Wall clock time and date at job start Sun Mar 29 2020 21:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99335 * 2 1 4 4 H 1.48503 * 109.47003 * 239.72272 * 3 2 1 5 5 H 1.48494 * 109.47276 * 359.72895 * 3 2 1 6 6 H 1.48503 * 109.46558 * 119.72571 * 3 2 1 7 7 C 1.40040 * 120.00149 * 179.72698 * 2 1 3 8 8 H 1.07998 * 120.00474 * 355.31520 * 7 2 1 9 9 C 1.46380 * 119.99895 * 175.31347 * 7 2 1 10 10 O 1.21680 * 119.99770 * 6.40061 * 9 7 2 11 11 N 1.34775 * 120.00010 * 186.40222 * 9 7 2 12 12 C 1.47024 * 125.64776 * 359.69216 * 11 9 7 13 13 C 1.54335 * 107.26391 * 178.85208 * 12 11 9 14 14 C 1.55156 * 103.02057 * 338.14002 * 13 12 11 15 15 H 1.09002 * 111.00616 * 277.23316 * 14 13 12 16 16 N 1.46903 * 111.00529 * 153.38275 * 14 13 12 17 17 C 1.48532 * 110.99968 * 63.95367 * 16 14 13 18 18 C 1.54938 * 103.22972 * 159.72247 * 17 16 14 19 19 C 1.54600 * 102.91623 * 322.58611 * 18 17 16 20 20 C 1.47900 * 110.99910 * 181.34973 * 16 14 13 21 21 C 1.47428 * 125.64685 * 180.02562 * 11 9 7 22 22 H 0.97007 * 119.99855 * 185.08069 * 1 2 3 23 23 H 1.08998 * 109.88039 * 298.39707 * 12 11 9 24 24 H 1.08997 * 109.88486 * 59.56016 * 12 11 9 25 25 H 1.09001 * 110.84988 * 219.67518 * 13 12 11 26 26 H 1.08997 * 110.67053 * 96.52345 * 13 12 11 27 27 H 1.09004 * 110.66427 * 278.15803 * 17 16 14 28 28 H 1.09004 * 110.66737 * 41.28793 * 17 16 14 29 29 H 1.08996 * 110.72438 * 204.22698 * 18 17 16 30 30 H 1.08997 * 110.72333 * 80.93783 * 18 17 16 31 31 H 1.09001 * 110.30716 * 263.03981 * 19 18 17 32 32 H 1.09006 * 110.30395 * 140.87644 * 19 18 17 33 33 H 1.09000 * 109.91798 * 333.50763 * 20 16 14 34 34 H 1.08999 * 109.91805 * 94.60696 * 20 16 14 35 35 H 1.08989 * 110.36698 * 322.93141 * 21 11 9 36 36 H 1.09001 * 110.36348 * 85.14507 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.0994 1.6937 -1.2091 5 1 1.2755 2.7465 -0.0066 6 1 3.0893 1.6994 1.2159 7 6 2.0070 -1.2127 0.0058 8 1 1.4698 -2.1462 0.0866 9 6 3.4671 -1.2153 -0.0978 10 8 4.0807 -0.1649 -0.0715 11 7 4.1318 -2.3811 -0.2222 12 6 3.5190 -3.7170 -0.2611 13 6 4.6607 -4.7396 -0.4421 14 6 5.8017 -3.8849 -1.0544 15 1 5.6757 -3.7793 -2.1319 16 7 7.1170 -4.4551 -0.7336 17 6 7.2793 -5.7975 -1.3481 18 6 8.8160 -5.9946 -1.3686 19 6 9.3417 -4.5786 -1.6982 20 6 8.2055 -3.6226 -1.2900 21 6 5.5944 -2.5284 -0.3351 22 1 -0.4850 -0.8368 0.0744 23 1 2.9906 -3.9097 0.6726 24 1 2.8276 -3.7834 -1.1011 25 1 4.3645 -5.5345 -1.1265 26 1 4.9626 -5.1535 0.5200 27 1 6.8016 -6.5616 -0.7349 28 1 6.8766 -5.8083 -2.3610 29 1 9.1037 -6.7033 -2.1451 30 1 9.1759 -6.3223 -0.3933 31 1 9.5459 -4.4898 -2.7652 32 1 10.2414 -4.3653 -1.1209 33 1 7.8470 -3.0777 -2.1633 34 1 8.5598 -2.9213 -0.5346 35 1 6.0127 -1.7161 -0.9292 36 1 6.0511 -2.5480 0.6545 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041569419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:22 Heat of formation + Delta-G solvation = -47.006470 kcal Electronic energy + Delta-G solvation = -17303.392873 eV Core-core repulsion = 14593.444740 eV Total energy + Delta-G solvation = -2709.948133 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56733 -37.98616 -35.93850 -32.88529 -32.05456 -29.69209 -28.83321 -27.84671 -25.68729 -22.73778 -21.87343 -20.73289 -20.07391 -19.10514 -17.49637 -16.52731 -16.04749 -15.60437 -14.61699 -14.31887 -14.04350 -13.80432 -13.24435 -13.08668 -12.91812 -12.59784 -12.35292 -11.97945 -11.79828 -11.68648 -11.45225 -11.29783 -10.92867 -10.74866 -10.60399 -10.51258 -10.29467 -10.21782 -9.19263 -8.91612 -8.47666 -7.97035 -7.55289 -6.98856 -4.91444 3.61006 3.67420 3.78822 4.08550 4.32474 4.39947 4.47710 4.53577 4.66829 4.82811 4.90092 5.06232 5.16648 5.27690 5.37966 5.47054 5.54743 5.62876 5.64475 5.66714 5.75857 5.87282 5.93409 5.99049 6.04293 6.20427 6.30651 6.34892 6.48962 6.83734 6.99918 7.12999 7.69698 7.77844 8.17188 8.84483 9.04790 10.03487 10.34129 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048802 B = 0.005749 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.608393 B = 4869.508204 C = 5353.135551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.060 3.940 3 Si 1.133 2.867 4 H -0.288 1.288 5 H -0.323 1.323 6 H -0.288 1.288 7 C -0.591 4.591 8 H 0.072 0.928 9 C 0.567 3.433 10 O -0.615 6.615 11 N -0.637 5.637 12 C 0.123 3.877 13 C -0.122 4.122 14 C 0.059 3.941 15 H 0.055 0.945 16 N -0.507 5.507 17 C 0.035 3.965 18 C -0.123 4.123 19 C -0.131 4.131 20 C 0.033 3.967 21 C 0.125 3.875 22 H 0.277 0.723 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.830 -12.945 -3.442 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.158 4.158 3 Si 0.966 3.034 4 H -0.215 1.215 5 H -0.255 1.255 6 H -0.215 1.215 7 C -0.627 4.627 8 H 0.090 0.910 9 C 0.378 3.622 10 O -0.509 6.509 11 N -0.373 5.373 12 C -0.002 4.002 13 C -0.160 4.160 14 C -0.050 4.050 15 H 0.073 0.927 16 N -0.232 5.232 17 C -0.092 4.092 18 C -0.161 4.161 19 C -0.169 4.169 20 C -0.095 4.095 21 C 0.001 3.999 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.858 -10.827 -2.918 17.826 hybrid contribution -0.036 -2.012 -0.845 2.182 sum 13.822 -12.838 -3.763 19.236 Atomic orbital electron populations 1.70672 1.07546 1.31922 1.35842 1.27178 0.95341 1.04966 0.88285 0.82313 0.71212 0.70691 0.79138 1.21516 1.25489 1.21531 1.22056 0.89616 0.96387 1.54636 0.90962 1.18208 0.88482 0.79907 0.75555 1.90091 1.69540 1.29953 1.61281 1.48128 1.04688 1.05862 1.78617 1.21604 0.94848 0.82669 1.01033 1.22678 0.94506 0.97253 1.01560 1.23023 0.88679 0.95671 0.97647 0.92742 1.64753 1.01705 1.02152 1.54544 1.23209 0.96194 0.92052 0.97787 1.22475 0.95004 0.96667 1.01979 1.22403 0.98461 0.94953 1.01068 1.22871 0.91612 0.96188 0.98784 1.21784 0.84251 0.94428 0.99425 0.91239 0.92416 0.92542 0.91128 0.90130 0.89982 0.93858 0.91261 0.90755 0.91681 0.91044 0.93613 0.90079 0.91777 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.37 13.65 55.55 0.76 -23.61 16 2 C 0.06 1.76 5.52 -17.37 -0.10 1.66 16 3 Si 1.13 30.76 25.82 -169.99 -4.39 26.38 16 4 H -0.29 -7.98 6.99 56.52 0.39 -7.58 16 5 H -0.32 -8.37 7.11 56.52 0.40 -7.97 16 6 H -0.29 -7.95 7.10 56.52 0.40 -7.55 16 7 C -0.59 -17.14 9.47 -35.63 -0.34 -17.48 16 8 H 0.07 2.06 7.38 -52.49 -0.39 1.67 16 9 C 0.57 15.87 7.64 -12.99 -0.10 15.77 16 10 O -0.62 -18.51 12.36 5.21 0.06 -18.45 16 11 N -0.64 -14.60 3.33 -172.16 -0.57 -15.17 16 12 C 0.12 2.29 6.06 -3.06 -0.02 2.27 16 13 C -0.12 -1.74 5.92 -24.89 -0.15 -1.89 16 14 C 0.06 0.89 2.37 -65.55 -0.16 0.74 16 15 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 16 N -0.51 -6.58 5.15 -219.93 -1.13 -7.71 16 17 C 0.04 0.37 5.95 -1.90 -0.01 0.36 16 18 C -0.12 -1.07 7.06 -24.87 -0.18 -1.24 16 19 C -0.13 -1.20 6.93 -25.37 -0.18 -1.37 16 20 C 0.03 0.39 6.15 -2.75 -0.02 0.38 16 21 C 0.13 2.42 6.00 -2.52 -0.02 2.40 16 22 H 0.28 7.77 8.72 -40.82 -0.36 7.42 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.04 0.45 8.02 -51.93 -0.42 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.30 8.04 -51.94 -0.42 0.88 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -32.43 288.03 -8.03 -40.46 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -5.85 Total: -7.83 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.25 Total: 1.60 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.95 Total: -46.50 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.06 Total: -18.45 kcal Atomic # 14 Polarization: 30.76 SS G_CDS: -4.39 Total: 26.38 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.43 -8.03 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.549 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds