Wall clock time and date at job start Sun Mar 29 2020 21:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 120.00352 * 2 1 4 4 H 1.48497 * 109.47001 * 264.98917 * 3 2 1 5 5 H 1.48503 * 109.46919 * 24.98637 * 3 2 1 6 6 H 1.48496 * 109.47234 * 144.98596 * 3 2 1 7 7 C 1.40053 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00485 * 186.81002 * 7 2 1 9 9 C 1.46383 * 119.99465 * 6.81158 * 7 2 1 10 10 O 1.21680 * 120.00175 * 6.82891 * 9 7 2 11 11 N 1.34778 * 119.99763 * 186.82980 * 9 7 2 12 12 C 1.47025 * 125.64569 * 0.02627 * 11 9 7 13 13 C 1.54327 * 107.26754 * 181.01881 * 12 11 9 14 14 C 1.55161 * 103.10063 * 22.10718 * 13 12 11 15 15 H 1.08996 * 111.00750 * 82.66143 * 14 13 12 16 16 N 1.46904 * 111.00018 * 206.50981 * 14 13 12 17 17 C 1.48532 * 110.99749 * 177.96520 * 16 14 13 18 18 C 1.54939 * 103.22886 * 159.71753 * 17 16 14 19 19 C 1.54591 * 102.92083 * 322.59148 * 18 17 16 20 20 C 1.47897 * 111.00103 * 295.35814 * 16 14 13 21 21 C 1.47424 * 125.64774 * 179.97438 * 11 9 7 22 22 H 0.97006 * 119.99633 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.88309 * 61.60626 * 12 11 9 24 24 H 1.08998 * 109.88357 * 300.43467 * 12 11 9 25 25 H 1.09004 * 110.71790 * 140.55346 * 13 12 11 26 26 H 1.08998 * 110.72564 * 263.65378 * 13 12 11 27 27 H 1.08996 * 110.67084 * 278.15879 * 17 16 14 28 28 H 1.09000 * 110.66965 * 41.28514 * 17 16 14 29 29 H 1.08994 * 110.72744 * 204.22795 * 18 17 16 30 30 H 1.09001 * 110.87039 * 81.01240 * 18 17 16 31 31 H 1.09006 * 110.30453 * 263.03825 * 19 18 17 32 32 H 1.09002 * 110.39960 * 140.91411 * 19 18 17 33 33 H 1.09004 * 109.91951 * 333.51598 * 20 16 14 34 34 H 1.09001 * 109.91709 * 94.60839 * 20 16 14 35 35 H 1.08996 * 110.36728 * 274.74874 * 21 11 9 36 36 H 1.08994 * 110.36353 * 36.96382 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.5942 1.9852 -1.3947 5 1 1.3893 2.6810 0.5914 6 1 3.4813 1.4730 0.8033 7 6 2.0070 -1.2129 0.0005 8 1 3.0812 -1.2162 0.1114 9 6 1.2827 -2.4761 -0.1493 10 8 0.0917 -2.4688 -0.3982 11 7 1.9352 -3.6474 -0.0114 12 6 3.3663 -3.8008 0.2885 13 6 3.6668 -5.3141 0.3262 14 6 2.5104 -5.9232 -0.5100 15 1 2.7281 -5.8678 -1.5765 16 7 2.2380 -7.3078 -0.1017 17 6 1.0991 -7.8746 -0.8684 18 6 1.2945 -9.4039 -0.7150 19 6 2.8310 -9.5639 -0.7752 20 6 3.3944 -8.1831 -0.3914 21 6 1.3318 -4.9868 -0.1353 22 1 -0.4850 0.8401 -0.0004 23 1 3.5922 -3.3538 1.2566 24 1 3.9615 -3.3240 -0.4903 25 1 4.6307 -5.5275 -0.1359 26 1 3.6404 -5.6872 1.3500 27 1 0.1495 -7.5626 -0.4338 28 1 1.1579 -7.5826 -1.9169 29 1 0.8186 -9.9380 -1.5373 30 1 0.9080 -9.7506 0.2434 31 1 3.1440 -9.8331 -1.7840 32 1 3.1626 -10.3192 -0.0627 33 1 3.9714 -7.7738 -1.2208 34 1 4.0258 -8.2692 0.4930 35 1 0.8933 -5.2946 0.8139 36 1 0.5760 -4.9911 -0.9206 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041569417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:20 Heat of formation + Delta-G solvation = -57.141043 kcal Electronic energy + Delta-G solvation = -17221.557774 eV Core-core repulsion = 14511.170172 eV Total energy + Delta-G solvation = -2710.387601 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71938 -39.24237 -37.29115 -34.69341 -33.18501 -30.80969 -29.89455 -29.25406 -27.64774 -24.24418 -22.79074 -21.91540 -21.02120 -20.85558 -18.64057 -17.71710 -17.58549 -16.79609 -16.21926 -15.73706 -15.41327 -14.91076 -14.81260 -14.50200 -13.89889 -13.67206 -13.63199 -13.27911 -13.03548 -12.96626 -12.72762 -12.56386 -12.19473 -12.11878 -12.03953 -11.98491 -11.76153 -11.69317 -11.38978 -10.95543 -9.94157 -9.43835 -9.15474 -8.36225 -6.88588 1.38431 1.41056 1.55845 2.21277 2.40331 2.63876 3.14897 3.43733 3.54043 3.74612 3.82726 3.98569 4.07073 4.17256 4.35700 4.37590 4.51833 4.62267 4.72370 4.73405 4.87918 4.91869 4.95800 4.99305 5.01407 5.09159 5.20209 5.27321 5.28901 5.35435 5.58790 5.92980 5.98489 6.08119 6.36670 6.82539 7.42309 8.39582 8.62163 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.056584 B = 0.005237 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.720255 B = 5345.754394 C = 5750.780919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.246 1.246 7 C -0.565 4.565 8 H 0.089 0.911 9 C 0.552 3.448 10 O -0.637 6.637 11 N -0.654 5.654 12 C 0.115 3.885 13 C -0.104 4.104 14 C 0.077 3.923 15 H 0.052 0.948 16 N -0.517 5.517 17 C 0.025 3.975 18 C -0.117 4.117 19 C -0.125 4.125 20 C 0.034 3.966 21 C 0.127 3.873 22 H 0.277 0.723 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -15.471 -0.836 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.602 4.602 8 H 0.107 0.893 9 C 0.359 3.641 10 O -0.524 6.524 11 N -0.392 5.392 12 C -0.008 4.008 13 C -0.142 4.142 14 C -0.033 4.033 15 H 0.070 0.930 16 N -0.242 5.242 17 C -0.102 4.102 18 C -0.155 4.155 19 C -0.163 4.163 20 C -0.094 4.094 21 C 0.003 3.997 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.677 -15.299 -0.406 18.107 hybrid contribution -0.175 0.950 -0.897 1.319 sum 9.503 -14.348 -1.303 17.259 Atomic orbital electron populations 1.70163 1.09745 1.29261 1.36181 1.27053 0.95525 1.05099 0.90975 0.84986 0.78709 0.74601 0.79707 1.18550 1.19568 1.16930 1.21368 0.95263 0.89677 1.53861 0.89292 1.18483 0.85917 0.83208 0.76523 1.90532 1.18110 1.87372 1.56425 1.48505 1.10332 1.04513 1.75878 1.21840 0.81815 0.97047 1.00145 1.22619 0.98037 0.91998 1.01508 1.22808 0.94892 0.88504 0.97120 0.93042 1.64732 1.05723 1.00232 1.53478 1.23302 0.94846 0.96194 0.95903 1.22455 0.96657 0.93379 1.02964 1.22404 0.94956 0.96393 1.02583 1.22946 0.92813 0.92684 1.00920 1.21771 0.95596 0.83448 0.98929 0.91360 0.92634 0.92395 0.87721 0.89439 0.91421 0.94207 0.89683 0.90642 0.90510 0.89535 0.93433 0.89334 0.93794 0.94902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.84 11.91 21.84 0.26 -51.58 16 2 C 0.03 1.63 5.48 85.31 0.47 2.10 16 3 Si 1.00 41.62 29.56 68.60 2.03 43.65 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.57 -33.29 9.04 24.83 0.22 -33.06 16 8 H 0.09 4.70 7.17 -2.92 -0.02 4.68 16 9 C 0.55 34.23 7.75 86.36 0.67 34.90 16 10 O -0.64 -45.37 15.37 -4.29 -0.07 -45.44 16 11 N -0.65 -32.45 3.33 -816.43 -2.72 -35.17 16 12 C 0.12 4.31 6.07 86.73 0.53 4.84 16 13 C -0.10 -2.87 5.97 31.79 0.19 -2.68 16 14 C 0.08 2.39 2.36 46.38 0.11 2.50 16 15 H 0.05 1.63 8.08 -2.39 -0.02 1.61 16 16 N -0.52 -13.55 5.15 -849.33 -4.38 -17.93 16 17 C 0.03 0.63 6.01 86.65 0.52 1.15 16 18 C -0.12 -2.05 7.06 31.80 0.22 -1.82 16 19 C -0.13 -1.89 6.93 31.47 0.22 -1.67 16 20 C 0.03 0.64 6.09 86.45 0.53 1.17 16 21 C 0.13 5.45 5.99 86.93 0.52 5.97 16 22 H 0.28 15.66 8.29 -92.70 -0.77 14.89 16 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 25 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 28 H 0.04 1.01 8.00 -2.39 -0.02 0.99 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.88 7.75 -2.38 -0.02 0.87 16 34 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -78.88 292.24 0.37 -78.51 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.04 Total: 14.58 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 4.20 Total: 13.38 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.83 Total: -104.68 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.07 Total: -45.44 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -78.88 0.37 -78.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.366 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds