Wall clock time and date at job start Sun Mar 29 2020 22:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48492 * 109.46987 * 269.99580 * 3 2 1 5 5 H 1.48505 * 109.47167 * 29.99389 * 3 2 1 6 6 H 1.48501 * 109.47487 * 149.99588 * 3 2 1 7 7 C 1.38813 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99680 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00448 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.30998 * 119.99980 * 127.00825 * 11 10 9 13 13 C 1.50707 * 120.00127 * 7.55730 * 12 11 10 14 14 N 1.46494 * 109.47129 * 127.15743 * 13 12 11 15 15 C 1.34776 * 119.99951 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99903 * 179.97438 * 15 14 13 18 18 C 1.53783 * 113.61540 * 180.02562 * 17 15 14 19 19 C 1.53784 * 87.17427 * 220.06248 * 18 17 15 20 20 C 1.53781 * 87.07884 * 25.38831 * 19 18 17 21 21 H 0.97001 * 120.00063 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99323 * 0.02562 * 9 7 2 23 23 H 1.08999 * 109.46926 * 60.00545 * 10 9 7 24 24 H 1.08997 * 109.47553 * 299.99905 * 10 9 7 25 25 H 1.07997 * 120.00321 * 307.00660 * 11 10 9 26 26 H 1.07997 * 120.00526 * 187.55994 * 12 11 10 27 27 H 1.09007 * 109.46674 * 7.15684 * 13 12 11 28 28 H 1.08998 * 109.47265 * 247.16434 * 13 12 11 29 29 H 0.96997 * 120.00125 * 0.02562 * 14 13 12 30 30 H 1.09004 * 112.91044 * 311.25335 * 17 15 14 31 31 H 1.08996 * 113.61553 * 105.47145 * 18 17 15 32 32 H 1.09007 * 113.61286 * 334.65304 * 18 17 15 33 33 H 1.08999 * 113.61164 * 139.93478 * 19 18 17 34 34 H 1.08992 * 113.61309 * 270.84160 * 19 18 17 35 35 H 1.09001 * 113.61741 * 89.11998 * 20 19 18 36 36 H 1.09005 * 113.61566 * 219.93382 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.5938 -2.1954 0.0023 12 6 6.3618 -2.7475 0.9086 13 6 5.7979 -3.7877 1.8421 14 7 6.6353 -4.9888 1.7979 15 6 6.3211 -6.0576 2.5565 16 8 5.3449 -6.0252 3.2754 17 6 7.1822 -7.2935 2.5106 18 6 6.6898 -8.4221 3.4318 19 6 8.1660 -8.6826 3.7752 20 6 8.4288 -7.2120 3.4104 21 1 -0.4850 0.8400 -0.0004 22 1 3.8646 -0.3620 0.0014 23 1 3.8492 -3.0422 -0.8892 24 1 3.8485 -3.0427 0.8908 25 1 6.0224 -1.5430 -0.7439 26 1 7.3991 -2.4573 0.9869 27 1 4.7833 -4.0404 1.5340 28 1 5.7815 -3.3933 2.8581 29 1 7.4159 -5.0150 1.2227 30 1 7.3980 -7.6228 1.4941 31 1 6.2138 -9.2448 2.8984 32 1 6.1004 -8.0690 4.2781 33 1 8.3361 -8.9084 4.8279 34 1 8.6514 -9.3921 3.1052 35 1 8.3152 -6.5267 4.2504 36 1 9.3574 -7.0576 2.8609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716259645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:47 Heat of formation + Delta-G solvation = 14.692897 kcal Electronic energy + Delta-G solvation = -16156.326288 eV Core-core repulsion = 13449.053640 eV Total energy + Delta-G solvation = -2707.272648 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32480 -37.82441 -36.51849 -34.59497 -32.83510 -30.86735 -27.94992 -26.09685 -25.85929 -24.66771 -22.06632 -21.03343 -19.74671 -18.90531 -17.72299 -16.92525 -16.33721 -15.75213 -15.46783 -14.78185 -14.46855 -13.87391 -13.77610 -13.23650 -12.99612 -12.80536 -12.72290 -12.64031 -12.21771 -11.89259 -11.44124 -11.22056 -10.86255 -10.82894 -10.68122 -10.53058 -10.11996 -9.81337 -9.59699 -9.23755 -9.05537 -8.65507 -7.22435 -5.76409 -3.12719 2.14517 2.60734 3.35594 3.38103 3.40594 3.45805 4.23800 4.31261 4.48150 4.53002 4.59462 4.86821 5.03364 5.18516 5.26862 5.36661 5.49354 5.52152 5.56121 5.57165 5.64266 5.70000 5.79780 5.83494 6.08002 6.13652 6.28759 6.44469 6.50604 6.76340 7.02345 7.50134 7.99353 8.23288 8.42179 9.20627 9.92491 10.12076 11.41831 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050195 B = 0.003831 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.694929 B = 7307.618172 C = 7632.940379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.119 4.119 12 C -0.192 4.192 13 C 0.137 3.863 14 N -0.723 5.723 15 C 0.517 3.483 16 O -0.538 6.538 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.143 4.143 20 C -0.123 4.123 21 H 0.260 0.740 22 H 0.362 0.638 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.398 0.602 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.063 -14.285 3.897 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.397 5.397 10 C 0.040 3.960 11 C -0.139 4.139 12 C -0.212 4.212 13 C 0.015 3.985 14 N -0.374 5.374 15 C 0.303 3.697 16 O -0.414 6.414 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.180 4.180 20 C -0.161 4.161 21 H 0.070 0.930 22 H 0.194 0.806 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.131 0.869 26 H 0.130 0.870 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 20.079 -14.332 4.428 25.064 hybrid contribution 0.981 1.422 -0.433 1.781 sum 21.060 -12.911 3.995 25.024 Atomic orbital electron populations 1.69704 1.05102 1.25883 1.57379 1.24678 0.95258 0.97257 1.01907 0.86521 0.79251 0.84875 0.77752 1.21042 1.21643 1.20288 1.19076 0.80424 0.94893 1.43238 0.89107 1.42618 1.03955 1.01888 1.91211 1.19974 0.86511 0.89956 0.99571 1.23310 0.96805 0.97784 0.95985 1.22641 1.00149 1.00379 0.98019 1.20581 0.95174 0.83321 0.99451 1.46048 1.30801 1.15035 1.45558 1.20518 0.85373 0.84285 0.79520 1.90722 1.28001 1.82551 1.40142 1.22829 0.97379 0.94610 1.01204 1.22806 0.96497 0.96682 0.99652 1.22833 0.96899 0.96314 1.01961 1.22848 0.96250 0.97832 0.99195 0.92994 0.80552 0.94548 0.93903 0.86925 0.87006 0.89221 0.91114 0.76789 0.87018 0.91006 0.88630 0.91009 0.89934 0.89698 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.85 13.97 55.49 0.78 -29.07 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.40 27.74 -169.99 -4.71 17.68 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.25 -7.19 10.47 -15.06 -0.16 -7.34 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.75 -18.37 5.40 -61.09 -0.33 -18.70 16 10 C 0.17 3.28 6.35 -5.19 -0.03 3.25 16 11 C -0.12 -1.81 9.63 -36.02 -0.35 -2.16 16 12 C -0.19 -2.46 9.63 -36.02 -0.35 -2.81 16 13 C 0.14 1.91 5.76 -5.19 -0.03 1.88 16 14 N -0.72 -8.16 5.55 -61.47 -0.34 -8.50 16 15 C 0.52 6.60 7.36 -10.99 -0.08 6.52 16 16 O -0.54 -9.38 15.90 5.56 0.09 -9.29 16 17 C -0.14 -1.21 4.16 -90.87 -0.38 -1.59 16 18 C -0.12 -1.05 7.40 -25.92 -0.19 -1.25 16 19 C -0.14 -0.94 8.09 -25.92 -0.21 -1.15 16 20 C -0.12 -0.87 7.64 -25.83 -0.20 -1.07 16 21 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 22 H 0.36 8.56 5.52 -40.82 -0.23 8.33 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.88 5.29 -51.93 -0.27 0.60 16 25 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 26 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.09 1.48 5.30 -51.92 -0.28 1.20 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.40 3.22 8.46 -40.82 -0.35 2.88 16 30 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.04 7.43 -51.92 -0.39 0.66 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -34.34 300.83 -7.38 -41.72 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.32 Total: 7.30 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.07 Total: -5.67 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.10 Total: -56.27 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.34 -7.38 -41.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716259645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.412 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds