Wall clock time and date at job start Sun Mar 29 2020 21:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48495 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46915 * 300.00289 * 3 2 1 6 6 H 1.48503 * 109.47032 * 59.99829 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 H 1.09006 * 110.43606 * 325.70194 * 12 11 9 14 14 C 1.54989 * 110.49049 * 88.24668 * 12 11 9 15 15 C 1.55498 * 104.78167 * 116.15875 * 14 12 11 16 16 N 1.47097 * 103.57994 * 336.09416 * 15 14 12 17 17 C 1.45660 * 116.54414 * 162.38752 * 16 15 14 18 18 C 1.53627 * 107.80353 * 177.31644 * 17 16 15 19 19 C 1.52822 * 110.69685 * 57.37165 * 18 17 16 20 20 C 1.53658 * 110.61210 * 306.25214 * 19 18 17 21 21 C 1.48724 * 103.70076 * 42.18935 * 16 15 14 22 22 H 1.08999 * 110.34070 * 73.85318 * 21 16 15 23 23 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 25 25 H 1.09002 * 110.34876 * 235.05274 * 14 12 11 26 26 H 1.09001 * 110.34674 * 357.32156 * 14 12 11 27 27 H 1.09008 * 110.62279 * 217.55184 * 15 14 12 28 28 H 1.08994 * 110.68809 * 94.66831 * 15 14 12 29 29 H 1.09002 * 109.79398 * 296.89171 * 17 16 15 30 30 H 1.08996 * 109.79273 * 57.73617 * 17 16 15 31 31 H 1.08996 * 109.23369 * 177.68804 * 18 17 16 32 32 H 1.08998 * 109.22823 * 297.06069 * 18 17 16 33 33 H 1.09000 * 109.24699 * 66.54446 * 19 18 17 34 34 H 1.08998 * 109.24453 * 185.99882 * 19 18 17 35 35 H 1.08996 * 109.84057 * 296.60717 * 20 19 18 36 36 H 1.09008 * 109.83492 * 175.64955 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 1 0.2951 -4.8212 0.5875 14 6 0.9071 -5.3713 -1.4363 15 6 1.6918 -6.7024 -1.6102 16 7 2.7699 -6.6005 -0.6146 17 6 3.4400 -7.8418 -0.2514 18 6 4.5627 -7.4970 0.7389 19 6 4.0006 -6.7749 1.9628 20 6 3.1738 -5.5518 1.5368 21 6 2.0911 -6.0381 0.5832 22 1 1.4700 -6.7975 1.0582 23 1 -0.4850 0.8400 -0.0004 24 1 2.9189 -3.6477 0.0070 25 1 -0.1625 -5.5408 -1.5602 26 1 1.2589 -4.6268 -2.1505 27 1 2.1045 -6.7762 -2.6165 28 1 1.0513 -7.5578 -1.3959 29 1 2.7289 -8.5212 0.2187 30 1 3.8629 -8.3071 -1.1417 31 1 5.0542 -8.4159 1.0585 32 1 5.2914 -6.8537 0.2457 33 1 3.3654 -7.4602 2.5241 34 1 4.8246 -6.4478 2.5969 35 1 3.8149 -4.8297 1.0312 36 1 2.7159 -5.0916 2.4125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042323498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:33 Heat of formation + Delta-G solvation = -39.874847 kcal Electronic energy + Delta-G solvation = -17637.976726 eV Core-core repulsion = 14928.337843 eV Total energy + Delta-G solvation = -2709.638883 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91259 -36.93673 -34.71995 -33.07932 -32.26573 -30.30586 -28.93685 -26.93014 -25.43386 -22.91479 -21.42530 -20.75081 -20.06599 -18.59694 -17.26986 -15.70315 -15.37979 -15.05779 -14.86113 -14.34284 -13.82098 -13.66863 -13.32892 -13.14812 -12.44750 -12.36111 -12.29268 -11.78729 -11.39228 -11.16471 -10.99274 -10.91485 -10.81794 -10.56106 -10.39599 -10.33808 -10.15426 -10.08899 -10.02634 -8.81020 -8.24186 -7.53135 -7.36920 -6.12699 -4.57201 3.16386 3.24667 3.29304 4.14033 4.16053 4.63742 4.77045 4.85365 4.96063 5.00664 5.25740 5.37296 5.41745 5.48971 5.51031 5.64355 5.71545 5.81118 5.90375 5.96167 6.03438 6.08364 6.20940 6.22061 6.31518 6.35803 6.54315 6.59011 6.77969 7.15238 7.41933 7.49449 8.04509 8.23590 8.43185 9.09054 9.65726 10.66987 10.87079 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.006420 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.356245 B = 4360.117692 C = 4772.926422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.583 6.583 11 N -0.751 5.751 12 C 0.163 3.837 13 H 0.081 0.919 14 C -0.132 4.132 15 C 0.044 3.956 16 N -0.522 5.522 17 C 0.055 3.945 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.101 4.101 21 C 0.057 3.943 22 H 0.051 0.949 23 H 0.266 0.734 24 H 0.383 0.617 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.412 -13.116 0.850 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.466 6.466 11 N -0.406 5.406 12 C 0.055 3.945 13 H 0.099 0.901 14 C -0.172 4.172 15 C -0.084 4.084 16 N -0.247 5.247 17 C -0.073 4.073 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.139 4.139 21 C -0.051 4.051 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.217 0.783 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.756 -12.709 0.640 14.408 hybrid contribution 0.274 0.110 0.181 0.346 sum 7.030 -12.599 0.821 14.451 Atomic orbital electron populations 1.70033 1.07023 1.26975 1.35819 1.25693 0.94570 1.00207 0.92660 0.86361 0.80558 0.81954 0.78130 1.18796 1.20240 1.20247 1.20928 0.93584 0.89476 1.54172 0.91493 1.18217 0.87191 0.82549 0.76141 1.90589 1.14145 1.86926 1.54971 1.46145 1.08636 1.04039 1.81787 1.20958 0.94861 0.84550 0.94139 0.90145 1.23134 0.98982 0.95759 0.99289 1.22888 0.91893 0.97371 0.96208 1.63880 1.27465 1.25235 1.08147 1.21996 0.96173 0.90823 0.98320 1.21572 0.97757 0.99998 0.95780 1.21606 0.99542 0.97403 0.97201 1.21400 0.96815 0.97190 0.98461 1.22713 0.94582 0.96582 0.91234 0.93157 0.92301 0.78327 0.91687 0.90386 0.90720 0.94829 0.95336 0.91161 0.92179 0.91189 0.92807 0.91981 0.90381 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.30 11.83 55.55 0.66 -22.64 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -15.52 9.54 -35.63 -0.34 -15.86 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.81 7.75 -12.99 -0.10 15.71 16 10 O -0.58 -18.86 14.70 5.20 0.08 -18.79 16 11 N -0.75 -16.92 4.54 -54.06 -0.25 -17.17 16 12 C 0.16 3.18 3.26 -66.75 -0.22 2.97 16 13 H 0.08 1.76 7.61 -51.93 -0.40 1.37 16 14 C -0.13 -2.36 6.87 -24.35 -0.17 -2.53 16 15 C 0.04 0.64 6.72 -2.39 -0.02 0.62 16 16 N -0.52 -7.59 4.84 -224.29 -1.09 -8.68 16 17 C 0.06 0.66 5.87 -4.17 -0.02 0.63 16 18 C -0.11 -1.24 6.06 -26.50 -0.16 -1.40 16 19 C -0.12 -1.40 5.95 -26.48 -0.16 -1.55 16 20 C -0.10 -1.46 5.06 -26.77 -0.14 -1.60 16 21 C 0.06 0.89 2.42 -66.95 -0.16 0.73 16 22 H 0.05 0.76 7.98 -51.93 -0.41 0.34 16 23 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 24 H 0.38 7.96 6.71 -40.82 -0.27 7.69 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.08 1.56 7.97 -51.93 -0.41 1.15 16 27 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.33 7.99 -51.93 -0.41 -0.08 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.22 6.44 -51.93 -0.33 0.88 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 LS Contribution 285.88 15.07 4.31 4.31 Total: -1.00 -32.90 285.88 -8.49 -41.38 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.60 Total: 6.11 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.58 Total: 0.12 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.67 Total: -48.48 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.08 Total: -18.79 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.90 -8.49 -41.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042323498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.509 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds