Wall clock time and date at job start Sun Mar 29 2020 21:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99991 * 2 1 4 4 H 1.48505 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46969 * 300.00010 * 3 2 1 6 6 H 1.48494 * 109.46890 * 59.99890 * 3 2 1 7 7 C 1.38810 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99781 * 197.37673 * 7 2 1 9 9 N 1.36929 * 120.00169 * 17.37899 * 7 2 1 10 10 C 1.46930 * 120.63091 * 27.65618 * 9 7 2 11 11 C 1.53188 * 108.77516 * 126.41472 * 10 9 7 12 12 C 1.53040 * 109.31517 * 54.63637 * 11 10 9 13 13 C 1.53044 * 109.53926 * 298.63402 * 12 11 10 14 14 H 1.09005 * 109.52441 * 301.39815 * 13 12 11 15 15 C 1.50693 * 109.49785 * 181.31495 * 13 12 11 16 16 O 1.21280 * 120.00343 * 0.16405 * 15 13 12 17 17 N 1.34779 * 119.99779 * 180.16538 * 15 13 12 18 18 C 1.46503 * 120.00093 * 179.72681 * 17 15 13 19 19 C 1.53000 * 117.49702 * 223.89560 * 18 17 15 20 20 C 1.52995 * 117.50117 * 155.27054 * 18 17 15 21 21 C 1.46930 * 120.63099 * 207.67950 * 9 7 2 22 22 H 0.97000 * 120.00311 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.58458 * 246.20021 * 10 9 7 24 24 H 1.09001 * 109.58328 * 6.63050 * 10 9 7 25 25 H 1.08999 * 109.50075 * 174.58883 * 11 10 9 26 26 H 1.09006 * 109.49759 * 294.65140 * 11 10 9 27 27 H 1.09002 * 109.46266 * 178.61692 * 12 11 10 28 28 H 1.08995 * 109.46221 * 58.65417 * 12 11 10 29 29 H 0.96999 * 120.00105 * 359.97438 * 17 15 13 30 30 H 1.08999 * 115.54993 * 9.59786 * 18 17 15 31 31 H 1.08998 * 117.50301 * 359.97438 * 19 18 17 32 32 H 1.08996 * 117.49685 * 145.02072 * 19 18 17 33 33 H 1.08996 * 117.50100 * 214.97872 * 20 18 17 34 34 H 1.09006 * 117.49741 * 359.97438 * 20 18 17 35 35 H 1.09000 * 109.58634 * 113.79799 * 21 9 7 36 36 H 1.09000 * 109.58697 * 353.37397 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2799 9 7 1.3725 -2.3611 -0.3531 10 6 0.2279 -2.3347 -1.2741 11 6 0.5009 -3.3050 -2.4277 12 6 0.8188 -4.6901 -1.8597 13 6 2.0745 -4.6102 -0.9885 14 1 2.9087 -4.2405 -1.5848 15 6 2.4051 -5.9805 -0.4559 16 8 1.7074 -6.9289 -0.7468 17 7 3.4764 -6.1522 0.3438 18 6 3.7945 -7.4833 0.8665 19 6 4.1864 -7.5879 2.3418 20 6 5.2482 -7.7614 1.2539 21 6 1.8194 -3.6546 0.1815 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6742 -2.6411 -0.7446 24 1 0.0987 -1.3264 -1.6675 25 1 -0.3799 -3.3673 -3.0669 26 1 1.3492 -2.9470 -3.0112 27 1 0.9893 -5.3883 -2.6792 28 1 -0.0203 -5.0365 -1.2564 29 1 4.0347 -5.3938 0.5762 30 1 3.2216 -8.3058 0.4382 31 1 4.2080 -6.6663 2.9234 32 1 3.8714 -8.4792 2.8842 33 1 5.6317 -8.7668 1.0808 34 1 5.9681 -6.9540 1.1195 35 1 1.0470 -4.0687 0.8296 36 1 2.7401 -3.5172 0.7485 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051046154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:37 Heat of formation + Delta-G solvation = -0.799324 kcal Electronic energy + Delta-G solvation = -17275.839769 eV Core-core repulsion = 14567.895328 eV Total energy + Delta-G solvation = -2707.944441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.82839 -37.50760 -36.55458 -33.13665 -32.68897 -30.45018 -29.90534 -25.26615 -23.84607 -22.51779 -22.10236 -21.48582 -20.34489 -19.04197 -17.12329 -16.58685 -16.18608 -14.90796 -14.81457 -14.59390 -14.03934 -13.70555 -13.36481 -12.93059 -12.82666 -12.47288 -12.37598 -11.74363 -11.67846 -11.34787 -11.11734 -10.88198 -10.64479 -10.61673 -10.29942 -10.17486 -9.98709 -9.87182 -9.48510 -9.29545 -8.68175 -8.50345 -6.73865 -5.83030 -3.26540 2.84865 3.24554 3.34417 3.42386 3.44081 3.84568 4.44662 4.68640 4.84948 4.88468 5.01595 5.31877 5.37829 5.47288 5.56715 5.63054 5.69987 5.82912 5.93412 5.99154 6.07372 6.25825 6.36595 6.54463 6.60802 6.66978 6.72600 6.86218 6.88933 7.38853 7.64240 7.66243 7.75395 8.39123 8.46349 9.15670 9.78477 10.35358 11.25230 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.006334 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.381123 B = 4419.330631 C = 5130.287272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.143 4.143 12 C -0.087 4.087 13 C -0.124 4.124 14 H 0.094 0.906 15 C 0.528 3.472 16 O -0.547 6.547 17 N -0.707 5.707 18 C 0.083 3.917 19 C -0.196 4.196 20 C -0.193 4.193 21 C 0.160 3.840 22 H 0.254 0.746 23 H 0.019 0.981 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.404 0.596 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.023 0.977 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -11.001 0.358 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.182 4.182 12 C -0.125 4.125 13 C -0.147 4.147 14 H 0.112 0.888 15 C 0.316 3.684 16 O -0.423 6.423 17 N -0.357 5.357 18 C -0.024 4.024 19 C -0.235 4.235 20 C -0.231 4.231 21 C 0.033 3.967 22 H 0.064 0.936 23 H 0.038 0.962 24 H 0.107 0.893 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.239 0.761 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.040 0.960 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.003 -11.502 0.140 13.467 hybrid contribution 0.780 1.202 0.236 1.452 sum 7.782 -10.300 0.376 12.915 Atomic orbital electron populations 1.70053 1.05310 1.25510 1.53469 1.25043 0.95269 0.98452 1.00706 0.86229 0.79322 0.83897 0.77324 1.20247 1.21485 1.21707 1.19204 0.92724 0.84722 1.41974 0.91540 1.44043 1.35869 1.00858 1.50295 1.20852 0.88463 0.98534 0.87977 1.22215 1.00298 0.95828 0.99882 1.21193 0.95963 0.97289 0.98042 1.21990 1.00560 0.91387 1.00805 0.88807 1.21085 0.78888 0.91569 0.76865 1.90627 1.49828 1.43140 1.58749 1.45519 1.30194 1.09218 1.50770 1.21549 0.97232 0.87976 0.95632 1.23419 1.03617 1.03858 0.92568 1.23358 0.92526 1.03313 1.03928 1.20764 0.97962 0.86784 0.91219 0.93585 0.96243 0.89348 0.92853 0.92688 0.92964 0.92085 0.76149 0.84752 0.88350 0.88224 0.88161 0.88500 0.95955 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.41 3.00 -172.31 -0.52 -14.92 16 10 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 11 C -0.14 -2.78 6.08 -26.61 -0.16 -2.95 16 12 C -0.09 -1.61 4.46 -26.69 -0.12 -1.73 16 13 C -0.12 -2.20 2.68 -91.65 -0.25 -2.45 16 14 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 15 C 0.53 8.91 7.16 -10.99 -0.08 8.83 16 16 O -0.55 -10.78 15.55 5.56 0.09 -10.69 16 17 N -0.71 -9.53 5.47 -53.81 -0.29 -9.82 16 18 C 0.08 0.98 6.43 -67.93 -0.44 0.54 16 19 C -0.20 -1.91 10.46 -26.73 -0.28 -2.19 16 20 C -0.19 -1.74 10.45 -26.73 -0.28 -2.02 16 21 C 0.16 3.26 5.65 -3.71 -0.02 3.24 16 22 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.06 1.20 8.13 -51.93 -0.42 0.77 16 29 H 0.40 4.73 8.37 -40.82 -0.34 4.39 16 30 H 0.13 1.75 7.40 -51.93 -0.38 1.36 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 LS Contribution 294.29 15.07 4.43 4.43 Total: -1.00 -30.44 294.29 -8.19 -38.64 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.62 Total: 3.05 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.87 Total: -1.69 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.19 Total: -49.89 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.44 -8.19 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051046154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.837 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds