Wall clock time and date at job start Sun Mar 29 2020 21:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 120.00352 * 2 1 4 4 H 1.48497 * 109.47001 * 264.98917 * 3 2 1 5 5 H 1.48503 * 109.46919 * 24.98637 * 3 2 1 6 6 H 1.48496 * 109.47234 * 144.98596 * 3 2 1 7 7 C 1.40053 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00485 * 186.81002 * 7 2 1 9 9 C 1.46383 * 119.99465 * 6.81158 * 7 2 1 10 10 O 1.21680 * 120.00175 * 6.82891 * 9 7 2 11 11 N 1.34778 * 119.99763 * 186.82980 * 9 7 2 12 12 C 1.47025 * 125.64569 * 0.02627 * 11 9 7 13 13 C 1.54327 * 107.26754 * 181.01881 * 12 11 9 14 14 C 1.55161 * 103.10063 * 22.10718 * 13 12 11 15 15 H 1.08996 * 111.00750 * 82.66143 * 14 13 12 16 16 N 1.46904 * 111.00018 * 206.50981 * 14 13 12 17 17 C 1.48532 * 110.99749 * 177.96520 * 16 14 13 18 18 C 1.54939 * 103.22886 * 159.71753 * 17 16 14 19 19 C 1.54591 * 102.92083 * 322.59148 * 18 17 16 20 20 C 1.47897 * 111.00103 * 295.35814 * 16 14 13 21 21 C 1.47424 * 125.64774 * 179.97438 * 11 9 7 22 22 H 0.97006 * 119.99633 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88309 * 61.60626 * 12 11 9 24 24 H 1.08998 * 109.88357 * 300.43467 * 12 11 9 25 25 H 1.09004 * 110.71790 * 140.55346 * 13 12 11 26 26 H 1.08998 * 110.72564 * 263.65378 * 13 12 11 27 27 H 1.08996 * 110.67084 * 278.15879 * 17 16 14 28 28 H 1.09000 * 110.66965 * 41.28514 * 17 16 14 29 29 H 1.08994 * 110.72744 * 204.22795 * 18 17 16 30 30 H 1.09001 * 110.87039 * 81.01240 * 18 17 16 31 31 H 1.09006 * 110.30453 * 263.03825 * 19 18 17 32 32 H 1.09002 * 110.39960 * 140.91411 * 19 18 17 33 33 H 1.09004 * 109.91951 * 333.51598 * 20 16 14 34 34 H 1.09001 * 109.91709 * 94.60839 * 20 16 14 35 35 H 1.08996 * 110.36728 * 274.74874 * 21 11 9 36 36 H 1.08994 * 110.36353 * 36.96382 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5942 1.9852 -1.3947 5 1 1.3893 2.6810 0.5914 6 1 3.4813 1.4730 0.8033 7 6 2.0070 -1.2129 0.0005 8 1 3.0812 -1.2162 0.1114 9 6 1.2827 -2.4761 -0.1493 10 8 0.0917 -2.4688 -0.3982 11 7 1.9352 -3.6474 -0.0114 12 6 3.3663 -3.8008 0.2885 13 6 3.6668 -5.3141 0.3262 14 6 2.5104 -5.9232 -0.5100 15 1 2.7281 -5.8678 -1.5765 16 7 2.2380 -7.3078 -0.1017 17 6 1.0991 -7.8746 -0.8684 18 6 1.2945 -9.4039 -0.7150 19 6 2.8310 -9.5639 -0.7752 20 6 3.3944 -8.1831 -0.3914 21 6 1.3318 -4.9868 -0.1353 22 1 -0.4850 0.8401 -0.0004 23 1 3.5922 -3.3538 1.2566 24 1 3.9615 -3.3240 -0.4903 25 1 4.6307 -5.5275 -0.1359 26 1 3.6404 -5.6872 1.3500 27 1 0.1495 -7.5626 -0.4338 28 1 1.1579 -7.5826 -1.9169 29 1 0.8186 -9.9380 -1.5373 30 1 0.9080 -9.7506 0.2434 31 1 3.1440 -9.8331 -1.7840 32 1 3.1626 -10.3192 -0.0627 33 1 3.9714 -7.7738 -1.2208 34 1 4.0258 -8.2692 0.4930 35 1 0.8933 -5.2946 0.8139 36 1 0.5760 -4.9911 -0.9206 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041569417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:20 Heat of formation + Delta-G solvation = -31.909091 kcal Electronic energy + Delta-G solvation = -17220.463634 eV Core-core repulsion = 14511.170172 eV Total energy + Delta-G solvation = -2709.293462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.38154 -37.61559 -35.43981 -32.50508 -31.80868 -29.47264 -28.66635 -27.69446 -25.74192 -22.61759 -21.64694 -20.80705 -19.82532 -19.00317 -16.74654 -16.36330 -15.84472 -15.48021 -14.55182 -14.09230 -13.89892 -13.66135 -13.28758 -13.03353 -12.55229 -12.41902 -11.97079 -11.84941 -11.41044 -11.35597 -11.19526 -11.08217 -10.89102 -10.80086 -10.64677 -10.43983 -10.39230 -10.30135 -10.13449 -8.83613 -8.35851 -7.62902 -7.15777 -6.21861 -4.62387 3.15476 3.21537 3.24492 3.91346 4.13573 4.55183 4.59234 4.59884 4.74035 4.90920 5.03970 5.23523 5.26428 5.43331 5.47412 5.61779 5.69497 5.74906 5.78140 5.82855 5.89529 5.96577 6.06745 6.09945 6.15955 6.40029 6.49983 6.52460 6.69874 6.95816 7.19634 7.42792 7.45383 8.12280 8.43873 9.02898 9.51253 10.58451 10.76832 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056584 B = 0.005237 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.720255 B = 5345.754394 C = 5750.780919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.574 3.426 10 O -0.579 6.579 11 N -0.645 5.645 12 C 0.123 3.877 13 C -0.122 4.122 14 C 0.059 3.941 15 H 0.052 0.948 16 N -0.507 5.507 17 C 0.033 3.967 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.037 3.963 21 C 0.129 3.871 22 H 0.269 0.731 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.658 -14.676 -0.924 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.380 3.620 10 O -0.462 6.462 11 N -0.386 5.386 12 C -0.002 4.002 13 C -0.160 4.160 14 C -0.051 4.051 15 H 0.070 0.930 16 N -0.231 5.231 17 C -0.095 4.095 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.091 4.091 21 C 0.004 3.996 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.659 -14.436 -0.506 15.906 hybrid contribution 0.790 0.790 -0.883 1.424 sum 7.449 -13.646 -1.389 15.609 Atomic orbital electron populations 1.69993 1.07156 1.27477 1.35230 1.25719 0.94595 1.00312 0.92507 0.86373 0.80062 0.81204 0.79039 1.19613 1.20482 1.18929 1.20870 0.94223 0.89147 1.53451 0.91210 1.18030 0.86213 0.81124 0.76619 1.90595 1.15763 1.85956 1.53846 1.48662 1.08017 1.04638 1.77255 1.21558 0.84858 0.93663 1.00116 1.22679 0.96944 0.95637 1.00770 1.23073 0.97198 0.87797 0.97012 0.92973 1.64747 1.04126 1.01131 1.53127 1.23243 0.95795 0.93902 0.96537 1.22472 0.95632 0.95813 1.02191 1.22398 0.96015 0.97187 1.01318 1.22815 0.93789 0.92328 1.00151 1.21706 0.94039 0.83570 1.00291 0.91990 0.92588 0.92983 0.91490 0.90318 0.89680 0.93721 0.91292 0.90767 0.91782 0.91178 0.93924 0.90432 0.92743 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.44 11.91 55.55 0.66 -22.78 16 2 C 0.09 2.51 5.48 -17.37 -0.10 2.41 16 3 Si 0.91 20.38 29.56 -169.99 -5.03 15.36 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.63 9.04 -35.63 -0.32 -15.95 16 8 H 0.07 1.86 7.17 -52.49 -0.38 1.48 16 9 C 0.57 17.05 7.75 -12.98 -0.10 16.95 16 10 O -0.58 -19.46 15.37 5.21 0.08 -19.38 16 11 N -0.65 -15.54 3.33 -172.04 -0.57 -16.12 16 12 C 0.12 2.36 6.07 -3.06 -0.02 2.34 16 13 C -0.12 -1.85 5.97 -24.89 -0.15 -1.99 16 14 C 0.06 0.94 2.36 -65.44 -0.15 0.79 16 15 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 16 N -0.51 -7.02 5.15 -219.81 -1.13 -8.15 16 17 C 0.03 0.41 6.01 -1.90 -0.01 0.40 16 18 C -0.12 -1.21 7.06 -24.87 -0.18 -1.39 16 19 C -0.13 -1.21 6.93 -25.38 -0.18 -1.39 16 20 C 0.04 0.42 6.09 -2.76 -0.02 0.40 16 21 C 0.13 2.65 5.99 -2.41 -0.01 2.64 16 22 H 0.27 7.41 8.29 -40.82 -0.34 7.08 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 28 H 0.04 0.57 8.00 -51.93 -0.42 0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 LS Contribution 292.24 15.07 4.40 4.40 Total: -1.00 -34.35 292.24 -8.63 -42.98 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.81 Total: -1.53 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.23 Total: 5.21 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -1.04 Total: -47.04 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.08 Total: -19.38 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.35 -8.63 -42.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.070 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds