156 3.844 14 N -0.719 5.719 15 C 0.509 3.491 16 O -0.588 6.588 17 C -0.103 4.103 18 C -0.162 4.162 19 C -0.180 4.180 20 C -0.167 4.167 21 H 0.252 0.748 22 H 0.374 0.626 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.106 0.894 26 H 0.132 0.868 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.416 0.584 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 -17.705 -10.984 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.379 4.379 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.048 3.952 11 C -0.153 4.153 12 C -0.179 4.179 13 C 0.033 3.967 14 N -0.371 5.371 15 C 0.298 3.702 16 O -0.469 6.469 17 C -0.142 4.142 18 C -0.181 4.181 19 C -0.217 4.217 20 C -0.204 4.204 21 H 0.061 0.939 22 H 0.206 0.794 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.124 0.876 26 H 0.150 0.850 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.252 0.748 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.768 -18.178 -10.363 21.107 hybrid contribution 0.025 1.267 0.191 1.282 sum -2.743 -16.911 -10.172 19.925 Atomic orbital electron populations 1.69835 1.06697 1.26134 1.59373 1.25630 0.96463 1.01284 1.03516 0.85027 0.78245 0.79477 0.76710 1.18885 1.21838 1.22061 1.19710 0.91638 0.85188 1.41403 0.90353 1.42551 1.05722 1.00969 1.89536 1.19911 0.93138 0.83648 0.98516 1.23007 0.98871 0.94374 0.99041 1.22779 1.00003 0.95401 0.99712 1.20201 0.93552 0.97338 0.85638 1.46018 1.40936 1.33377 1.16768 1.21255 0.78898 0.79537 0.90556 1.90665 1.65372 1.42219 1.48637 1.21263 0.98665 1.00566 0.93712 1.21994 1.02102 0.98466 0.95530 1.23134 1.01121 0.95072 1.02360 1.23091 0.95880 1.02741 0.98711 0.93923 0.79409 0.95230 0.94780 0.87621 0.85044 0.92597 0.90511 0.74763 0.86176 0.86623 0.89229 0.87563 0.89055 0.88376 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.98 45.71 29.55 68.60 2.03 47.74 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -38.00 5.59 -347.17 -1.94 -39.94 16 10 C 0.17 6.80 6.70 85.63 0.57 7.37 16 11 C -0.13 -4.22 9.24 25.65 0.24 -3.98 16 12 C -0.16 -4.01 9.24 25.65 0.24 -3.77 16 13 C 0.16 3.77 6.11 85.63 0.52 4.29 16 14 N -0.72 -15.21 5.55 -466.79 -2.59 -17.80 16 15 C 0.51 12.03 7.83 87.66 0.69 12.71 16 16 O -0.59 -19.14 15.56 -3.02 -0.05 -19.18 16 17 C -0.10 -1.60 5.98 29.85 0.18 -1.42 16 18 C -0.16 -2.91 5.41 -10.79 -0.06 -2.97 16 19 C -0.18 -2.61 10.18 30.60 0.31 -2.29 16 20 C -0.17 -2.18 10.25 30.60 0.31 -1.87 16 21 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 22 H 0.37 20.36 7.66 -92.71 -0.71 19.65 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.28 7.79 -2.39 -0.02 1.27 16 25 H 0.11 3.41 7.84 -2.91 -0.02 3.38 16 26 H 0.13 2.91 7.84 -2.91 -0.02 2.89 16 27 H 0.06 1.53 7.79 -2.39 -0.02 1.51 16 28 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.42 6.77 8.46 -92.70 -0.78 5.98 16 30 H 0.12 1.26 7.88 -2.39 -0.02 1.24 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 2.13 7.31 -2.39 -0.02 2.11 16 33 H 0.11 1.25 8.03 -2.39 -0.02 1.23 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.00 312.66 1.62 -68.38 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.42 Total: 28.69 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 4.31 Total: -8.85 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -4.25 Total: -116.78 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.18 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.00 1.62 -68.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699223578.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.549 kcal (2) G-P(sol) polarization free energy of solvation -69.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds