Wall clock time and date at job start Sun Mar 29 2020 22:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48492 * 109.46987 * 269.99580 * 3 2 1 5 5 H 1.48505 * 109.47167 * 29.99389 * 3 2 1 6 6 H 1.48501 * 109.47487 * 149.99588 * 3 2 1 7 7 C 1.38813 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99680 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00448 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46988 * 180.02562 * 10 9 7 12 12 C 1.30998 * 119.99980 * 127.00825 * 11 10 9 13 13 C 1.50707 * 120.00127 * 7.55730 * 12 11 10 14 14 N 1.46494 * 109.47129 * 127.15743 * 13 12 11 15 15 C 1.34776 * 119.99951 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99903 * 179.97438 * 15 14 13 18 18 C 1.53783 * 113.61540 * 180.02562 * 17 15 14 19 19 C 1.53784 * 87.17427 * 220.06248 * 18 17 15 20 20 C 1.53781 * 87.07884 * 25.38831 * 19 18 17 21 21 H 0.97001 * 120.00063 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99323 * 0.02562 * 9 7 2 23 23 H 1.08999 * 109.46926 * 60.00545 * 10 9 7 24 24 H 1.08997 * 109.47553 * 299.99905 * 10 9 7 25 25 H 1.07997 * 120.00321 * 307.00660 * 11 10 9 26 26 H 1.07997 * 120.00526 * 187.55994 * 12 11 10 27 27 H 1.09007 * 109.46674 * 7.15684 * 13 12 11 28 28 H 1.08998 * 109.47265 * 247.16434 * 13 12 11 29 29 H 0.96997 * 120.00125 * 0.02562 * 14 13 12 30 30 H 1.09004 * 112.91044 * 311.25335 * 17 15 14 31 31 H 1.08996 * 113.61553 * 105.47145 * 18 17 15 32 32 H 1.09007 * 113.61286 * 334.65304 * 18 17 15 33 33 H 1.08999 * 113.61164 * 139.93478 * 19 18 17 34 34 H 1.08992 * 113.61309 * 270.84160 * 19 18 17 35 35 H 1.09001 * 113.61741 * 89.11998 * 20 19 18 36 36 H 1.09005 * 113.61566 * 219.93382 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.5938 -2.1954 0.0023 12 6 6.3618 -2.7475 0.9086 13 6 5.7979 -3.7877 1.8421 14 7 6.6353 -4.9888 1.7979 15 6 6.3211 -6.0576 2.5565 16 8 5.3449 -6.0252 3.2754 17 6 7.1822 -7.2935 2.5106 18 6 6.6898 -8.4221 3.4318 19 6 8.1660 -8.6826 3.7752 20 6 8.4288 -7.2120 3.4104 21 1 -0.4850 0.8400 -0.0004 22 1 3.8646 -0.3620 0.0014 23 1 3.8492 -3.0422 -0.8892 24 1 3.8485 -3.0427 0.8908 25 1 6.0224 -1.5430 -0.7439 26 1 7.3991 -2.4573 0.9869 27 1 4.7833 -4.0404 1.5340 28 1 5.7815 -3.3933 2.8581 29 1 7.4159 -5.0150 1.2227 30 1 7.3980 -7.6228 1.4941 31 1 6.2138 -9.2448 2.8984 32 1 6.1004 -8.0690 4.2781 33 1 8.3361 -8.9084 4.8279 34 1 8.6514 -9.3921 3.1052 35 1 8.3152 -6.5267 4.2504 36 1 9.3574 -7.0576 2.8609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716259645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:47 Heat of formation + Delta-G solvation = -10.515544 kcal Electronic energy + Delta-G solvation = -16157.419408 eV Core-core repulsion = 13449.053640 eV Total energy + Delta-G solvation = -2708.365768 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24451 -38.71455 -37.84234 -36.16750 -34.42331 -32.82549 -29.06968 -27.47303 -26.52877 -25.81727 -24.06414 -21.96318 -20.74476 -20.20136 -19.24064 -18.08811 -17.56551 -16.78151 -16.53110 -16.21884 -15.85566 -15.44716 -14.99103 -14.81226 -14.34612 -14.23446 -13.80725 -13.56546 -13.38467 -13.10175 -12.86295 -12.74393 -12.22454 -12.14374 -11.89596 -11.67079 -11.42263 -11.27225 -11.08974 -10.82491 -10.34431 -9.96571 -9.29607 -8.06766 -5.42136 1.01197 1.36305 1.41427 1.49072 1.61182 2.39111 2.46261 3.24139 3.55191 3.67172 3.73095 3.82672 3.85047 3.93593 4.09140 4.26356 4.29790 4.56261 4.71750 4.81269 4.82482 4.87056 4.88166 5.04112 5.05235 5.10840 5.20130 5.38264 5.52774 5.55043 5.68048 5.84451 6.16893 6.59202 7.03077 7.28375 7.76933 7.98915 9.14850 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.050195 B = 0.003831 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.694929 B = 7307.618172 C = 7632.940379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.245 4.245 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.162 3.838 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.134 3.866 14 N -0.707 5.707 15 C 0.510 3.490 16 O -0.595 6.595 17 C -0.134 4.134 18 C -0.133 4.133 19 C -0.130 4.130 20 C -0.116 4.116 21 H 0.260 0.740 22 H 0.369 0.631 23 H 0.029 0.971 24 H 0.031 0.969 25 H 0.137 0.863 26 H 0.156 0.844 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.419 0.581 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.299 -13.959 3.336 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.376 4.376 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.037 3.963 11 C -0.158 4.158 12 C -0.172 4.172 13 C 0.011 3.989 14 N -0.359 5.359 15 C 0.298 3.702 16 O -0.475 6.475 17 C -0.155 4.155 18 C -0.171 4.171 19 C -0.167 4.167 20 C -0.154 4.154 21 H 0.069 0.931 22 H 0.203 0.797 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.154 0.846 26 H 0.174 0.826 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.256 0.744 30 H 0.159 0.841 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 24.402 -14.038 3.839 28.412 hybrid contribution -0.379 1.150 -0.211 1.229 sum 24.022 -12.889 3.628 27.502 Atomic orbital electron populations 1.69905 1.07335 1.26994 1.59193 1.25630 0.96259 1.01739 1.02059 0.85281 0.78600 0.78716 0.78409 1.19799 1.22065 1.17368 1.19040 0.82743 0.93548 1.42270 0.93127 1.42591 1.02327 1.03970 1.91028 1.20054 0.89821 0.87894 0.98580 1.23067 0.93683 1.00531 0.98538 1.22839 1.01574 0.97669 0.95084 1.20405 0.94462 0.84893 0.99178 1.45874 1.30851 1.13828 1.45384 1.21369 0.84960 0.85482 0.78396 1.90702 1.30660 1.83622 1.42552 1.22985 0.97314 0.92148 1.03071 1.22844 0.98109 0.97090 0.99015 1.22825 0.94606 0.96544 1.02741 1.22842 0.96340 0.97787 0.98439 0.93121 0.79706 0.95347 0.95097 0.84567 0.82638 0.92492 0.92236 0.74384 0.84056 0.90500 0.91651 0.90775 0.87646 0.91210 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.95 13.97 21.65 0.30 -64.65 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.96 46.08 27.74 68.60 1.90 47.99 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 7 C -0.25 -14.71 10.47 84.03 0.88 -13.83 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.75 -36.68 5.40 -347.18 -1.87 -38.55 16 10 C 0.16 6.41 6.35 85.64 0.54 6.96 16 11 C -0.14 -3.85 9.63 25.65 0.25 -3.60 16 12 C -0.15 -3.38 9.63 25.65 0.25 -3.14 16 13 C 0.13 3.63 5.76 85.64 0.49 4.12 16 14 N -0.71 -14.71 5.55 -466.79 -2.59 -17.30 16 15 C 0.51 12.77 7.36 87.66 0.65 13.42 16 16 O -0.59 -21.71 15.90 -3.04 -0.05 -21.75 16 17 C -0.13 -2.08 4.16 -10.95 -0.05 -2.12 16 18 C -0.13 -2.27 7.40 31.12 0.23 -2.04 16 19 C -0.13 -1.38 8.09 31.12 0.25 -1.13 16 20 C -0.12 -1.32 7.64 31.18 0.24 -1.08 16 21 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 22 H 0.37 16.71 5.52 -92.70 -0.51 16.19 16 23 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.32 5.29 -2.39 -0.01 1.31 16 25 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 26 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 27 H 0.06 1.95 5.30 -2.38 -0.01 1.94 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.42 5.27 8.46 -92.71 -0.78 4.49 16 30 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.52 7.43 -2.38 -0.02 1.50 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 36 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -79.05 300.83 1.62 -77.43 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -0.27 Total: 22.80 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 4.20 Total: -5.96 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -4.16 Total: -120.50 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.05 Total: -21.75 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.99 kcal Total: -79.05 1.62 -77.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716259645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.914 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds