Wall clock time and date at job start Sun Mar 29 2020 22:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47085 * 2 1 4 4 N 1.46499 * 109.46952 * 180.02562 * 3 2 1 5 5 C 1.36945 * 119.99830 * 269.55663 * 4 3 2 6 6 H 1.07996 * 119.99908 * 322.08250 * 5 4 3 7 7 C 1.38819 * 119.99635 * 142.08572 * 5 4 3 8 8 N 1.31612 * 119.99654 * 156.99337 * 7 5 4 9 9 Si 1.86801 * 119.99992 * 336.99076 * 7 5 4 10 10 H 1.48495 * 109.46957 * 95.70409 * 9 7 5 11 11 H 1.48503 * 109.46973 * 215.70241 * 9 7 5 12 12 H 1.48497 * 109.47389 * 335.70013 * 9 7 5 13 13 C 1.46494 * 120.00170 * 89.55614 * 4 3 2 14 14 C 1.50704 * 109.47223 * 89.99947 * 13 4 3 15 15 N 1.30253 * 125.61870 * 89.99766 * 14 13 4 16 16 C 1.34484 * 108.69881 * 179.97438 * 15 14 13 17 17 C 1.50701 * 126.16469 * 180.02562 * 16 15 14 18 18 C 1.34329 * 107.66716 * 0.02562 * 16 15 14 19 19 C 1.50699 * 126.43897 * 180.02562 * 18 16 15 20 20 O 1.33973 * 125.61693 * 270.28959 * 14 13 4 21 21 H 1.09005 * 109.47308 * 299.99915 * 1 2 3 22 22 H 1.09004 * 109.47527 * 59.99613 * 1 2 3 23 23 H 1.09005 * 109.47536 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47008 * 240.00540 * 2 1 3 25 25 H 1.08994 * 109.47423 * 120.00292 * 2 1 3 26 26 H 1.08996 * 109.46729 * 60.00426 * 3 2 1 27 27 H 1.08994 * 109.47229 * 300.00411 * 3 2 1 28 28 H 0.96999 * 120.00132 * 179.97438 * 8 7 5 29 29 H 1.08996 * 109.47210 * 330.00239 * 13 4 3 30 30 H 1.08999 * 109.47177 * 209.99936 * 13 4 3 31 31 H 1.08996 * 109.46905 * 270.00362 * 17 16 15 32 32 H 1.09001 * 109.46920 * 30.00356 * 17 16 15 33 33 H 1.08999 * 109.46742 * 150.00072 * 17 16 15 34 34 H 1.08996 * 109.47309 * 89.99999 * 19 18 16 35 35 H 1.09007 * 109.46818 * 209.99983 * 19 18 16 36 36 H 1.08999 * 109.47502 * 329.99452 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 1.4515 1.1851 6 1 3.8214 2.0326 2.0174 7 6 5.3586 0.7137 1.3170 8 7 6.2458 1.0442 2.2312 9 14 5.6716 -0.7482 0.1970 10 1 6.5085 -0.3207 -0.9527 11 1 6.3788 -1.8108 0.9561 12 1 4.3763 -1.2754 -0.3025 13 6 4.2369 1.4329 -1.2695 14 6 4.4879 2.8503 -1.7155 15 7 5.5315 3.5679 -1.4109 16 6 5.4070 4.7764 -1.9877 17 6 6.3921 5.9128 -1.8925 18 6 4.2464 4.7878 -2.6638 19 6 3.6891 5.9353 -3.4661 20 8 3.6719 3.5819 -2.4861 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 7.0621 0.5285 2.3237 29 1 3.6475 0.9133 -2.0250 30 1 5.1894 0.9200 -1.1357 31 1 6.1457 6.5362 -1.0330 32 1 7.3988 5.5121 -1.7741 33 1 6.3443 6.5121 -2.8017 34 1 4.0386 5.8622 -4.4960 35 1 2.5999 5.8960 -3.4484 36 1 4.0256 6.8779 -3.0343 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:58 Heat of formation + Delta-G solvation = 7.723888 kcal Electronic energy + Delta-G solvation = -17447.089622 eV Core-core repulsion = 14739.514775 eV Total energy + Delta-G solvation = -2707.574847 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.15037 -38.37807 -36.03481 -34.73901 -34.13725 -32.96992 -30.10045 -29.41101 -27.59698 -25.63641 -23.90163 -22.79177 -21.72735 -21.41139 -19.13010 -17.81577 -17.33693 -17.23107 -16.22283 -15.75891 -15.49242 -15.10119 -14.69429 -14.47293 -14.17818 -14.14349 -13.99594 -13.74523 -13.34928 -13.12296 -12.90982 -12.86079 -12.54153 -12.33604 -12.20992 -12.11762 -11.84369 -11.56519 -11.39208 -11.23821 -10.70646 -9.37729 -9.00823 -8.24552 -5.67200 0.54501 1.28801 1.37924 1.48873 1.76251 1.86983 2.38839 2.97425 3.27380 3.32792 3.86955 3.99034 4.17674 4.21717 4.31192 4.42128 4.49221 4.62261 4.67980 4.72872 4.74068 4.76036 4.85183 4.89482 5.00021 5.14404 5.22608 5.26184 5.28043 5.40216 5.54625 5.57039 5.87326 6.12226 6.82881 7.01206 7.49896 7.89664 8.94686 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.009736 C = 0.007272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.668927 B = 2875.097956 C = 3849.706151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.146 3.854 4 N -0.595 5.595 5 C -0.267 4.267 6 H 0.034 0.966 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.928 3.072 10 H -0.278 1.278 11 H -0.300 1.300 12 H -0.236 1.236 13 C 0.220 3.780 14 C 0.173 3.827 15 N -0.516 5.516 16 C -0.054 4.054 17 C -0.062 4.062 18 C -0.070 4.070 19 C -0.056 4.056 20 O -0.212 6.212 21 H 0.052 0.948 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.264 0.736 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 5.684 -13.489 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.022 3.978 4 N -0.316 5.316 5 C -0.397 4.397 6 H 0.052 0.948 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.755 3.245 10 H -0.205 1.205 11 H -0.228 1.228 12 H -0.158 1.158 13 C 0.091 3.909 14 C -0.037 4.037 15 N -0.247 5.247 16 C -0.174 4.174 17 C -0.119 4.119 18 C -0.123 4.123 19 C -0.112 4.112 20 O -0.100 6.100 21 H 0.071 0.929 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.438 5.422 -13.014 15.940 hybrid contribution 0.329 -0.468 0.025 0.573 sum -7.108 4.953 -12.989 15.613 Atomic orbital electron populations 1.21655 0.93794 1.02132 1.02072 1.21983 0.96752 0.97857 1.01166 1.21166 0.80829 0.95866 0.99898 1.44277 1.02377 1.84550 1.00383 1.18454 1.06730 1.23603 0.90866 0.94810 1.26039 0.96034 1.00033 0.98173 1.70014 1.08869 1.40182 1.38807 0.86073 0.79412 0.80506 0.78524 1.20529 1.22799 1.15843 1.20095 0.98413 0.83474 0.88879 1.28301 0.85032 0.98785 0.91570 1.70418 1.26027 1.05095 1.23156 1.22312 0.98836 0.95459 1.00751 1.20157 0.95435 0.92320 1.03970 1.24095 0.95065 0.87719 1.05415 1.20433 1.02081 0.90187 0.98493 1.84372 1.46528 1.23486 1.55590 0.92861 0.91700 0.91854 0.92502 0.93877 0.93894 0.92113 0.92687 0.87554 0.90920 0.90747 0.92041 0.87311 0.87967 0.89676 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.78 16 2 C -0.14 -4.67 6.26 30.59 0.19 -4.48 16 3 C 0.15 5.74 5.67 86.38 0.49 6.23 16 4 N -0.59 -28.72 2.05 -706.35 -1.45 -30.17 16 5 C -0.27 -15.64 9.90 84.03 0.83 -14.80 16 6 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 7 C 0.00 -0.28 5.29 84.86 0.45 0.17 16 8 N -0.94 -60.38 13.97 21.65 0.30 -60.08 16 9 Si 0.93 45.74 25.10 68.60 1.72 47.47 16 10 H -0.28 -13.45 6.68 99.48 0.66 -12.78 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 12 H -0.24 -10.47 7.11 99.48 0.71 -9.76 16 13 C 0.22 9.86 5.14 85.64 0.44 10.30 16 14 C 0.17 7.90 7.93 88.34 0.70 8.60 16 15 N -0.52 -25.25 11.29 -291.97 -3.30 -28.54 16 16 C -0.05 -2.08 7.11 41.26 0.29 -1.78 16 17 C -0.06 -1.73 10.05 71.24 0.72 -1.02 16 18 C -0.07 -2.32 7.39 24.79 0.18 -2.14 16 19 C -0.06 -1.05 10.04 71.24 0.72 -0.33 16 20 O -0.21 -8.35 10.78 -3.76 -0.04 -8.39 16 21 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 27 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 28 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 29 H 0.11 3.88 8.07 -2.39 -0.02 3.86 16 30 H 0.07 3.58 3.37 -2.39 -0.01 3.57 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 2.05 7.79 -2.39 -0.02 2.03 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.11 1.56 7.79 -2.39 -0.02 1.54 16 Total: -1.00 -75.81 301.54 3.97 -71.85 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.01 Total: 9.90 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.72 Total: -2.03 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -4.44 Total: -118.79 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.04 Total: -8.39 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.72 Total: 47.47 kcal Total: -75.81 3.97 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.572 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds