Wall clock time and date at job start Sun Mar 29 2020 21:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99991 * 2 1 4 4 H 1.48505 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46969 * 300.00010 * 3 2 1 6 6 H 1.48494 * 109.46890 * 59.99890 * 3 2 1 7 7 C 1.38810 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99781 * 197.37673 * 7 2 1 9 9 N 1.36929 * 120.00169 * 17.37899 * 7 2 1 10 10 C 1.46930 * 120.63091 * 27.65618 * 9 7 2 11 11 C 1.53188 * 108.77516 * 126.41472 * 10 9 7 12 12 C 1.53040 * 109.31517 * 54.63637 * 11 10 9 13 13 C 1.53044 * 109.53926 * 298.63402 * 12 11 10 14 14 H 1.09005 * 109.52441 * 301.39815 * 13 12 11 15 15 C 1.50693 * 109.49785 * 181.31495 * 13 12 11 16 16 O 1.21280 * 120.00343 * 0.16405 * 15 13 12 17 17 N 1.34779 * 119.99779 * 180.16538 * 15 13 12 18 18 C 1.46503 * 120.00093 * 179.72681 * 17 15 13 19 19 C 1.53000 * 117.49702 * 223.89560 * 18 17 15 20 20 C 1.52995 * 117.50117 * 155.27054 * 18 17 15 21 21 C 1.46930 * 120.63099 * 207.67950 * 9 7 2 22 22 H 0.97000 * 120.00311 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.58458 * 246.20021 * 10 9 7 24 24 H 1.09001 * 109.58328 * 6.63050 * 10 9 7 25 25 H 1.08999 * 109.50075 * 174.58883 * 11 10 9 26 26 H 1.09006 * 109.49759 * 294.65140 * 11 10 9 27 27 H 1.09002 * 109.46266 * 178.61692 * 12 11 10 28 28 H 1.08995 * 109.46221 * 58.65417 * 12 11 10 29 29 H 0.96999 * 120.00105 * 359.97438 * 17 15 13 30 30 H 1.08999 * 115.54993 * 9.59786 * 18 17 15 31 31 H 1.08998 * 117.50301 * 359.97438 * 19 18 17 32 32 H 1.08996 * 117.49685 * 145.02072 * 19 18 17 33 33 H 1.08996 * 117.50100 * 214.97872 * 20 18 17 34 34 H 1.09006 * 117.49741 * 359.97438 * 20 18 17 35 35 H 1.09000 * 109.58634 * 113.79799 * 21 9 7 36 36 H 1.09000 * 109.58697 * 353.37397 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2799 9 7 1.3725 -2.3611 -0.3531 10 6 0.2279 -2.3347 -1.2741 11 6 0.5009 -3.3050 -2.4277 12 6 0.8188 -4.6901 -1.8597 13 6 2.0745 -4.6102 -0.9885 14 1 2.9087 -4.2405 -1.5848 15 6 2.4051 -5.9805 -0.4559 16 8 1.7074 -6.9289 -0.7468 17 7 3.4764 -6.1522 0.3438 18 6 3.7945 -7.4833 0.8665 19 6 4.1864 -7.5879 2.3418 20 6 5.2482 -7.7614 1.2539 21 6 1.8194 -3.6546 0.1815 22 1 -0.4850 0.8400 -0.0004 23 1 -0.6742 -2.6411 -0.7446 24 1 0.0987 -1.3264 -1.6675 25 1 -0.3799 -3.3673 -3.0669 26 1 1.3492 -2.9470 -3.0112 27 1 0.9893 -5.3883 -2.6792 28 1 -0.0203 -5.0365 -1.2564 29 1 4.0347 -5.3938 0.5762 30 1 3.2216 -8.3058 0.4382 31 1 4.2080 -6.6663 2.9234 32 1 3.8714 -8.4792 2.8842 33 1 5.6317 -8.7668 1.0808 34 1 5.9681 -6.9540 1.1195 35 1 1.0470 -4.0687 0.8296 36 1 2.7401 -3.5172 0.7485 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051046154.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:37 Heat of formation + Delta-G solvation = -20.124356 kcal Electronic energy + Delta-G solvation = -17276.677765 eV Core-core repulsion = 14567.895328 eV Total energy + Delta-G solvation = -2708.782437 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15296 -38.87361 -37.85142 -34.95344 -33.92452 -32.27958 -31.55006 -27.20383 -25.31719 -23.80538 -23.24328 -22.73105 -21.69644 -20.62949 -18.82406 -17.94144 -17.45685 -16.76423 -16.32241 -15.68719 -15.48767 -15.23102 -15.04483 -14.51426 -14.25904 -14.13990 -13.67935 -13.29520 -13.00419 -12.74024 -12.49027 -12.37017 -12.28603 -12.07426 -11.95985 -11.72797 -11.58819 -11.43671 -11.17040 -10.78386 -10.52892 -9.71796 -8.72665 -7.87025 -5.33713 1.48786 1.51049 1.55024 1.61554 2.12575 2.52583 3.01514 3.29014 3.53996 3.81901 3.85906 3.94059 4.06526 4.09469 4.12108 4.36748 4.48199 4.62107 4.75137 4.78623 4.87766 4.92093 5.04822 5.05120 5.16778 5.19636 5.23472 5.26959 5.51862 5.57217 5.66374 5.74986 6.37621 6.50004 7.13086 7.21735 7.82192 8.35804 9.20091 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.028729 B = 0.006334 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.381123 B = 4419.330631 C = 5130.287272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.263 4.263 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.083 4.083 13 C -0.113 4.113 14 H 0.108 0.892 15 C 0.530 3.470 16 O -0.579 6.579 17 N -0.692 5.692 18 C 0.049 3.951 19 C -0.189 4.189 20 C -0.167 4.167 21 C 0.162 3.838 22 H 0.250 0.750 23 H -0.008 1.008 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.413 0.587 30 H 0.119 0.881 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.005 0.995 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.025 -11.743 0.415 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.393 4.393 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.121 4.121 13 C -0.136 4.136 14 H 0.126 0.874 15 C 0.318 3.682 16 O -0.459 6.459 17 N -0.342 5.342 18 C -0.057 4.057 19 C -0.227 4.227 20 C -0.205 4.205 21 C 0.036 3.964 22 H 0.059 0.941 23 H 0.010 0.990 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.250 0.750 30 H 0.137 0.863 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.023 0.977 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.446 -12.269 0.221 15.485 hybrid contribution 0.054 1.364 0.286 1.395 sum 9.500 -10.905 0.506 14.471 Atomic orbital electron populations 1.70213 1.06898 1.25858 1.55272 1.25828 0.95960 1.01659 1.01142 0.85194 0.78840 0.79716 0.76587 1.18574 1.21871 1.22216 1.19612 0.93277 0.85569 1.40804 0.90544 1.44285 1.35777 1.01850 1.50863 1.20672 0.87664 0.97967 0.89075 1.22038 1.01383 0.95110 0.98265 1.21131 0.95830 0.96700 0.98415 1.21784 1.00691 0.91471 0.99637 0.87426 1.20790 0.79501 0.90590 0.77344 1.90618 1.51195 1.43810 1.60270 1.45375 1.28986 1.10500 1.49363 1.21679 0.99877 0.86566 0.97565 1.23491 1.03306 1.04459 0.91449 1.23453 0.90897 1.04648 1.01543 1.20819 0.97938 0.85503 0.92145 0.94121 0.98978 0.92320 0.91062 0.92029 0.91374 0.93687 0.74995 0.86289 0.88262 0.87066 0.86424 0.87428 0.97711 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.97 11.19 21.65 0.24 -54.73 16 2 C -0.05 -2.75 4.91 84.86 0.42 -2.34 16 3 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 4 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.26 -13.86 9.58 84.03 0.81 -13.05 16 8 H 0.08 3.81 7.89 -2.91 -0.02 3.78 16 9 N -0.60 -29.65 3.00 -699.08 -2.09 -31.74 16 10 C 0.17 8.36 5.31 86.36 0.46 8.82 16 11 C -0.13 -4.93 6.08 30.67 0.19 -4.74 16 12 C -0.08 -2.99 4.46 30.62 0.14 -2.85 16 13 C -0.11 -3.85 2.68 -11.46 -0.03 -3.88 16 14 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 15 C 0.53 17.25 7.16 87.65 0.63 17.87 16 16 O -0.58 -22.50 15.55 -3.03 -0.05 -22.54 16 17 N -0.69 -17.37 5.47 -442.54 -2.42 -19.79 16 18 C 0.05 1.06 6.43 44.99 0.29 1.35 16 19 C -0.19 -3.18 10.46 30.60 0.32 -2.86 16 20 C -0.17 -2.46 10.45 30.59 0.32 -2.14 16 21 C 0.16 6.50 5.65 86.36 0.49 6.99 16 22 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 23 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 24 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 28 H 0.04 1.76 8.13 -2.39 -0.02 1.74 16 29 H 0.41 8.65 8.37 -92.71 -0.78 7.87 16 30 H 0.12 3.00 7.40 -2.39 -0.02 2.98 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 36 H 0.07 2.61 7.53 -2.39 -0.02 2.59 16 Total: -1.00 -65.84 294.29 2.02 -63.83 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.29 Total: 16.22 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.02 Total: 3.18 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -4.27 Total: -106.26 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -65.84 2.02 -63.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051046154.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.704 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds