Wall clock time and date at job start Sun Mar 29 2020 22:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47125 * 274.99074 * 3 2 1 5 5 H 1.48507 * 109.46836 * 34.98829 * 3 2 1 6 6 H 1.48500 * 109.47021 * 154.98500 * 3 2 1 7 7 C 1.38815 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99851 * 185.06712 * 7 2 1 9 9 N 1.36934 * 119.99993 * 5.06110 * 7 2 1 10 10 C 1.47584 * 134.48965 * 173.47977 * 9 7 2 11 11 C 1.53952 * 86.11351 * 155.36068 * 10 9 7 12 12 N 1.46505 * 113.74071 * 137.95420 * 11 10 9 13 13 C 1.34774 * 119.99937 * 156.92153 * 12 11 10 14 14 O 1.21281 * 120.00120 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99948 * 179.72050 * 13 12 11 16 16 C 1.52993 * 109.47135 * 180.27912 * 15 13 12 17 17 C 1.53000 * 109.47151 * 180.02562 * 16 15 13 18 18 C 1.53005 * 117.49736 * 243.74825 * 17 16 15 19 19 C 1.53004 * 117.50024 * 175.08767 * 17 16 15 20 20 C 1.47816 * 134.45865 * 353.35016 * 9 7 2 21 21 H 0.96994 * 120.00535 * 359.97438 * 1 2 3 22 22 H 1.08998 * 113.77100 * 41.06184 * 10 9 7 23 23 H 1.08997 * 113.76991 * 269.65467 * 10 9 7 24 24 H 1.09005 * 113.74339 * 269.15245 * 11 10 9 25 25 H 0.96995 * 119.99807 * 336.92583 * 12 11 10 26 26 H 1.08998 * 109.47241 * 300.28028 * 15 13 12 27 27 H 1.09004 * 109.46625 * 60.27808 * 15 13 12 28 28 H 1.09007 * 109.47002 * 299.99901 * 16 15 13 29 29 H 1.08997 * 109.47604 * 60.00113 * 16 15 13 30 30 H 1.08999 * 115.55171 * 29.41259 * 17 16 15 31 31 H 1.08998 * 117.50055 * 359.97438 * 18 17 16 32 32 H 1.08996 * 117.50261 * 145.02058 * 18 17 16 33 33 H 1.08998 * 117.50030 * 214.97737 * 19 17 16 34 34 H 1.09003 * 117.49644 * 359.97438 * 19 17 16 35 35 H 1.08996 * 113.76820 * 90.37365 * 20 9 7 36 36 H 1.09004 * 113.83216 * 318.91512 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0870 -1.2040 0.0821 9 7 1.3296 -2.3857 -0.1057 10 6 1.7288 -3.7983 -0.2583 11 6 0.3710 -4.1420 0.3810 12 7 -0.3174 -5.2632 -0.2635 13 6 -1.2387 -5.9708 0.4198 14 8 -1.4983 -5.6791 1.5680 15 6 -1.9514 -7.1201 -0.2451 16 6 -2.9424 -7.7440 0.7395 17 6 -3.6655 -8.9113 0.0646 18 6 -5.1776 -8.7864 -0.1328 19 6 -4.6197 -9.7431 0.9240 20 6 -0.1001 -2.7609 -0.1095 21 1 -0.4850 0.8399 0.0004 22 1 2.5860 -4.0811 0.3526 23 1 1.8196 -4.1196 -1.2959 24 1 0.4076 -4.2332 1.4666 25 1 -0.1100 -5.4963 -1.1819 26 1 -2.4893 -6.7565 -1.1207 27 1 -1.2229 -7.8706 -0.5521 28 1 -2.4044 -8.1077 1.6150 29 1 -3.6708 -6.9935 1.0465 30 1 -3.0986 -9.4327 -0.7067 31 1 -5.6573 -7.8728 0.2185 32 1 -5.6056 -9.2260 -1.0336 33 1 -4.6809 -10.8116 0.7179 34 1 -4.7319 -9.4589 1.9704 35 1 -0.5475 -2.7767 -1.1032 36 1 -0.7002 -2.2169 0.6200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753373779.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:57 Heat of formation + Delta-G solvation = 30.082338 kcal Electronic energy + Delta-G solvation = -16390.158256 eV Core-core repulsion = 13683.552944 eV Total energy + Delta-G solvation = -2706.605312 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.58638 -37.91461 -37.23963 -33.46257 -32.27750 -31.60525 -27.55020 -25.18608 -24.82036 -22.77843 -22.52709 -20.56023 -20.04198 -19.49815 -16.78216 -16.64882 -15.94457 -15.66476 -15.22794 -14.83778 -14.29949 -13.86222 -13.51820 -13.24863 -12.66620 -12.22917 -11.86649 -11.73937 -11.50512 -11.44942 -11.36447 -11.26025 -10.87944 -10.78016 -10.46095 -10.43849 -10.04016 -10.01612 -9.54578 -9.39962 -8.80752 -8.40192 -6.91216 -5.79258 -3.12361 2.98057 3.38743 3.42684 3.46445 3.52141 3.66713 4.44334 4.55409 4.72116 4.77890 4.90837 5.11475 5.19554 5.29949 5.40309 5.45857 5.46387 5.60287 5.65226 5.74100 5.87321 5.93907 6.03592 6.05938 6.22242 6.28822 6.43128 6.57443 6.80358 7.23738 7.37037 7.55882 7.92685 7.95847 8.61360 9.01897 9.68202 10.55993 11.38075 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.063351 B = 0.003868 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.874907 B = 7237.840003 C = 7451.134060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.112 3.888 11 C 0.090 3.910 12 N -0.718 5.718 13 C 0.508 3.492 14 O -0.546 6.546 15 C -0.138 4.138 16 C -0.074 4.074 17 C -0.153 4.153 18 C -0.183 4.183 19 C -0.183 4.183 20 C 0.157 3.843 21 H 0.255 0.745 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.109 0.891 25 H 0.396 0.604 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.030 0.970 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -17.717 -2.732 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.015 4.015 12 N -0.368 5.368 13 C 0.294 3.706 14 O -0.424 6.424 15 C -0.178 4.178 16 C -0.112 4.112 17 C -0.171 4.171 18 C -0.220 4.220 19 C -0.220 4.220 20 C 0.030 3.970 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.127 0.873 25 H 0.230 0.770 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.050 -17.128 -1.859 18.260 hybrid contribution 0.544 0.845 -0.737 1.247 sum -5.506 -16.282 -2.596 17.383 Atomic orbital electron populations 1.69848 1.05102 1.25525 1.55801 1.24858 0.95695 0.97670 1.02045 0.86093 0.78740 0.83404 0.77499 1.21575 1.21625 1.20473 1.18993 0.90744 0.81731 1.43981 0.90017 1.45716 1.02443 1.00563 1.84707 1.22872 0.94766 0.86773 0.97080 1.23884 0.93333 0.85567 0.98693 1.46176 1.41037 1.33196 1.16407 1.20672 0.79743 0.83428 0.86782 1.90694 1.64354 1.69379 1.17958 1.21657 0.99186 0.96747 1.00189 1.20915 0.97538 0.95418 0.97305 1.22376 0.92078 1.00217 1.02396 1.23067 0.96266 1.01841 1.00778 1.22971 1.04727 0.97192 0.97101 1.22649 0.88015 0.88139 0.98162 0.93520 0.93339 0.94747 0.87309 0.77032 0.88971 0.89195 0.90858 0.90957 0.87825 0.88662 0.89046 0.89026 0.88731 0.95221 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 11.51 55.49 0.64 -27.07 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.82 3.70 -177.87 -0.66 -16.48 16 10 C 0.11 2.26 8.69 -2.96 -0.03 2.23 16 11 C 0.09 1.78 4.40 -70.14 -0.31 1.47 16 12 N -0.72 -11.02 5.37 -55.33 -0.30 -11.31 16 13 C 0.51 7.86 7.83 -10.99 -0.09 7.77 16 14 O -0.55 -10.87 15.60 5.56 0.09 -10.78 16 15 C -0.14 -1.45 5.66 -27.89 -0.16 -1.61 16 16 C -0.07 -0.81 4.78 -26.73 -0.13 -0.94 16 17 C -0.15 -1.34 5.73 -90.62 -0.52 -1.86 16 18 C -0.18 -1.53 10.18 -26.69 -0.27 -1.81 16 19 C -0.18 -1.52 10.26 -26.69 -0.27 -1.79 16 20 C 0.16 3.81 7.24 -2.84 -0.02 3.79 16 21 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.64 8.11 -51.93 -0.42 0.22 16 24 H 0.11 2.35 7.51 -51.93 -0.39 1.96 16 25 H 0.40 4.82 8.71 -40.82 -0.36 4.47 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 30 H 0.10 0.79 8.08 -51.93 -0.42 0.38 16 31 H 0.09 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.99 7.37 -51.93 -0.38 1.61 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -33.19 304.90 -8.43 -41.62 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.72 Total: 1.76 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.05 Total: 0.39 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.32 Total: -54.86 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.19 -8.43 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753373779.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.699 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds