Wall clock time and date at job start Sun Mar 29 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 N 1.46499 * 109.46952 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99830 * 269.55663 * 4 3 2 6 6 H 1.07996 * 119.99908 * 322.08250 * 5 4 3 7 7 C 1.38819 * 119.99635 * 142.08572 * 5 4 3 8 8 N 1.31612 * 119.99654 * 156.99337 * 7 5 4 9 9 Si 1.86801 * 119.99992 * 336.99076 * 7 5 4 10 10 H 1.48495 * 109.46957 * 95.70409 * 9 7 5 11 11 H 1.48503 * 109.46973 * 215.70241 * 9 7 5 12 12 H 1.48497 * 109.47389 * 335.70013 * 9 7 5 13 13 C 1.46494 * 120.00170 * 89.55614 * 4 3 2 14 14 C 1.50704 * 109.47223 * 89.99947 * 13 4 3 15 15 N 1.30253 * 125.61870 * 89.99766 * 14 13 4 16 16 C 1.34484 * 108.69881 * 179.97438 * 15 14 13 17 17 C 1.50701 * 126.16469 * 180.02562 * 16 15 14 18 18 C 1.34329 * 107.66716 * 0.02562 * 16 15 14 19 19 C 1.50699 * 126.43897 * 180.02562 * 18 16 15 20 20 O 1.33973 * 125.61693 * 270.28959 * 14 13 4 21 21 H 1.09005 * 109.47308 * 299.99915 * 1 2 3 22 22 H 1.09004 * 109.47527 * 59.99613 * 1 2 3 23 23 H 1.09005 * 109.47536 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47008 * 240.00540 * 2 1 3 25 25 H 1.08994 * 109.47423 * 120.00292 * 2 1 3 26 26 H 1.08996 * 109.46729 * 60.00426 * 3 2 1 27 27 H 1.08994 * 109.47229 * 300.00411 * 3 2 1 28 28 H 0.96999 * 120.00132 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47210 * 330.00239 * 13 4 3 30 30 H 1.08999 * 109.47177 * 209.99936 * 13 4 3 31 31 H 1.08996 * 109.46905 * 270.00362 * 17 16 15 32 32 H 1.09001 * 109.46920 * 30.00356 * 17 16 15 33 33 H 1.08999 * 109.46742 * 150.00072 * 17 16 15 34 34 H 1.08996 * 109.47309 * 89.99999 * 19 18 16 35 35 H 1.09007 * 109.46818 * 209.99983 * 19 18 16 36 36 H 1.08999 * 109.47502 * 329.99452 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 1.4515 1.1851 6 1 3.8214 2.0326 2.0174 7 6 5.3586 0.7137 1.3170 8 7 6.2458 1.0442 2.2312 9 14 5.6716 -0.7482 0.1970 10 1 6.5085 -0.3207 -0.9527 11 1 6.3788 -1.8108 0.9561 12 1 4.3763 -1.2754 -0.3025 13 6 4.2369 1.4329 -1.2695 14 6 4.4879 2.8503 -1.7155 15 7 5.5315 3.5679 -1.4109 16 6 5.4070 4.7764 -1.9877 17 6 6.3921 5.9128 -1.8925 18 6 4.2464 4.7878 -2.6638 19 6 3.6891 5.9353 -3.4661 20 8 3.6719 3.5819 -2.4861 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 7.0621 0.5285 2.3237 29 1 3.6475 0.9133 -2.0250 30 1 5.1894 0.9200 -1.1357 31 1 6.1457 6.5362 -1.0330 32 1 7.3988 5.5121 -1.7741 33 1 6.3443 6.5121 -2.8017 34 1 4.0386 5.8622 -4.4960 35 1 2.5999 5.8960 -3.4484 36 1 4.0256 6.8779 -3.0343 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:58 Heat of formation + Delta-G solvation = 31.312885 kcal Electronic energy + Delta-G solvation = -17446.066726 eV Core-core repulsion = 14739.514775 eV Total energy + Delta-G solvation = -2706.551951 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.58317 -36.59332 -34.49615 -33.21116 -32.42933 -31.20987 -28.89607 -27.80945 -25.83526 -24.18056 -22.22764 -21.19117 -20.19923 -19.77598 -17.13097 -16.21052 -15.68850 -15.37473 -14.56232 -14.19161 -13.90752 -13.74088 -13.13880 -12.90646 -12.84164 -12.65169 -12.58077 -12.43715 -12.15446 -11.80657 -11.51247 -11.28344 -10.85224 -10.77958 -10.55140 -10.22925 -10.17752 -9.90902 -9.63097 -9.59157 -8.56495 -7.90987 -7.04620 -6.02775 -3.46866 2.05980 3.28022 3.30913 3.38705 3.45666 3.49627 4.48578 4.71498 4.97289 5.13485 5.26942 5.31135 5.42412 5.51635 5.58424 5.65924 5.74595 5.80515 5.88619 5.91919 6.04173 6.09678 6.14486 6.31214 6.36351 6.46384 6.48906 6.60374 6.69715 6.83037 7.01651 7.04250 7.95795 8.33811 8.60241 8.85925 9.63871 9.98295 11.12109 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.009736 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.668927 B = 2875.097956 C = 3849.706151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.148 3.852 4 N -0.583 5.583 5 C -0.278 4.278 6 H 0.080 0.920 7 C 0.051 3.949 8 N -0.883 5.883 9 Si 0.862 3.138 10 H -0.281 1.281 11 H -0.295 1.295 12 H -0.262 1.262 13 C 0.219 3.781 14 C 0.199 3.801 15 N -0.470 5.470 16 C -0.016 4.016 17 C -0.066 4.066 18 C -0.088 4.088 19 C -0.056 4.056 20 O -0.210 6.210 21 H 0.051 0.949 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 5.119 -10.505 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.023 3.977 4 N -0.303 5.303 5 C -0.406 4.406 6 H 0.097 0.903 7 C -0.152 4.152 8 N -0.522 5.522 9 Si 0.691 3.309 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.186 1.186 13 C 0.090 3.910 14 C -0.011 4.011 15 N -0.198 5.198 16 C -0.136 4.136 17 C -0.123 4.123 18 C -0.142 4.142 19 C -0.113 4.113 20 O -0.098 6.098 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.672 4.853 -9.994 12.474 hybrid contribution -0.154 -0.513 -0.848 1.003 sum -5.826 4.339 -10.842 13.050 Atomic orbital electron populations 1.21723 0.96974 1.00660 1.01103 1.22095 0.94013 1.00153 1.02146 1.21033 0.83103 0.94042 0.99554 1.44219 1.00936 1.83936 1.01242 1.18689 1.06742 1.25007 0.90160 0.90293 1.25399 0.96205 0.97432 0.96145 1.69878 1.07969 1.38586 1.35744 0.87129 0.78540 0.84645 0.80610 1.20844 1.22293 1.18593 1.20186 0.98978 0.83022 0.88771 1.28678 0.84241 0.98469 0.89738 1.70476 1.24731 1.02692 1.21947 1.21558 0.96594 0.95552 0.99904 1.20024 0.97273 0.93400 1.01628 1.22927 0.96098 0.87911 1.07240 1.20079 1.01282 0.92048 0.97925 1.84398 1.46855 1.22481 1.56088 0.93018 0.93441 0.93559 0.93055 0.91408 0.92645 0.94143 0.92497 0.91224 0.88717 0.91180 0.90883 0.91536 0.90786 0.91028 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.15 0.37 -1.70 16 2 C -0.14 -2.58 6.26 -26.73 -0.17 -2.74 16 3 C 0.15 2.96 5.67 -4.04 -0.02 2.94 16 4 N -0.58 -14.02 2.05 -174.61 -0.36 -14.38 16 5 C -0.28 -7.82 9.90 -15.05 -0.15 -7.96 16 6 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 7 C 0.05 1.47 5.29 -17.43 -0.09 1.38 16 8 N -0.88 -27.14 13.97 55.49 0.78 -26.37 16 9 Si 0.86 21.62 25.10 -169.99 -4.27 17.35 16 10 H -0.28 -6.96 6.68 56.52 0.38 -6.58 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.22 5.00 5.14 -5.19 -0.03 4.98 16 14 C 0.20 4.57 7.93 -12.95 -0.10 4.47 16 15 N -0.47 -11.36 11.29 -7.35 -0.08 -11.44 16 16 C -0.02 -0.31 7.11 -82.81 -0.59 -0.90 16 17 C -0.07 -0.98 10.05 36.01 0.36 -0.62 16 18 C -0.09 -1.58 7.39 -35.69 -0.26 -1.85 16 19 C -0.06 -0.66 10.04 36.01 0.36 -0.30 16 20 O -0.21 -4.32 10.78 5.35 0.06 -4.27 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 27 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.10 2.34 3.37 -51.93 -0.18 2.17 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 36 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -32.84 301.54 -5.28 -38.12 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -5.63 Total: -1.25 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.32 Total: -2.31 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.33 Total: -52.19 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.06 Total: -4.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.27 Total: 17.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.84 -5.28 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.430 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds