Wall clock time and date at job start Sun Mar 29 2020 21:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86800 * 120.00364 * 2 1 4 4 H 1.48495 * 109.47422 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46915 * 300.00289 * 3 2 1 6 6 H 1.48503 * 109.47032 * 59.99829 * 3 2 1 7 7 C 1.40052 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.46368 * 119.99965 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99926 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00188 * 180.27115 * 9 7 2 12 12 C 1.46500 * 120.00431 * 179.72417 * 11 9 7 13 13 H 1.09006 * 110.43606 * 325.70194 * 12 11 9 14 14 C 1.54989 * 110.49049 * 88.24668 * 12 11 9 15 15 C 1.55498 * 104.78167 * 116.15875 * 14 12 11 16 16 N 1.47097 * 103.57994 * 336.09416 * 15 14 12 17 17 C 1.45660 * 116.54414 * 162.38752 * 16 15 14 18 18 C 1.53627 * 107.80353 * 177.31644 * 17 16 15 19 19 C 1.52822 * 110.69685 * 57.37165 * 18 17 16 20 20 C 1.53658 * 110.61210 * 306.25214 * 19 18 17 21 21 C 1.48724 * 103.70076 * 42.18935 * 16 15 14 22 22 H 1.08999 * 110.34070 * 73.85318 * 21 16 15 23 23 H 0.96999 * 119.99868 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00112 * 359.72854 * 11 9 7 25 25 H 1.09002 * 110.34876 * 235.05274 * 14 12 11 26 26 H 1.09001 * 110.34674 * 357.32156 * 14 12 11 27 27 H 1.09008 * 110.62279 * 217.55184 * 15 14 12 28 28 H 1.08994 * 110.68809 * 94.66831 * 15 14 12 29 29 H 1.09002 * 109.79398 * 296.89171 * 17 16 15 30 30 H 1.08996 * 109.79273 * 57.73617 * 17 16 15 31 31 H 1.08996 * 109.23369 * 177.68804 * 18 17 16 32 32 H 1.08998 * 109.22823 * 297.06069 * 18 17 16 33 33 H 1.09000 * 109.24699 * 66.54446 * 19 18 17 34 34 H 1.08998 * 109.24453 * 185.99882 * 19 18 17 35 35 H 1.08996 * 109.84057 * 296.60717 * 20 19 18 36 36 H 1.09008 * 109.83492 * 175.64955 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6476 0.0066 12 6 1.2164 -4.9164 0.0127 13 1 0.2951 -4.8212 0.5875 14 6 0.9071 -5.3713 -1.4363 15 6 1.6918 -6.7024 -1.6102 16 7 2.7699 -6.6005 -0.6146 17 6 3.4400 -7.8418 -0.2514 18 6 4.5627 -7.4970 0.7389 19 6 4.0006 -6.7749 1.9628 20 6 3.1738 -5.5518 1.5368 21 6 2.0911 -6.0381 0.5832 22 1 1.4700 -6.7975 1.0582 23 1 -0.4850 0.8400 -0.0004 24 1 2.9189 -3.6477 0.0070 25 1 -0.1625 -5.5408 -1.5602 26 1 1.2589 -4.6268 -2.1505 27 1 2.1045 -6.7762 -2.6165 28 1 1.0513 -7.5578 -1.3959 29 1 2.7289 -8.5212 0.2187 30 1 3.8629 -8.3071 -1.1417 31 1 5.0542 -8.4159 1.0585 32 1 5.2914 -6.8537 0.2457 33 1 3.3654 -7.4602 2.5241 34 1 4.8246 -6.4478 2.5969 35 1 3.8149 -4.8297 1.0312 36 1 2.7159 -5.0916 2.4125 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042323498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:32 Heat of formation + Delta-G solvation = -63.996054 kcal Electronic energy + Delta-G solvation = -17639.022700 eV Core-core repulsion = 14928.337843 eV Total energy + Delta-G solvation = -2710.684857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22052 -38.93724 -36.04648 -34.78002 -34.28721 -31.83052 -30.16088 -28.70939 -27.13710 -23.99561 -22.57392 -22.54649 -21.44168 -20.08711 -19.25454 -17.52997 -16.89739 -16.66342 -16.03461 -15.86457 -15.23320 -14.99615 -14.86912 -14.35148 -14.18801 -14.06519 -13.45743 -13.25702 -13.01233 -12.89762 -12.65015 -12.58205 -12.16105 -12.05379 -11.92021 -11.89088 -11.46619 -11.29613 -11.17057 -10.93023 -9.81072 -9.47423 -9.24451 -8.26704 -6.82394 1.40478 1.40582 1.58531 2.26103 2.50158 3.01173 3.17871 3.57105 3.59075 3.81930 4.02168 4.08262 4.24286 4.27304 4.32560 4.38442 4.52818 4.62301 4.71708 4.80553 4.87336 4.92867 5.00860 5.08074 5.14199 5.19097 5.29638 5.34132 5.36481 5.51925 5.87669 5.96502 6.28217 6.34630 6.40212 6.89643 7.62252 8.54128 8.71599 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.006420 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.356245 B = 4360.117692 C = 4772.926422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.248 1.248 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.736 5.736 12 C 0.152 3.848 13 H 0.047 0.953 14 C -0.131 4.131 15 C 0.057 3.943 16 N -0.532 5.532 17 C 0.053 3.947 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.101 4.101 21 C 0.068 3.932 22 H 0.062 0.938 23 H 0.273 0.727 24 H 0.393 0.607 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.812 -14.163 0.919 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.171 1.171 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.610 4.610 8 H 0.102 0.898 9 C 0.344 3.656 10 O -0.521 6.521 11 N -0.390 5.390 12 C 0.045 3.955 13 H 0.065 0.935 14 C -0.171 4.171 15 C -0.071 4.071 16 N -0.257 5.257 17 C -0.075 4.075 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.140 4.140 21 C -0.040 4.040 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.228 0.772 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.203 -13.817 0.708 16.616 hybrid contribution -0.502 0.366 0.158 0.641 sum 8.701 -13.451 0.866 16.043 Atomic orbital electron populations 1.70197 1.09492 1.28733 1.36857 1.26945 0.95498 1.04866 0.91235 0.84996 0.79350 0.75546 0.78530 1.17095 1.19372 1.19282 1.21446 0.94574 0.90275 1.54714 0.89836 1.18571 0.86805 0.84365 0.75844 1.90541 1.16191 1.87997 1.57329 1.45796 1.08993 1.03915 1.80276 1.21123 0.94342 0.84639 0.95416 0.93509 1.23030 0.99498 0.97387 0.97196 1.22800 0.91791 0.95404 0.97112 1.63874 1.27201 1.27310 1.07315 1.22142 0.96326 0.89554 0.99442 1.21577 0.97267 1.00968 0.94952 1.21570 0.99560 0.96038 0.97961 1.21382 0.96620 0.98483 0.97470 1.22541 0.94437 0.95069 0.91981 0.92040 0.91679 0.77164 0.91997 0.93063 0.89246 0.92844 0.94400 0.89541 0.89465 0.91836 0.91823 0.90747 0.91751 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.41 11.83 21.84 0.26 -51.15 16 2 C 0.03 1.67 5.50 85.31 0.47 2.14 16 3 Si 1.00 41.88 29.56 68.60 2.03 43.91 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.57 -33.37 9.54 24.83 0.24 -33.13 16 8 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 9 C 0.54 32.13 7.75 86.36 0.67 32.80 16 10 O -0.63 -43.26 14.70 -4.33 -0.06 -43.32 16 11 N -0.74 -34.41 4.54 -443.18 -2.01 -36.42 16 12 C 0.15 6.16 3.26 45.76 0.15 6.31 16 13 H 0.05 2.19 7.61 -2.38 -0.02 2.17 16 14 C -0.13 -4.82 6.87 32.13 0.22 -4.60 16 15 C 0.06 1.54 6.72 87.13 0.59 2.12 16 16 N -0.53 -14.34 4.84 -863.52 -4.18 -18.52 16 17 C 0.05 1.07 5.87 86.75 0.51 1.58 16 18 C -0.11 -2.00 6.06 30.75 0.19 -1.82 16 19 C -0.11 -2.33 5.95 30.76 0.18 -2.15 16 20 C -0.10 -2.86 5.06 30.57 0.15 -2.71 16 21 C 0.07 2.08 2.42 44.40 0.11 2.19 16 22 H 0.06 1.76 7.98 -2.39 -0.02 1.74 16 23 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 24 H 0.39 16.70 6.71 -92.71 -0.62 16.08 16 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 2.13 7.97 -2.39 -0.02 2.11 16 27 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 0.72 7.99 -2.39 -0.02 0.70 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.97 6.44 -2.39 -0.02 1.96 16 36 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -74.40 285.88 -0.06 -74.46 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.44 Total: 28.32 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 3.47 Total: 2.72 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -5.93 Total: -106.09 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.06 Total: -43.32 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -74.40 -0.06 -74.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042323498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.465 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds