Wall clock time and date at job start Sun Mar 29 2020 21:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99335 * 2 1 4 4 H 1.48503 * 109.47003 * 239.72272 * 3 2 1 5 5 H 1.48494 * 109.47276 * 359.72895 * 3 2 1 6 6 H 1.48503 * 109.46558 * 119.72571 * 3 2 1 7 7 C 1.40040 * 120.00149 * 179.72698 * 2 1 3 8 8 H 1.07998 * 120.00474 * 355.31520 * 7 2 1 9 9 C 1.46380 * 119.99895 * 175.31347 * 7 2 1 10 10 O 1.21680 * 119.99770 * 6.40061 * 9 7 2 11 11 N 1.34775 * 120.00010 * 186.40222 * 9 7 2 12 12 C 1.47024 * 125.64776 * 359.69216 * 11 9 7 13 13 C 1.54335 * 107.26391 * 178.85208 * 12 11 9 14 14 C 1.55156 * 103.02057 * 338.14002 * 13 12 11 15 15 H 1.09002 * 111.00616 * 277.23316 * 14 13 12 16 16 N 1.46903 * 111.00529 * 153.38275 * 14 13 12 17 17 C 1.48532 * 110.99968 * 63.95367 * 16 14 13 18 18 C 1.54938 * 103.22972 * 159.72247 * 17 16 14 19 19 C 1.54600 * 102.91623 * 322.58611 * 18 17 16 20 20 C 1.47900 * 110.99910 * 181.34973 * 16 14 13 21 21 C 1.47428 * 125.64685 * 180.02562 * 11 9 7 22 22 H 0.97007 * 119.99855 * 185.08069 * 1 2 3 23 23 H 1.08998 * 109.88039 * 298.39707 * 12 11 9 24 24 H 1.08997 * 109.88486 * 59.56016 * 12 11 9 25 25 H 1.09001 * 110.84988 * 219.67518 * 13 12 11 26 26 H 1.08997 * 110.67053 * 96.52345 * 13 12 11 27 27 H 1.09004 * 110.66427 * 278.15803 * 17 16 14 28 28 H 1.09004 * 110.66737 * 41.28793 * 17 16 14 29 29 H 1.08996 * 110.72438 * 204.22698 * 18 17 16 30 30 H 1.08997 * 110.72333 * 80.93783 * 18 17 16 31 31 H 1.09001 * 110.30716 * 263.03981 * 19 18 17 32 32 H 1.09006 * 110.30395 * 140.87644 * 19 18 17 33 33 H 1.09000 * 109.91798 * 333.50763 * 20 16 14 34 34 H 1.08999 * 109.91805 * 94.60696 * 20 16 14 35 35 H 1.08989 * 110.36698 * 322.93141 * 21 11 9 36 36 H 1.09001 * 110.36348 * 85.14507 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.0994 1.6937 -1.2091 5 1 1.2755 2.7465 -0.0066 6 1 3.0893 1.6994 1.2159 7 6 2.0070 -1.2127 0.0058 8 1 1.4698 -2.1462 0.0866 9 6 3.4671 -1.2153 -0.0978 10 8 4.0807 -0.1649 -0.0715 11 7 4.1318 -2.3811 -0.2222 12 6 3.5190 -3.7170 -0.2611 13 6 4.6607 -4.7396 -0.4421 14 6 5.8017 -3.8849 -1.0544 15 1 5.6757 -3.7793 -2.1319 16 7 7.1170 -4.4551 -0.7336 17 6 7.2793 -5.7975 -1.3481 18 6 8.8160 -5.9946 -1.3686 19 6 9.3417 -4.5786 -1.6982 20 6 8.2055 -3.6226 -1.2900 21 6 5.5944 -2.5284 -0.3351 22 1 -0.4850 -0.8368 0.0744 23 1 2.9906 -3.9097 0.6726 24 1 2.8276 -3.7834 -1.1011 25 1 4.3645 -5.5345 -1.1265 26 1 4.9626 -5.1535 0.5200 27 1 6.8016 -6.5616 -0.7349 28 1 6.8766 -5.8083 -2.3610 29 1 9.1037 -6.7033 -2.1451 30 1 9.1759 -6.3223 -0.3933 31 1 9.5459 -4.4898 -2.7652 32 1 10.2414 -4.3653 -1.1209 33 1 7.8470 -3.0777 -2.1633 34 1 8.5598 -2.9213 -0.5346 35 1 6.0127 -1.7161 -0.9292 36 1 6.0511 -2.5480 0.6545 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041569419.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:22 Heat of formation + Delta-G solvation = -70.227527 kcal Electronic energy + Delta-G solvation = -17304.399813 eV Core-core repulsion = 14593.444740 eV Total energy + Delta-G solvation = -2710.955074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91249 -39.55059 -37.62235 -35.14938 -33.33939 -30.97066 -29.94381 -29.30561 -27.57923 -24.31492 -22.90356 -21.75483 -21.32074 -20.89173 -19.49519 -17.77004 -17.70568 -16.76510 -16.42084 -16.02658 -15.56117 -14.99689 -14.85110 -14.65691 -14.52531 -14.10874 -13.64444 -13.44357 -13.27375 -13.21800 -12.50749 -12.43812 -12.22160 -12.20706 -12.04082 -11.84926 -11.77780 -11.41242 -11.37469 -11.17652 -10.18600 -9.49391 -9.41913 -9.26116 -7.18304 1.39595 1.50460 1.91594 2.13786 2.28528 2.54492 3.05668 3.21666 3.36644 3.69091 3.75884 3.97374 4.00910 4.11570 4.26005 4.36352 4.45170 4.60794 4.64573 4.69158 4.78700 4.84000 4.90168 4.96279 4.99743 5.07956 5.13247 5.21627 5.23292 5.33153 5.46963 5.67356 5.90486 5.99347 6.06521 6.58292 7.01892 7.86415 8.06918 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.048802 B = 0.005749 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.608393 B = 4869.508204 C = 5353.135551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.030 3.970 3 Si 1.164 2.836 4 H -0.300 1.300 5 H -0.303 1.303 6 H -0.299 1.299 7 C -0.606 4.606 8 H 0.070 0.930 9 C 0.559 3.441 10 O -0.644 6.644 11 N -0.643 5.643 12 C 0.115 3.885 13 C -0.103 4.103 14 C 0.075 3.925 15 H 0.053 0.947 16 N -0.515 5.515 17 C 0.032 3.968 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.027 3.973 21 C 0.123 3.877 22 H 0.279 0.721 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.108 -15.004 -3.935 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.996 3.004 4 H -0.229 1.229 5 H -0.233 1.233 6 H -0.227 1.227 7 C -0.643 4.643 8 H 0.088 0.912 9 C 0.368 3.632 10 O -0.540 6.540 11 N -0.377 5.377 12 C -0.009 4.009 13 C -0.141 4.141 14 C -0.035 4.035 15 H 0.071 0.929 16 N -0.240 5.240 17 C -0.095 4.095 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.101 4.101 21 C -0.001 4.001 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.132 -12.937 -3.415 20.199 hybrid contribution -0.379 -1.437 -0.681 1.635 sum 14.753 -14.373 -4.096 21.000 Atomic orbital electron populations 1.70671 1.07594 1.32155 1.36655 1.27778 0.95742 1.06590 0.88327 0.81898 0.70534 0.70035 0.77910 1.22885 1.23296 1.22719 1.22195 0.90601 0.96323 1.55162 0.91181 1.18164 0.88508 0.81017 0.75513 1.90060 1.70095 1.31503 1.62302 1.48061 1.06615 1.06209 1.76788 1.21867 0.96540 0.81632 1.00814 1.22619 0.92079 0.96438 1.02977 1.22783 0.90506 0.93283 0.96890 0.92878 1.64745 1.00557 1.03470 1.55267 1.23344 0.97734 0.90426 0.98005 1.22482 0.93522 0.96592 1.02918 1.22394 0.97604 0.94567 1.01844 1.22935 0.92364 0.96715 0.98057 1.21914 0.81820 0.96703 0.99622 0.91067 0.92717 0.92788 0.87745 0.89047 0.88916 0.93427 0.89193 0.90490 0.90666 0.90146 0.94613 0.91102 0.93571 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.28 13.65 21.83 0.30 -48.98 16 2 C 0.03 1.81 5.52 85.30 0.47 2.28 16 3 Si 1.16 62.98 25.82 68.60 1.77 64.75 16 4 H -0.30 -16.76 6.99 99.48 0.70 -16.06 16 5 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 6 H -0.30 -16.58 7.10 99.48 0.71 -15.87 16 7 C -0.61 -35.56 9.47 24.83 0.24 -35.32 16 8 H 0.07 4.03 7.38 -2.91 -0.02 4.01 16 9 C 0.56 31.66 7.64 86.36 0.66 32.32 16 10 O -0.64 -39.39 12.36 -4.29 -0.05 -39.45 16 11 N -0.64 -29.45 3.33 -816.82 -2.72 -32.17 16 12 C 0.11 4.14 6.06 86.73 0.53 4.67 16 13 C -0.10 -2.66 5.92 31.79 0.19 -2.47 16 14 C 0.08 2.13 2.37 46.31 0.11 2.24 16 15 H 0.05 1.54 8.06 -2.39 -0.02 1.52 16 16 N -0.52 -12.19 5.15 -849.71 -4.37 -16.56 16 17 C 0.03 0.55 5.95 86.65 0.52 1.07 16 18 C -0.12 -1.61 7.06 31.80 0.22 -1.38 16 19 C -0.13 -1.96 6.93 31.47 0.22 -1.74 16 20 C 0.03 0.60 6.15 86.45 0.53 1.13 16 21 C 0.12 4.72 6.00 86.86 0.52 5.24 16 22 H 0.28 15.68 8.72 -92.70 -0.81 14.87 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.09 1.43 8.10 -2.38 -0.02 1.41 16 28 H 0.05 0.80 8.02 -2.39 -0.02 0.79 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.04 0.85 7.72 -2.39 -0.02 0.83 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -69.51 288.03 0.12 -69.39 By element: Atomic # 1 Polarization: -6.01 SS G_CDS: 0.99 Total: -5.02 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.20 Total: 8.04 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -6.79 Total: -97.72 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.05 Total: -39.45 kcal Atomic # 14 Polarization: 62.98 SS G_CDS: 1.77 Total: 64.75 kcal Total: -69.51 0.12 -69.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041569419.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.834 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds