Wall clock time and date at job start Sun Mar 29 2020 21:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86806 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46967 * 270.00366 * 3 2 1 5 5 H 1.48500 * 109.47158 * 30.00100 * 3 2 1 6 6 H 1.48500 * 109.47135 * 150.00121 * 3 2 1 7 7 C 1.40045 * 120.00625 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99766 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99618 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00457 * 180.02562 * 9 7 2 12 12 C 1.46495 * 120.00502 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.54073 * 32.38099 * 12 11 9 14 14 C 1.54992 * 110.48893 * 269.76690 * 12 11 9 15 15 C 1.55194 * 104.93251 * 238.83003 * 14 12 11 16 16 N 1.47101 * 103.52078 * 336.00394 * 15 14 12 17 17 C 1.45667 * 116.53413 * 162.42463 * 16 15 14 18 18 C 1.53613 * 107.76845 * 177.29475 * 17 16 15 19 19 C 1.52826 * 110.70474 * 57.43405 * 18 17 16 20 20 C 1.53660 * 110.57656 * 306.19071 * 19 18 17 21 21 C 1.48723 * 103.70527 * 42.23225 * 16 15 14 22 22 H 1.09001 * 110.34324 * 74.47639 * 21 16 15 23 23 H 0.96995 * 120.00000 * 359.97438 * 1 2 3 24 24 H 0.97001 * 119.99495 * 359.97438 * 11 9 7 25 25 H 1.08999 * 110.34799 * 119.96609 * 14 12 11 26 26 H 1.08994 * 110.43534 * 357.73937 * 14 12 11 27 27 H 1.08996 * 110.61411 * 217.49267 * 15 14 12 28 28 H 1.08996 * 110.74163 * 94.57114 * 15 14 12 29 29 H 1.09002 * 109.79349 * 296.89154 * 17 16 15 30 30 H 1.08999 * 109.79106 * 57.68727 * 17 16 15 31 31 H 1.08998 * 109.26634 * 297.09894 * 18 17 16 32 32 H 1.09001 * 109.19688 * 177.72243 * 18 17 16 33 33 H 1.09002 * 109.25091 * 185.91843 * 19 18 17 34 34 H 1.09004 * 109.24913 * 66.46066 * 19 18 17 35 35 H 1.09007 * 109.83663 * 175.66029 * 20 19 18 36 36 H 1.08996 * 109.83980 * 296.55840 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4403 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2753 -2.4805 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9491 -3.6477 -0.0005 12 6 1.2167 -4.9164 -0.0011 13 1 0.2792 -4.8166 -0.5481 14 6 0.9501 -5.3895 1.4505 15 6 1.6281 -6.7821 1.5482 16 7 1.6690 -7.2434 0.1520 17 6 2.5898 -8.3318 -0.1470 18 6 2.4205 -8.6950 -1.6300 19 6 2.6742 -7.4766 -2.5170 20 6 1.7916 -6.2971 -2.0798 21 6 2.0755 -6.0313 -0.6078 22 1 3.1360 -5.8284 -0.4585 23 1 -0.4850 0.8400 0.0004 24 1 2.9191 -3.6476 -0.0009 25 1 -0.1215 -5.4763 1.6301 26 1 1.3985 -4.6987 2.1644 27 1 1.0296 -7.4584 2.1585 28 1 2.6364 -6.6930 1.9525 29 1 3.6144 -8.0105 0.0403 30 1 2.3543 -9.1957 0.4746 31 1 1.4060 -9.0565 -1.7982 32 1 3.1289 -9.4817 -1.8895 33 1 2.4461 -7.7318 -3.5519 34 1 3.7227 -7.1886 -2.4406 35 1 2.0366 -5.4135 -2.6692 36 1 0.7404 -6.5517 -2.2148 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042323501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:35 Heat of formation + Delta-G solvation = -43.595407 kcal Electronic energy + Delta-G solvation = -17465.255421 eV Core-core repulsion = 14755.455203 eV Total energy + Delta-G solvation = -2709.800218 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86841 -37.05594 -34.78167 -33.02026 -32.27595 -30.62388 -28.90553 -26.93317 -25.34916 -22.94298 -21.43830 -20.86183 -19.76116 -19.09960 -17.17097 -15.75623 -15.42204 -15.07277 -14.83937 -14.41310 -13.86610 -13.63944 -13.25634 -13.18672 -12.61577 -12.30816 -12.26366 -12.03977 -11.34688 -11.16248 -11.10618 -10.92996 -10.79288 -10.65066 -10.46201 -10.35620 -10.20439 -10.16765 -10.00950 -8.83640 -8.28002 -7.58113 -7.46917 -6.16439 -4.62217 3.14981 3.21808 3.25062 4.02267 4.16346 4.59534 4.76665 4.82470 4.92765 5.01602 5.26111 5.34578 5.41320 5.48763 5.50649 5.58494 5.73570 5.78769 5.85801 5.88117 5.98650 6.06519 6.15631 6.27323 6.29283 6.32079 6.52738 6.67221 6.74869 7.10357 7.36713 7.45100 7.95021 8.15346 8.35916 9.04504 9.56456 10.62610 10.81669 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042487 B = 0.005734 C = 0.005457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.866477 B = 4881.603034 C = 5130.245689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.556 3.444 10 O -0.578 6.578 11 N -0.759 5.759 12 C 0.163 3.837 13 H 0.089 0.911 14 C -0.132 4.132 15 C 0.044 3.956 16 N -0.524 5.524 17 C 0.055 3.945 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.104 4.104 21 C 0.061 3.939 22 H 0.050 0.950 23 H 0.268 0.732 24 H 0.378 0.622 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -13.445 -1.168 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.414 5.414 12 C 0.055 3.945 13 H 0.107 0.893 14 C -0.172 4.172 15 C -0.084 4.084 16 N -0.249 5.249 17 C -0.073 4.073 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.142 4.142 21 C -0.048 4.048 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.209 0.791 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.000 -13.558 -1.300 14.509 hybrid contribution 1.825 0.973 0.349 2.097 sum 6.825 -12.585 -0.951 14.348 Atomic orbital electron populations 1.70019 1.07021 1.27201 1.35420 1.25692 0.94591 1.00216 0.92645 0.86399 0.80148 0.81540 0.78804 1.19765 1.20476 1.18983 1.20887 0.93525 0.89475 1.54455 0.91556 1.18204 0.87233 0.82395 0.76189 1.90601 1.14035 1.86766 1.54693 1.46215 1.08221 1.04679 1.82273 1.20964 0.96019 0.83453 0.94046 0.89310 1.23052 1.01020 0.94294 0.98842 1.22851 0.98987 0.97053 0.89488 1.63852 1.48492 1.05730 1.06850 1.22003 0.93825 0.94688 0.96802 1.21573 1.02130 0.97487 0.93908 1.21595 0.99645 0.95442 0.99018 1.21484 1.00617 0.97693 0.94430 1.22664 0.97600 0.90250 0.94297 0.93217 0.92142 0.79098 0.91159 0.90957 0.90728 0.94646 0.95180 0.91075 0.91266 0.92097 0.92013 0.92623 0.91189 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.83 55.55 0.66 -22.47 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.45 9.54 -35.63 -0.34 -15.79 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 15.77 7.75 -12.99 -0.10 15.67 16 10 O -0.58 -18.71 14.67 5.20 0.08 -18.64 16 11 N -0.76 -16.98 5.04 -54.07 -0.27 -17.25 16 12 C 0.16 3.20 3.04 -66.75 -0.20 3.00 16 13 H 0.09 2.02 7.41 -51.93 -0.38 1.64 16 14 C -0.13 -2.38 6.84 -24.52 -0.17 -2.54 16 15 C 0.04 0.64 6.71 -2.55 -0.02 0.62 16 16 N -0.52 -7.60 4.84 -224.50 -1.09 -8.68 16 17 C 0.06 0.66 5.87 -4.17 -0.02 0.63 16 18 C -0.11 -1.22 6.05 -26.50 -0.16 -1.38 16 19 C -0.12 -1.39 5.95 -26.48 -0.16 -1.54 16 20 C -0.10 -1.51 5.64 -26.77 -0.15 -1.67 16 21 C 0.06 0.96 2.18 -66.95 -0.15 0.81 16 22 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 23 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 24 H 0.38 7.53 8.40 -40.82 -0.34 7.18 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.07 1.38 7.97 -51.93 -0.41 0.96 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.36 7.98 -51.93 -0.41 -0.06 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 289.31 15.07 4.36 4.36 Total: -1.00 -32.84 289.31 -8.58 -41.42 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.73 Total: 5.90 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.56 Total: 0.19 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.70 Total: -48.40 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.08 Total: -18.64 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.84 -8.58 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042323501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.178 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds